Gvermi11838.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11838.t1
Unique NameGvermi11838.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2216800..2218455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708846.1
Preferred nameATP5A1
PFAMsATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
Max annot lvl2759|Eukaryota
KEGG koko:K02132
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000166,GO:0000275,GO:0001936,GO:0001937,GO:0003674,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0005759,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008144,GO:0008150,GO:0008152,GO:0008285,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009295,GO:0009987,GO:0010594,GO:0010595,GO:0010632,GO:0010634,GO:0010876,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0019915,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0022900,GO:0030334,GO:0030335,GO:0030554,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0033036,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042287,GO:0042288,GO:0042407,GO:0042623,GO:0042625,GO:0042626,GO:0042645,GO:0042776,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043532,GO:0043535,GO:0043536,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045121,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0046933,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051338,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0097159,GO:0097367,GO:0098589,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098805,GO:0098857,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1902769,GO:1990542,GO:2000145,GO:2000147
Evalue1.01e-286
EggNOG OGsCOG0056@1|root,KOG1353@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BiGG ReactioniMM904.YBL099W,iND750.YBL099W
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11838Gvermi11838Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2216800..2218455 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11838.t1.stop1Gvermi11838.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2216800..2216802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11838.t1.CDS1Gvermi11838.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2216800..2218455 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11838.t1.exon1Gvermi11838.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2216800..2218455 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11838.t1.start1Gvermi11838.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2218453..2218455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11838.t1Gvermi11838.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2216800..2218455 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11838.t1 ID=Gvermi11838.t1|Name=Gvermi11838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=552bp
MSPAVMRSVLAGVRAVTRFAREPVAFRAVPVATMRTSAPVSAAMDPAEVS
SIIEDRIINYQQKIELDEVGRVLSIGDGIARVYGLNNCKAGEMVEFESGL
KGMALNLEVGNCGIVVFGNDREISEGQICRRTGAIVDVPVGEGMLGRVVD
ALGNPIDGKGPITNVTRERVEVKAPGIMPRMGVHEPMQTGLKAVDALVPI
GRGQRELIIGDRQTGKTAVALDTILNQKGNFDSGDVEKQLYCVYVAIGQK
RSTVAQLAKTLEEAGALKYSIIVAATASDAAPLQFLAPYSGCAIGEYFRD
NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDIFYLHSRLLERA
AKMNKDVGGGSLTALPIIETQAGDVSAYVPTNVISITDGQVFLETELFYK
GQRPAINVGLSVSRVGSAAQMKAMKQVAGSMKLELAQHREVAAFAQFGSD
LDASTQQMLNRGDRLNELLKQDQFVPMPPEEQVVTLYAGVRGFLDKMPVN
KIKEFEAAYLKYMRANHAALLSTIRKEGSVSDATDGALKNALTTFLETFE
A*
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spliced messenger RNA

>Gvermi11838.t1 ID=Gvermi11838.t1|Name=Gvermi11838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at ScGOVlb_3404:2216800..2218455- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGGCTGTCATGCGTAGCGTTTTGGCCGGCGTGCGCGCCGTCAC
ACGCTTCGCCCGTGAGCCTGTCGCCTTCCGTGCCGTCCCCGTCGCCACCA
TGCGCACCTCCGCCCCCGTCTCCGCCGCCATGGATCCCGCAGAGGTCTCC
TCTATCATCGAGGATCGAATCATCAACTACCAGCAAAAGATCGAGTTGGA
CGAGGTTGGCAGGGTGCTCTCCATTGGTGATGGTATTGCGCGTGTGTACG
GTCTCAACAATTGCAAGGCCGGCGAAATGGTTGAGTTCGAGTCCGGCCTC
AAGGGCATGGCCCTCAATCTTGAGGTGGGCAACTGTGGTATCGTCGTCTT
CGGTAACGATCGCGAAATATCTGAGGGCCAGATTTGCCGTCGTACCGGAG
CTATTGTCGATGTCCCCGTTGGCGAGGGTATGCTCGGTCGCGTCGTCGAT
GCCCTCGGCAATCCAATTGACGGTAAAGGGCCCATCACCAACGTCACCCG
TGAACGTGTCGAAGTCAAGGCGCCCGGCATCATGCCGCGCATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCTGTGGATGCTCTAGTGCCGATC
GGCCGTGGCCAACGTGAACTTATTATTGGAGATCGTCAGACCGGAAAGAC
CGCCGTCGCCCTGGATACCATACTTAACCAGAAGGGTAACTTTGACAGTG
GTGACGTTGAAAAGCAGTTGTACTGTGTGTACGTTGCCATCGGTCAGAAG
CGATCCACTGTCGCCCAGCTGGCCAAGACCCTCGAGGAAGCGGGAGCCCT
CAAGTATTCCATTATTGTCGCTGCCACCGCCTCTGATGCTGCCCCGCTCC
AGTTCCTTGCTCCTTACTCTGGATGTGCTATTGGCGAGTATTTCCGCGAC
AATGGTAAGCATGCGCTTATTATCTACGATGATCTGTCCAAGCAGGCTGT
TGCATATCGACAGATGTCTTTGCTTCTTCGTCGACCTCCAGGACGTGAGG
CCTACCCTGGAGATATTTTCTACCTCCATTCACGTTTGTTGGAACGGGCT
GCTAAAATGAACAAGGACGTCGGCGGAGGATCTCTTACTGCCCTACCCAT
CATCGAGACGCAAGCTGGTGATGTGTCTGCGTACGTGCCTACCAATGTGA
TTTCTATTACCGATGGTCAGGTGTTTTTGGAAACTGAACTCTTCTACAAG
GGTCAACGACCAGCCATTAACGTTGGTCTCTCCGTGTCTCGGGTGGGTTC
TGCCGCCCAGATGAAGGCCATGAAGCAAGTGGCCGGTTCAATGAAGCTAG
AGTTGGCGCAGCATAGGGAAGTTGCTGCCTTCGCGCAGTTCGGTTCGGAT
CTTGATGCTTCCACCCAACAGATGCTTAACCGTGGTGACCGCTTGAATGA
GTTGTTGAAACAAGACCAATTCGTGCCGATGCCCCCTGAGGAGCAAGTGG
TCACTCTGTATGCCGGTGTGCGCGGTTTCCTGGATAAGATGCCCGTCAAC
AAGATCAAGGAATTTGAAGCAGCCTACTTGAAGTACATGCGCGCCAACCA
TGCCGCGTTGCTTTCGACGATCAGAAAGGAAGGAAGTGTGTCTGACGCCA
CAGATGGTGCTTTGAAGAATGCCCTCACCACGTTTTTGGAGACATTTGAA
GCTTAG
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protein sequence of Gvermi11838.t1

>Gvermi11838.t1 ID=Gvermi11838.t1|Name=Gvermi11838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=552bp
MSPAVMRSVLAGVRAVTRFAREPVAFRAVPVATMRTSAPVSAAMDPAEVS
SIIEDRIINYQQKIELDEVGRVLSIGDGIARVYGLNNCKAGEMVEFESGL
KGMALNLEVGNCGIVVFGNDREISEGQICRRTGAIVDVPVGEGMLGRVVD
ALGNPIDGKGPITNVTRERVEVKAPGIMPRMGVHEPMQTGLKAVDALVPI
GRGQRELIIGDRQTGKTAVALDTILNQKGNFDSGDVEKQLYCVYVAIGQK
RSTVAQLAKTLEEAGALKYSIIVAATASDAAPLQFLAPYSGCAIGEYFRD
NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDIFYLHSRLLERA
AKMNKDVGGGSLTALPIIETQAGDVSAYVPTNVISITDGQVFLETELFYK
GQRPAINVGLSVSRVGSAAQMKAMKQVAGSMKLELAQHREVAAFAQFGSD
LDASTQQMLNRGDRLNELLKQDQFVPMPPEEQVVTLYAGVRGFLDKMPVN
KIKEFEAAYLKYMRANHAALLSTIRKEGSVSDATDGALKNALTTFLETFE
A*
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mRNA from alignment at ScGOVlb_3404:2216800..2218455-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11838.t1 ID=Gvermi11838.t1|Name=Gvermi11838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at ScGOVlb_3404:2216800..2218455- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCCGGCTGTCATGCGTAGCGTTTTGGCCGGCGTGCGCGCCGTCAC
ACGCTTCGCCCGTGAGCCTGTCGCCTTCCGTGCCGTCCCCGTCGCCACCA
TGCGCACCTCCGCCCCCGTCTCCGCCGCCATGGATCCCGCAGAGGTCTCC
TCTATCATCGAGGATCGAATCATCAACTACCAGCAAAAGATCGAGTTGGA
CGAGGTTGGCAGGGTGCTCTCCATTGGTGATGGTATTGCGCGTGTGTACG
GTCTCAACAATTGCAAGGCCGGCGAAATGGTTGAGTTCGAGTCCGGCCTC
AAGGGCATGGCCCTCAATCTTGAGGTGGGCAACTGTGGTATCGTCGTCTT
CGGTAACGATCGCGAAATATCTGAGGGCCAGATTTGCCGTCGTACCGGAG
CTATTGTCGATGTCCCCGTTGGCGAGGGTATGCTCGGTCGCGTCGTCGAT
GCCCTCGGCAATCCAATTGACGGTAAAGGGCCCATCACCAACGTCACCCG
TGAACGTGTCGAAGTCAAGGCGCCCGGCATCATGCCGCGCATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCTGTGGATGCTCTAGTGCCGATC
GGCCGTGGCCAACGTGAACTTATTATTGGAGATCGTCAGACCGGAAAGAC
CGCCGTCGCCCTGGATACCATACTTAACCAGAAGGGTAACTTTGACAGTG
GTGACGTTGAAAAGCAGTTGTACTGTGTGTACGTTGCCATCGGTCAGAAG
CGATCCACTGTCGCCCAGCTGGCCAAGACCCTCGAGGAAGCGGGAGCCCT
CAAGTATTCCATTATTGTCGCTGCCACCGCCTCTGATGCTGCCCCGCTCC
AGTTCCTTGCTCCTTACTCTGGATGTGCTATTGGCGAGTATTTCCGCGAC
AATGGTAAGCATGCGCTTATTATCTACGATGATCTGTCCAAGCAGGCTGT
TGCATATCGACAGATGTCTTTGCTTCTTCGTCGACCTCCAGGACGTGAGG
CCTACCCTGGAGATATTTTCTACCTCCATTCACGTTTGTTGGAACGGGCT
GCTAAAATGAACAAGGACGTCGGCGGAGGATCTCTTACTGCCCTACCCAT
CATCGAGACGCAAGCTGGTGATGTGTCTGCGTACGTGCCTACCAATGTGA
TTTCTATTACCGATGGTCAGGTGTTTTTGGAAACTGAACTCTTCTACAAG
GGTCAACGACCAGCCATTAACGTTGGTCTCTCCGTGTCTCGGGTGGGTTC
TGCCGCCCAGATGAAGGCCATGAAGCAAGTGGCCGGTTCAATGAAGCTAG
AGTTGGCGCAGCATAGGGAAGTTGCTGCCTTCGCGCAGTTCGGTTCGGAT
CTTGATGCTTCCACCCAACAGATGCTTAACCGTGGTGACCGCTTGAATGA
GTTGTTGAAACAAGACCAATTCGTGCCGATGCCCCCTGAGGAGCAAGTGG
TCACTCTGTATGCCGGTGTGCGCGGTTTCCTGGATAAGATGCCCGTCAAC
AAGATCAAGGAATTTGAAGCAGCCTACTTGAAGTACATGCGCGCCAACCA
TGCCGCGTTGCTTTCGACGATCAGAAAGGAAGGAAGTGTGTCTGACGCCA
CAGATGGTGCTTTGAAGAATGCCCTCACCACGTTTTTGGAGACATTTGAA
GCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2216800..2218455-

>Gvermi11838.t1 ID=Gvermi11838.t1|Name=Gvermi11838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1656bp|location=Sequence derived from alignment at ScGOVlb_3404:2216800..2218455- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCCGGCTGTCATGCGTAGCGTTTTGGCCGGCGTGCGCGCCGTCAC
ACGCTTCGCCCGTGAGCCTGTCGCCTTCCGTGCCGTCCCCGTCGCCACCA
TGCGCACCTCCGCCCCCGTCTCCGCCGCCATGGATCCCGCAGAGGTCTCC
TCTATCATCGAGGATCGAATCATCAACTACCAGCAAAAGATCGAGTTGGA
CGAGGTTGGCAGGGTGCTCTCCATTGGTGATGGTATTGCGCGTGTGTACG
GTCTCAACAATTGCAAGGCCGGCGAAATGGTTGAGTTCGAGTCCGGCCTC
AAGGGCATGGCCCTCAATCTTGAGGTGGGCAACTGTGGTATCGTCGTCTT
CGGTAACGATCGCGAAATATCTGAGGGCCAGATTTGCCGTCGTACCGGAG
CTATTGTCGATGTCCCCGTTGGCGAGGGTATGCTCGGTCGCGTCGTCGAT
GCCCTCGGCAATCCAATTGACGGTAAAGGGCCCATCACCAACGTCACCCG
TGAACGTGTCGAAGTCAAGGCGCCCGGCATCATGCCGCGCATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCTGTGGATGCTCTAGTGCCGATC
GGCCGTGGCCAACGTGAACTTATTATTGGAGATCGTCAGACCGGAAAGAC
CGCCGTCGCCCTGGATACCATACTTAACCAGAAGGGTAACTTTGACAGTG
GTGACGTTGAAAAGCAGTTGTACTGTGTGTACGTTGCCATCGGTCAGAAG
CGATCCACTGTCGCCCAGCTGGCCAAGACCCTCGAGGAAGCGGGAGCCCT
CAAGTATTCCATTATTGTCGCTGCCACCGCCTCTGATGCTGCCCCGCTCC
AGTTCCTTGCTCCTTACTCTGGATGTGCTATTGGCGAGTATTTCCGCGAC
AATGGTAAGCATGCGCTTATTATCTACGATGATCTGTCCAAGCAGGCTGT
TGCATATCGACAGATGTCTTTGCTTCTTCGTCGACCTCCAGGACGTGAGG
CCTACCCTGGAGATATTTTCTACCTCCATTCACGTTTGTTGGAACGGGCT
GCTAAAATGAACAAGGACGTCGGCGGAGGATCTCTTACTGCCCTACCCAT
CATCGAGACGCAAGCTGGTGATGTGTCTGCGTACGTGCCTACCAATGTGA
TTTCTATTACCGATGGTCAGGTGTTTTTGGAAACTGAACTCTTCTACAAG
GGTCAACGACCAGCCATTAACGTTGGTCTCTCCGTGTCTCGGGTGGGTTC
TGCCGCCCAGATGAAGGCCATGAAGCAAGTGGCCGGTTCAATGAAGCTAG
AGTTGGCGCAGCATAGGGAAGTTGCTGCCTTCGCGCAGTTCGGTTCGGAT
CTTGATGCTTCCACCCAACAGATGCTTAACCGTGGTGACCGCTTGAATGA
GTTGTTGAAACAAGACCAATTCGTGCCGATGCCCCCTGAGGAGCAAGTGG
TCACTCTGTATGCCGGTGTGCGCGGTTTCCTGGATAAGATGCCCGTCAAC
AAGATCAAGGAATTTGAAGCAGCCTACTTGAAGTACATGCGCGCCAACCA
TGCCGCGTTGCTTTCGACGATCAGAAAGGAAGGAAGTGTGTCTGACGCCA
CAGATGGTGCTTTGAAGAATGCCCTCACCACGTTTTTGGAGACATTTGAA
GCTTAG
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