Gvermi11839.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11839.t1
Unique NameGvermi11839.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length550
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2219018..2220667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11839Gvermi11839Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2219018..2220667 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11839.t1.stop1Gvermi11839.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2219018..2219020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11839.t1.CDS1Gvermi11839.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2219018..2220667 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11839.t1.exon1Gvermi11839.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2219018..2220667 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11839.t1.start1Gvermi11839.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2220665..2220667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11839.t1Gvermi11839.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2219018..2220667 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11839.t1 ID=Gvermi11839.t1|Name=Gvermi11839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=550bp
MLSPRPCSLSAQLVCTLLVAFPTFLILAHFERTSLSLGSFRTALRGPSSR
RRLSIWLPNQTCTGSFSSEASEYSDDAFPNALLRDIYLDNRPASQRHARH
KHGPLPSQRIIIAVTAHLSVRIQNENVSVSIRNAPELRAHVDDVRELDVY
NKGDGFEYAAGKKTKRGLEVYECQLIVTLQAKSSQSDFGDYVRSLADDPR
VSVDLDIPLDRFDGKKLLFKPSFAMGCVFGWNAPKVISSRAPARMSDPSA
ILFCANSLSGNKKELERNHFEIAHWAARSLQGSVRFDMAVLPIVVDRSMS
DCNMTDKVCLEDVTKQNKRLFERVADNVAAELNKIGISDDLYERIILIPF
CRLGTHATGSERRHACSGSQRYGQHQITMMPYTLLGGYHKWAMLYDLDEY
IATTDGKGPSEQQPIKAGVLFDKMLRESSHMKRAAFTIAWLNFRIQQSDV
REITSELLLGRSQKLVSSTDADSKCYEISGMLTGKAVVRYDVGLGFVVHQ
PVVQMSGRGMRHNMWQVSCKSERLRVWHARLYSNPLGTCVYAGKGRRDG*
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spliced messenger RNA

>Gvermi11839.t1 ID=Gvermi11839.t1|Name=Gvermi11839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:2219018..2220667- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAGCCCACGTCCTTGTTCTCTGTCGGCACAGCTCGTCTGCACGCT
CCTGGTCGCTTTCCCCACCTTCCTCATCCTCGCACACTTCGAACGAACTT
CACTTTCACTCGGATCGTTTCGAACAGCTCTCAGGGGCCCTTCTAGTCGA
CGGCGCCTTTCAATTTGGCTTCCTAACCAAACATGCACAGGGTCGTTTTC
TAGTGAAGCTTCCGAATATTCAGATGACGCTTTTCCTAATGCGCTCCTGC
GTGACATCTATCTCGACAATCGCCCGGCATCCCAGCGCCATGCCCGGCAT
AAACATGGCCCCTTGCCTTCTCAAAGAATCATAATTGCAGTCACTGCTCA
TCTTTCCGTGCGCATACAGAACGAAAACGTTTCAGTGAGTATCCGTAACG
CACCGGAGTTGAGAGCTCATGTGGATGACGTTCGAGAACTTGATGTATAC
AATAAAGGTGATGGTTTTGAGTATGCTGCCGGTAAAAAGACCAAACGAGG
GTTAGAAGTGTATGAATGCCAGCTGATTGTCACATTGCAAGCGAAAAGTA
GTCAGTCTGATTTTGGAGATTATGTTCGAAGCTTGGCTGATGACCCCCGG
GTAAGCGTAGACCTTGATATTCCGCTTGACCGCTTCGATGGAAAAAAGCT
GCTGTTCAAGCCAAGCTTTGCTATGGGGTGCGTGTTTGGATGGAATGCTC
CAAAAGTGATTAGCTCACGCGCTCCGGCGAGAATGAGTGATCCGTCTGCA
ATTTTATTCTGTGCAAATTCTCTATCCGGGAACAAGAAAGAGCTAGAACG
AAATCATTTTGAGATTGCACATTGGGCCGCTCGTTCGCTGCAAGGCAGTG
TGCGCTTCGACATGGCAGTTTTGCCCATTGTCGTCGACCGTTCAATGTCA
GATTGCAACATGACCGACAAGGTTTGTCTGGAAGACGTGACAAAACAGAA
TAAAAGGCTGTTTGAGAGGGTGGCGGATAATGTAGCTGCTGAGCTGAACA
AAATCGGGATATCGGATGATTTGTACGAAAGAATCATACTGATACCCTTC
TGCAGACTAGGAACACATGCGACGGGATCCGAAAGAAGGCATGCATGTAG
TGGATCTCAACGATACGGACAGCACCAGATTACAATGATGCCATATACGC
TGCTTGGTGGGTACCACAAGTGGGCGATGCTGTACGATCTCGACGAGTAC
ATAGCGACGACAGATGGAAAGGGGCCCAGTGAACAACAGCCCATCAAAGC
TGGCGTTCTTTTCGACAAGATGCTGCGCGAGAGCAGTCACATGAAGAGGG
CAGCATTCACGATCGCGTGGCTGAACTTCCGAATACAACAGTCAGACGTG
CGCGAGATCACGTCAGAATTGCTGCTCGGCCGCAGTCAGAAACTGGTGTC
GAGCACGGATGCGGACTCGAAGTGCTACGAGATAAGTGGCATGCTGACAG
GAAAGGCTGTGGTTCGATACGATGTGGGGTTGGGGTTTGTGGTGCACCAG
CCGGTGGTGCAGATGAGCGGGAGGGGGATGAGGCACAACATGTGGCAGGT
GAGCTGCAAGTCGGAACGCCTGCGCGTGTGGCACGCGCGGCTTTACAGCA
ACCCCCTCGGCACCTGCGTCTACGCCGGAAAGGGCAGGCGGGACGGGTGA
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protein sequence of Gvermi11839.t1

>Gvermi11839.t1 ID=Gvermi11839.t1|Name=Gvermi11839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=550bp
MLSPRPCSLSAQLVCTLLVAFPTFLILAHFERTSLSLGSFRTALRGPSSR
RRLSIWLPNQTCTGSFSSEASEYSDDAFPNALLRDIYLDNRPASQRHARH
KHGPLPSQRIIIAVTAHLSVRIQNENVSVSIRNAPELRAHVDDVRELDVY
NKGDGFEYAAGKKTKRGLEVYECQLIVTLQAKSSQSDFGDYVRSLADDPR
VSVDLDIPLDRFDGKKLLFKPSFAMGCVFGWNAPKVISSRAPARMSDPSA
ILFCANSLSGNKKELERNHFEIAHWAARSLQGSVRFDMAVLPIVVDRSMS
DCNMTDKVCLEDVTKQNKRLFERVADNVAAELNKIGISDDLYERIILIPF
CRLGTHATGSERRHACSGSQRYGQHQITMMPYTLLGGYHKWAMLYDLDEY
IATTDGKGPSEQQPIKAGVLFDKMLRESSHMKRAAFTIAWLNFRIQQSDV
REITSELLLGRSQKLVSSTDADSKCYEISGMLTGKAVVRYDVGLGFVVHQ
PVVQMSGRGMRHNMWQVSCKSERLRVWHARLYSNPLGTCVYAGKGRRDG*
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mRNA from alignment at ScGOVlb_3404:2219018..2220667-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11839.t1 ID=Gvermi11839.t1|Name=Gvermi11839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:2219018..2220667- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTAGCCCACGTCCTTGTTCTCTGTCGGCACAGCTCGTCTGCACGCT
CCTGGTCGCTTTCCCCACCTTCCTCATCCTCGCACACTTCGAACGAACTT
CACTTTCACTCGGATCGTTTCGAACAGCTCTCAGGGGCCCTTCTAGTCGA
CGGCGCCTTTCAATTTGGCTTCCTAACCAAACATGCACAGGGTCGTTTTC
TAGTGAAGCTTCCGAATATTCAGATGACGCTTTTCCTAATGCGCTCCTGC
GTGACATCTATCTCGACAATCGCCCGGCATCCCAGCGCCATGCCCGGCAT
AAACATGGCCCCTTGCCTTCTCAAAGAATCATAATTGCAGTCACTGCTCA
TCTTTCCGTGCGCATACAGAACGAAAACGTTTCAGTGAGTATCCGTAACG
CACCGGAGTTGAGAGCTCATGTGGATGACGTTCGAGAACTTGATGTATAC
AATAAAGGTGATGGTTTTGAGTATGCTGCCGGTAAAAAGACCAAACGAGG
GTTAGAAGTGTATGAATGCCAGCTGATTGTCACATTGCAAGCGAAAAGTA
GTCAGTCTGATTTTGGAGATTATGTTCGAAGCTTGGCTGATGACCCCCGG
GTAAGCGTAGACCTTGATATTCCGCTTGACCGCTTCGATGGAAAAAAGCT
GCTGTTCAAGCCAAGCTTTGCTATGGGGTGCGTGTTTGGATGGAATGCTC
CAAAAGTGATTAGCTCACGCGCTCCGGCGAGAATGAGTGATCCGTCTGCA
ATTTTATTCTGTGCAAATTCTCTATCCGGGAACAAGAAAGAGCTAGAACG
AAATCATTTTGAGATTGCACATTGGGCCGCTCGTTCGCTGCAAGGCAGTG
TGCGCTTCGACATGGCAGTTTTGCCCATTGTCGTCGACCGTTCAATGTCA
GATTGCAACATGACCGACAAGGTTTGTCTGGAAGACGTGACAAAACAGAA
TAAAAGGCTGTTTGAGAGGGTGGCGGATAATGTAGCTGCTGAGCTGAACA
AAATCGGGATATCGGATGATTTGTACGAAAGAATCATACTGATACCCTTC
TGCAGACTAGGAACACATGCGACGGGATCCGAAAGAAGGCATGCATGTAG
TGGATCTCAACGATACGGACAGCACCAGATTACAATGATGCCATATACGC
TGCTTGGTGGGTACCACAAGTGGGCGATGCTGTACGATCTCGACGAGTAC
ATAGCGACGACAGATGGAAAGGGGCCCAGTGAACAACAGCCCATCAAAGC
TGGCGTTCTTTTCGACAAGATGCTGCGCGAGAGCAGTCACATGAAGAGGG
CAGCATTCACGATCGCGTGGCTGAACTTCCGAATACAACAGTCAGACGTG
CGCGAGATCACGTCAGAATTGCTGCTCGGCCGCAGTCAGAAACTGGTGTC
GAGCACGGATGCGGACTCGAAGTGCTACGAGATAAGTGGCATGCTGACAG
GAAAGGCTGTGGTTCGATACGATGTGGGGTTGGGGTTTGTGGTGCACCAG
CCGGTGGTGCAGATGAGCGGGAGGGGGATGAGGCACAACATGTGGCAGGT
GAGCTGCAAGTCGGAACGCCTGCGCGTGTGGCACGCGCGGCTTTACAGCA
ACCCCCTCGGCACCTGCGTCTACGCCGGAAAGGGCAGGCGGGACGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2219018..2220667-

>Gvermi11839.t1 ID=Gvermi11839.t1|Name=Gvermi11839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:2219018..2220667- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTAGCCCACGTCCTTGTTCTCTGTCGGCACAGCTCGTCTGCACGCT
CCTGGTCGCTTTCCCCACCTTCCTCATCCTCGCACACTTCGAACGAACTT
CACTTTCACTCGGATCGTTTCGAACAGCTCTCAGGGGCCCTTCTAGTCGA
CGGCGCCTTTCAATTTGGCTTCCTAACCAAACATGCACAGGGTCGTTTTC
TAGTGAAGCTTCCGAATATTCAGATGACGCTTTTCCTAATGCGCTCCTGC
GTGACATCTATCTCGACAATCGCCCGGCATCCCAGCGCCATGCCCGGCAT
AAACATGGCCCCTTGCCTTCTCAAAGAATCATAATTGCAGTCACTGCTCA
TCTTTCCGTGCGCATACAGAACGAAAACGTTTCAGTGAGTATCCGTAACG
CACCGGAGTTGAGAGCTCATGTGGATGACGTTCGAGAACTTGATGTATAC
AATAAAGGTGATGGTTTTGAGTATGCTGCCGGTAAAAAGACCAAACGAGG
GTTAGAAGTGTATGAATGCCAGCTGATTGTCACATTGCAAGCGAAAAGTA
GTCAGTCTGATTTTGGAGATTATGTTCGAAGCTTGGCTGATGACCCCCGG
GTAAGCGTAGACCTTGATATTCCGCTTGACCGCTTCGATGGAAAAAAGCT
GCTGTTCAAGCCAAGCTTTGCTATGGGGTGCGTGTTTGGATGGAATGCTC
CAAAAGTGATTAGCTCACGCGCTCCGGCGAGAATGAGTGATCCGTCTGCA
ATTTTATTCTGTGCAAATTCTCTATCCGGGAACAAGAAAGAGCTAGAACG
AAATCATTTTGAGATTGCACATTGGGCCGCTCGTTCGCTGCAAGGCAGTG
TGCGCTTCGACATGGCAGTTTTGCCCATTGTCGTCGACCGTTCAATGTCA
GATTGCAACATGACCGACAAGGTTTGTCTGGAAGACGTGACAAAACAGAA
TAAAAGGCTGTTTGAGAGGGTGGCGGATAATGTAGCTGCTGAGCTGAACA
AAATCGGGATATCGGATGATTTGTACGAAAGAATCATACTGATACCCTTC
TGCAGACTAGGAACACATGCGACGGGATCCGAAAGAAGGCATGCATGTAG
TGGATCTCAACGATACGGACAGCACCAGATTACAATGATGCCATATACGC
TGCTTGGTGGGTACCACAAGTGGGCGATGCTGTACGATCTCGACGAGTAC
ATAGCGACGACAGATGGAAAGGGGCCCAGTGAACAACAGCCCATCAAAGC
TGGCGTTCTTTTCGACAAGATGCTGCGCGAGAGCAGTCACATGAAGAGGG
CAGCATTCACGATCGCGTGGCTGAACTTCCGAATACAACAGTCAGACGTG
CGCGAGATCACGTCAGAATTGCTGCTCGGCCGCAGTCAGAAACTGGTGTC
GAGCACGGATGCGGACTCGAAGTGCTACGAGATAAGTGGCATGCTGACAG
GAAAGGCTGTGGTTCGATACGATGTGGGGTTGGGGTTTGTGGTGCACCAG
CCGGTGGTGCAGATGAGCGGGAGGGGGATGAGGCACAACATGTGGCAGGT
GAGCTGCAAGTCGGAACGCCTGCGCGTGTGGCACGCGCGGCTTTACAGCA
ACCCCCTCGGCACCTGCGTCTACGCCGGAAAGGGCAGGCGGGACGGGTGA
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