Gvermi11835.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11835.t1
Unique NameGvermi11835.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2205747..2207777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11835Gvermi11835Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2205747..2207777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11835.t1Gvermi11835.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2205747..2207777 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11835.t1.start1Gvermi11835.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2205747..2205749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11835.t1.CDS1Gvermi11835.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2205747..2205851 +
Gvermi11835.t1.CDS2Gvermi11835.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2205963..2205985 +
Gvermi11835.t1.CDS3Gvermi11835.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2207487..2207690 +
Gvermi11835.t1.CDS4Gvermi11835.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2207765..2207777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11835.t1.exon1Gvermi11835.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2205747..2205851 +
Gvermi11835.t1.exon2Gvermi11835.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2205963..2205985 +
Gvermi11835.t1.exon3Gvermi11835.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2207487..2207690 +
Gvermi11835.t1.exon4Gvermi11835.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2207765..2207777 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11835.t1.intron1Gvermi11835.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2205852..2205962 +
Gvermi11835.t1.intron2Gvermi11835.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2205986..2207486 +
Gvermi11835.t1.intron3Gvermi11835.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2207691..2207764 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11835.t1.stop1Gvermi11835.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2207775..2207777 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11835.t1 ID=Gvermi11835.t1|Name=Gvermi11835.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=115bp
MEQERCNYMVRRRYDSAENLRCIDYSRTSEDILEKNREWLRSLENSSFEK
QRGNAMGDLEEEYSDADLDSGDDDDNLPSMVSSRNATTSGSQSRAFVPFY
THLGGDDLDDDNLE*
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spliced messenger RNA

>Gvermi11835.t1 ID=Gvermi11835.t1|Name=Gvermi11835.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_3404:2205747..2207777+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACAAGAAAGATGTAATTATATGGTTAGAAGGAGATATGATTCTGC
AGAAAATTTGCGTTGCATTGATTACTCACGCACATCAGAAGATATCCTAG
AAAAGAATAGAGAGTGGTTGCGGTCGTTAGAGAACAGCAGCTTTGAGAAG
CAGCGCGGAAACGCCATGGGTGATTTGGAAGAAGAATACTCTGACGCGGA
CTTGGATTCCGGAGATGATGATGACAATCTTCCTTCTATGGTTAGCTCAC
GCAATGCCACGACTTCAGGTTCTCAGTCAAGAGCTTTCGTGCCCTTTTAC
ACCCATCTTGGAGGGGACGATCTTGACGATGACAATTTGGAATGA
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protein sequence of Gvermi11835.t1

>Gvermi11835.t1 ID=Gvermi11835.t1|Name=Gvermi11835.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
MEQERCNYMVRRRYDSAENLRCIDYSRTSEDILEKNREWLRSLENSSFEK
QRGNAMGDLEEEYSDADLDSGDDDDNLPSMVSSRNATTSGSQSRAFVPFY
THLGGDDLDDDNLE*
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mRNA from alignment at ScGOVlb_3404:2205747..2207777+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11835.t1 ID=Gvermi11835.t1|Name=Gvermi11835.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at ScGOVlb_3404:2205747..2207777+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACAAGAAAGATGTAATTATATGGTTAGAAGGAGATATGATTCTGC
AGAAAATTTGCGTTGCATTGATTACTCACGCACATCAGAAGATATCCTAG
AAAAGGTAAGTTGTTACTTTGTCATTTTAGAAAATATTGATCGACTACAA
GATTGATGCGACTCATCCACGAATGAGAATCTGACACCCCATAACGATTG
GTTGATGTCCGGACAGAATAGAGAGTGGTTGCGGTCGTTGTTATAAAAGC
GATACCACAAAAGTTGGAGCGAAGAAGCACCAATGAAGTCTTGTTCAGTT
TCTGCGGGGAGTTTGATACGATAGAGAATGTGAGAAATAAGAGTTACATA
GATACAGTCATAGTTTAATTAAGAAAATCGGGCGATGATCCTAACTCGTG
AAAATGCAATGTCTCCCACCCTTTTTTGGTAGTCAACTAAATATCAGACT
TGCTGCACTATAATTTTTGCCTTTTCCTGAGAGAAAGCTTCGTCTAGAAG
CTTTGATTCAGCTGTAGTAAAAGTTGATGCTCACAATAAAGAAGAAATTA
TGAACTATTTTAGAGTCTGGTCAACCTTACAATGATGTCTTGGTTGACAT
GCTACTTGCAATGTTATGAATGTGAATTATCAGTGACTGGAGAGGACAAA
ACTCCTTATAAGCAGGAGAGGCTTTGACCAAATGCAAAACTTTTACAAAC
ATGAAAGTGAGGAGAGCACTGAAGTGGTGACCTAGAGAACTCTAAAAAAA
AAACGATCAGCTTTGTTTGTGTAGACTTACAACGACTCCGATCTATATCA
GCATGACCTTGGTCATTTTTAAGGAGAACACGTACCGATCTATGTCAAAT
AATCAATTCTTGGCTGATCCCAGCCATTGAGGACATTTGCGATGACCAGG
ACAGCGGAGGACCAGAAGAAATTGAGTCAAGTGCTCACAAAGAGCCGAAA
AAGACTGGATTGACATGTAGTTTAAGCAAGCTTCCATAATTGGTTCTCAT
TTACAGAAAATGATGCAGACTGAGAAGAACGGTAAAGCACGCGCTGCAGA
ATGTCATTGCCTTCAATAACTCCATTGAATTTTAATGTGTTCTTAGGCAA
ATGCATGAGATTCGTGAAGCAAAATTGAGTTTAAACGAGCAGTTAAAGGG
TGGAGCTAGAGGAGAAGCGCTGCAGAACTGCTTGAAACTGCTTGATAAAT
TCGTGATGGCAGTAGAAACAAATAGCACAGGTTAACGAAAACAGAGAGGC
AAGACATCTTCGTGGAGAGATGAAATCCCTGGGTAGCAAGACGCTGCAGC
GAAGCAGTGAGAAGAAATCATGGAGATTTTGTTCTTTTTTTGGAGATGTA
CCGTAGAAAAGAAGTGTACGTGAAACAAAAGCGCTCGTTTCATCTTTTCT
AATACCAATGAAGTCTGCaaagaaaagttagaacgacatgaagaaaggca
gaatgaaaagagttagagaaaaaataaagCTGTCAGCTACTTGTTTTTGA
GTCGGCTAGCAAAGGTAACGCGGTCACTGAATTGTGGGTTCCATTTTTGT
GTCTTGTTCGCATCGCCGACAGGTTTCAGATTCTCAAGTTTGCACCCTTT
CGCCTCGGAATTTTCTGTTCGATACGTTGCGGAGTGCCATCCACTCATCT
GCATTCACAGGGAAACACAGCAACGAATTCTTACGTTCGGCATGCAGACG
TTTTCGTGAGCAACCTCTCTACTTCCTGCAAAACAAACAGAGAGAACAGC
AGCTTTGAGAAGCAGCGCGGAAACGCCATGGGTGATTTGGAAGAAGAATA
CTCTGACGCGGACTTGGATTCCGGAGATGATGATGACAATCTTCCTTCTA
TGGTTAGCTCACGCAATGCCACGACTTCAGGTTCTCAGTCAAGAGCTTTC
GTGCCCTTTTACACCCATCTTGGAGGGGACGATCTTGACGATGAGTACGT
ACCCCTTAGCCTTCTGTTTCAAGAGCCATCAATGACCAACAGCTAACAAA
GCACGCTTCGTAATACAGCAATTTGGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2205747..2207777+

>Gvermi11835.t1 ID=Gvermi11835.t1|Name=Gvermi11835.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=345bp|location=Sequence derived from alignment at ScGOVlb_3404:2205747..2207777+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACAAGAAAGATGTAATTATATGGTTAGAAGGAGATATGATTCTGC
AGAAAATTTGCGTTGCATTGATTACTCACGCACATCAGAAGATATCCTAG
AAAAGAATAGAGAGTGGTTGCGGTCGTTAGAGAACAGCAGCTTTGAGAAG
CAGCGCGGAAACGCCATGGGTGATTTGGAAGAAGAATACTCTGACGCGGA
CTTGGATTCCGGAGATGATGATGACAATCTTCCTTCTATGGTTAGCTCAC
GCAATGCCACGACTTCAGGTTCTCAGTCAAGAGCTTTCGTGCCCTTTTAC
ACCCATCTTGGAGGGGACGATCTTGACGATGACAATTTGGAATGA
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