Gvermi11834.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11834.t1
Unique NameGvermi11834.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2203231..2204052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9555.ENSPANP00000000041
Preferred nameTBCC
PFAMsTBCC,TBCC_N
Max annot lvl33208|Metazoa
KEGG koko:K21766
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005929,GO:0006457,GO:0007021,GO:0007023,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0032391,GO:0034622,GO:0035869,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0051087,GO:0065003,GO:0071840,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120038
Evalue5.44e-26
EggNOG OGsKOG2512@1|root,KOG2512@2759|Eukaryota,39SCD@33154|Opisthokonta,3BFCJ@33208|Metazoa,3CY8P@33213|Bilateria,488Z0@7711|Chordata,48Y42@7742|Vertebrata,3JCE8@40674|Mammalia,35PJ7@314146|Euarchontoglires,4MCUF@9443|Primates,3630D@314294|Cercopithecoidea
DescriptionTubulin-specific chaperone C N-terminal domain
COG categoryO
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11834Gvermi11834Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2203231..2204052 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11834.t1.start1Gvermi11834.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2203231..2203233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11834.t1.CDS1Gvermi11834.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2203231..2204052 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11834.t1.exon1Gvermi11834.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2203231..2204052 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11834.t1.stop1Gvermi11834.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2204050..2204052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11834.t1Gvermi11834.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2203231..2204052 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11834.t1 ID=Gvermi11834.t1|Name=Gvermi11834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=274bp
MPLTSKSEQLEAEFAAQCKQLRCAIEAAELETLPEIRVQLETVRELLAQG
TEWWTKYDVRRNSEELVSLELSVDNASRRLRPRRRFRFSKVPPSERPAVQ
LEGKSALQKEALPLGRLGNGLVVDSRSIRNGKIELSDLNGKTLAIVDLND
VSIILHGSPTAVQLKNLTRCDVQSFLVNGTVFISECKDCIVNVGCHQLRI
HQSKNCSLWTCSNCAPIIEGCEQMRFGELQIQGRQGHWDDVKDFTWLRED
RSPNWDLLEAIKVFPARPTENQA*
back to top

spliced messenger RNA

>Gvermi11834.t1 ID=Gvermi11834.t1|Name=Gvermi11834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_3404:2203231..2204052+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATTGACCTCTAAATCTGAGCAGCTTGAGGCGGAGTTTGCTGCACA
GTGTAAACAACTCCGTTGTGCGATAGAAGCGGCAGAGCTGGAGACGCTCC
CGGAAATCAGAGTGCAACTAGAAACGGTAAGGGAATTGCTCGCGCAAGGC
ACCGAATGGTGGACAAAATACGATGTGCGACGCAATTCAGAGGAGCTTGT
TTCTCTTGAATTAAGTGTAGACAACGCATCAAGACGGCTCCGTCCACGAA
GGAGATTTCGGTTTAGCAAGGTGCCACCTTCTGAAAGACCTGCAGTGCAA
CTTGAGGGCAAATCAGCTCTCCAGAAAGAGGCTCTTCCCTTGGGACGGTT
AGGGAACGGACTTGTGGTAGATTCGAGAAGTATTCGGAATGGAAAAATAG
AGCTCAGTGATCTAAACGGTAAGACTTTGGCCATCGTGGATTTGAATGAT
GTGAGCATCATTCTCCATGGAAGTCCAACAGCCGTTCAACTCAAAAATCT
CACCCGCTGCGATGTGCAGAGTTTTCTTGTGAACGGTACCGTGTTTATCT
CGGAATGCAAAGATTGTATTGTAAACGTAGGATGTCATCAACTCCGAATA
CATCAGTCCAAGAACTGTTCCTTATGGACATGCTCCAACTGTGCACCGAT
CATCGAAGGATGCGAGCAAATGCGCTTTGGAGAGTTGCAAATTCAAGGGC
GCCAGGGTCATTGGGATGATGTCAAGGATTTCACCTGGCTACGTGAAGAT
CGTAGTCCAAACTGGGACTTGCTGGAAGCAATAAAGGTCTTTCCGGCACG
CCCTACCGAGAATCAGGCATAA
back to top

protein sequence of Gvermi11834.t1

>Gvermi11834.t1 ID=Gvermi11834.t1|Name=Gvermi11834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=274bp
MPLTSKSEQLEAEFAAQCKQLRCAIEAAELETLPEIRVQLETVRELLAQG
TEWWTKYDVRRNSEELVSLELSVDNASRRLRPRRRFRFSKVPPSERPAVQ
LEGKSALQKEALPLGRLGNGLVVDSRSIRNGKIELSDLNGKTLAIVDLND
VSIILHGSPTAVQLKNLTRCDVQSFLVNGTVFISECKDCIVNVGCHQLRI
HQSKNCSLWTCSNCAPIIEGCEQMRFGELQIQGRQGHWDDVKDFTWLRED
RSPNWDLLEAIKVFPARPTENQA*
back to top

mRNA from alignment at ScGOVlb_3404:2203231..2204052+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11834.t1 ID=Gvermi11834.t1|Name=Gvermi11834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_3404:2203231..2204052+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATTGACCTCTAAATCTGAGCAGCTTGAGGCGGAGTTTGCTGCACA
GTGTAAACAACTCCGTTGTGCGATAGAAGCGGCAGAGCTGGAGACGCTCC
CGGAAATCAGAGTGCAACTAGAAACGGTAAGGGAATTGCTCGCGCAAGGC
ACCGAATGGTGGACAAAATACGATGTGCGACGCAATTCAGAGGAGCTTGT
TTCTCTTGAATTAAGTGTAGACAACGCATCAAGACGGCTCCGTCCACGAA
GGAGATTTCGGTTTAGCAAGGTGCCACCTTCTGAAAGACCTGCAGTGCAA
CTTGAGGGCAAATCAGCTCTCCAGAAAGAGGCTCTTCCCTTGGGACGGTT
AGGGAACGGACTTGTGGTAGATTCGAGAAGTATTCGGAATGGAAAAATAG
AGCTCAGTGATCTAAACGGTAAGACTTTGGCCATCGTGGATTTGAATGAT
GTGAGCATCATTCTCCATGGAAGTCCAACAGCCGTTCAACTCAAAAATCT
CACCCGCTGCGATGTGCAGAGTTTTCTTGTGAACGGTACCGTGTTTATCT
CGGAATGCAAAGATTGTATTGTAAACGTAGGATGTCATCAACTCCGAATA
CATCAGTCCAAGAACTGTTCCTTATGGACATGCTCCAACTGTGCACCGAT
CATCGAAGGATGCGAGCAAATGCGCTTTGGAGAGTTGCAAATTCAAGGGC
GCCAGGGTCATTGGGATGATGTCAAGGATTTCACCTGGCTACGTGAAGAT
CGTAGTCCAAACTGGGACTTGCTGGAAGCAATAAAGGTCTTTCCGGCACG
CCCTACCGAGAATCAGGCATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2203231..2204052+

>Gvermi11834.t1 ID=Gvermi11834.t1|Name=Gvermi11834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=822bp|location=Sequence derived from alignment at ScGOVlb_3404:2203231..2204052+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATTGACCTCTAAATCTGAGCAGCTTGAGGCGGAGTTTGCTGCACA
GTGTAAACAACTCCGTTGTGCGATAGAAGCGGCAGAGCTGGAGACGCTCC
CGGAAATCAGAGTGCAACTAGAAACGGTAAGGGAATTGCTCGCGCAAGGC
ACCGAATGGTGGACAAAATACGATGTGCGACGCAATTCAGAGGAGCTTGT
TTCTCTTGAATTAAGTGTAGACAACGCATCAAGACGGCTCCGTCCACGAA
GGAGATTTCGGTTTAGCAAGGTGCCACCTTCTGAAAGACCTGCAGTGCAA
CTTGAGGGCAAATCAGCTCTCCAGAAAGAGGCTCTTCCCTTGGGACGGTT
AGGGAACGGACTTGTGGTAGATTCGAGAAGTATTCGGAATGGAAAAATAG
AGCTCAGTGATCTAAACGGTAAGACTTTGGCCATCGTGGATTTGAATGAT
GTGAGCATCATTCTCCATGGAAGTCCAACAGCCGTTCAACTCAAAAATCT
CACCCGCTGCGATGTGCAGAGTTTTCTTGTGAACGGTACCGTGTTTATCT
CGGAATGCAAAGATTGTATTGTAAACGTAGGATGTCATCAACTCCGAATA
CATCAGTCCAAGAACTGTTCCTTATGGACATGCTCCAACTGTGCACCGAT
CATCGAAGGATGCGAGCAAATGCGCTTTGGAGAGTTGCAAATTCAAGGGC
GCCAGGGTCATTGGGATGATGTCAAGGATTTCACCTGGCTACGTGAAGAT
CGTAGTCCAAACTGGGACTTGCTGGAAGCAATAAAGGTCTTTCCGGCACG
CCCTACCGAGAATCAGGCATAA
back to top