Gvermi11833.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11833.t1
Unique NameGvermi11833.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2200958..2202547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11833Gvermi11833Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2200958..2202547 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11833.t1.start1Gvermi11833.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2200958..2200960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11833.t1.CDS1Gvermi11833.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2200958..2202547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11833.t1.exon1Gvermi11833.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2200958..2202547 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11833.t1.stop1Gvermi11833.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2202545..2202547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11833.t1Gvermi11833.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2200958..2202547 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11833.t1 ID=Gvermi11833.t1|Name=Gvermi11833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=530bp
MHRPRRAHRPLRKRPRLEDLADEEPESSSEATSSSESSDASPPPDFAADA
DEEHGYTSSLQQKPPLKPRSARPSRLAKPRSFLDAVRPYVAPMSKDAIKL
SKLTMAEISAGAAYRGPLVVTEADRAEVQTAHAAAAKLAEYDSDEHVEDR
EQVLPQVQTRPYSLKKQTRSDRHAHSNSDSELSPETCSETDGTTHIADSP
QDSPHSERRSNACLGDDSRAKPRKASGYEPEKDSSPPKFVLRLVRNDKVD
SGNRSSRSDTDDAEVYPDDTSENSVHEPTSAVDNASKQGVIASQHGHHSE
FNQGKSHQEKYSKIKNFNSRQIHLDCHPSNAGDHATDYSRRDIPHNVVSR
ENIDRVVRADPGETPCPRAHPSSTLPKPAKVFGRSGGSTDINENRNCHRN
EVEPTAVSRVIDFIDLCQNENRDVRTSRRRPETVQTHSDVSYSINRTENT
SVMPQFVAPSRVLDFIDLSGEEREDRGEKEAPTQLQTEVFDLCSDDDDLE
EENSPPIEISRDPTTRLRAWLEDRAFHAF*
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spliced messenger RNA

>Gvermi11833.t1 ID=Gvermi11833.t1|Name=Gvermi11833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at ScGOVlb_3404:2200958..2202547+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGTCCGCGCCGCGCCCATCGCCCTCTCCGCAAACGACCCCGTCT
AGAGGACCTCGCCGATGAAGAGCCCGAATCCTCGAGCGAAGCAACGTCCT
CTTCAGAGTCCTCAGACGCCTCTCCACCCCCCGACTTTGCCGCCGATGCT
GACGAGGAACACGGCTACACTTCTTCGCTTCAACAAAAACCGCCCCTAAA
GCCGCGCTCCGCCCGTCCCTCGCGCCTTGCCAAACCGCGTTCTTTTCTCG
ATGCAGTCAGACCCTATGTCGCGCCCATGTCGAAGGATGCCATCAAGCTC
AGCAAGCTTACAATGGCAGAGATAAGCGCTGGCGCTGCTTATCGCGGTCC
CCTCGTTGTCACTGAGGCGGATCGGGCTGAAGTACAAACTGCTCATGCCG
CCGCTGCGAAACTTGCGGAGTACGATAGCGATGAGCACGTTGAGGACCGA
GAACAAGTTCTGCCTCAAGTGCAAACGCGCCCATATTCGTTGAAGAAGCA
AACCCGCTCAGATAGACATGCGCACTCTAACTCCGATTCCGAACTATCCC
CCGAAACCTGTTCTGAAACTGATGGTACAACTCACATTGCCGATTCACCA
CAAGATTCTCCTCATTCAGAAAGACGCTCCAACGCGTGCCTCGGTGATGA
TTCGAGAGCGAAACCGCGTAAGGCATCTGGGTACGAGCCGGAGAAAGATA
GTTCTCCTCCGAAATTTGTGTTGCGCCTTGTTCGAAACGACAAAGTTGAT
TCAGGAAATCGCTCCAGCCGCAGTGACACAGACGACGCAGAAGTCTATCC
CGACGATACATCGGAAAACTCCGTCCACGAGCCGACTTCCGCGGTTGACA
ACGCATCCAAGCAGGGCGTCATTGCCTCACAACATGGTCACCATTCTGAG
TTCAACCAGGGGAAAAGTCACCAAGAGAAATATTCGAAGATCAAGAATTT
CAACAGCAGGCAGATCCACTTAGACTGCCACCCTAGCAATGCCGGTGACC
ACGCGACAGATTATTCTCGGAGAGATATACCACACAACGTGGTTTCGCGG
GAAAACATCGATCGAGTGGTTCGGGCTGACCCTGGAGAGACTCCATGCCC
ACGTGCACATCCTTCTTCGACCCTTCCAAAACCTGCAAAAGTCTTTGGAC
GCAGCGGCGGCTCCACCGATATCAACGAAAACAGAAACTGCCATCGGAAT
GAAGTGGAGCCTACCGCTGTTTCTCGTGTGATTGATTTCATTGATCTTTG
CCAGAATGAAAACCGCGATGTGAGAACATCCCGTCGACGGCCAGAGACAG
TGCAGACGCACAGTGATGTGAGTTATTCCATAAACAGAACGGAAAACACG
TCTGTCATGCCGCAGTTTGTAGCACCATCTCGTGTTCTGGACTTCATCGA
CCTGAGTGGCGAAGAACGAGAAGACCGAGGGGAGAAGGAAGCACCAACCC
AATTGCAAACCGAAGTATTTGATCTATGTTCAGATGATGATGATTTAGAG
GAAGAGAATTCGCCGCCGATAGAGATAAGTCGCGATCCAACAACTAGGCT
GCGTGCCTGGCTCGAGGATAGAGCATTCCATGCGTTCTGA
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protein sequence of Gvermi11833.t1

>Gvermi11833.t1 ID=Gvermi11833.t1|Name=Gvermi11833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=530bp
MHRPRRAHRPLRKRPRLEDLADEEPESSSEATSSSESSDASPPPDFAADA
DEEHGYTSSLQQKPPLKPRSARPSRLAKPRSFLDAVRPYVAPMSKDAIKL
SKLTMAEISAGAAYRGPLVVTEADRAEVQTAHAAAAKLAEYDSDEHVEDR
EQVLPQVQTRPYSLKKQTRSDRHAHSNSDSELSPETCSETDGTTHIADSP
QDSPHSERRSNACLGDDSRAKPRKASGYEPEKDSSPPKFVLRLVRNDKVD
SGNRSSRSDTDDAEVYPDDTSENSVHEPTSAVDNASKQGVIASQHGHHSE
FNQGKSHQEKYSKIKNFNSRQIHLDCHPSNAGDHATDYSRRDIPHNVVSR
ENIDRVVRADPGETPCPRAHPSSTLPKPAKVFGRSGGSTDINENRNCHRN
EVEPTAVSRVIDFIDLCQNENRDVRTSRRRPETVQTHSDVSYSINRTENT
SVMPQFVAPSRVLDFIDLSGEEREDRGEKEAPTQLQTEVFDLCSDDDDLE
EENSPPIEISRDPTTRLRAWLEDRAFHAF*
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mRNA from alignment at ScGOVlb_3404:2200958..2202547+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11833.t1 ID=Gvermi11833.t1|Name=Gvermi11833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at ScGOVlb_3404:2200958..2202547+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGTCCGCGCCGCGCCCATCGCCCTCTCCGCAAACGACCCCGTCT
AGAGGACCTCGCCGATGAAGAGCCCGAATCCTCGAGCGAAGCAACGTCCT
CTTCAGAGTCCTCAGACGCCTCTCCACCCCCCGACTTTGCCGCCGATGCT
GACGAGGAACACGGCTACACTTCTTCGCTTCAACAAAAACCGCCCCTAAA
GCCGCGCTCCGCCCGTCCCTCGCGCCTTGCCAAACCGCGTTCTTTTCTCG
ATGCAGTCAGACCCTATGTCGCGCCCATGTCGAAGGATGCCATCAAGCTC
AGCAAGCTTACAATGGCAGAGATAAGCGCTGGCGCTGCTTATCGCGGTCC
CCTCGTTGTCACTGAGGCGGATCGGGCTGAAGTACAAACTGCTCATGCCG
CCGCTGCGAAACTTGCGGAGTACGATAGCGATGAGCACGTTGAGGACCGA
GAACAAGTTCTGCCTCAAGTGCAAACGCGCCCATATTCGTTGAAGAAGCA
AACCCGCTCAGATAGACATGCGCACTCTAACTCCGATTCCGAACTATCCC
CCGAAACCTGTTCTGAAACTGATGGTACAACTCACATTGCCGATTCACCA
CAAGATTCTCCTCATTCAGAAAGACGCTCCAACGCGTGCCTCGGTGATGA
TTCGAGAGCGAAACCGCGTAAGGCATCTGGGTACGAGCCGGAGAAAGATA
GTTCTCCTCCGAAATTTGTGTTGCGCCTTGTTCGAAACGACAAAGTTGAT
TCAGGAAATCGCTCCAGCCGCAGTGACACAGACGACGCAGAAGTCTATCC
CGACGATACATCGGAAAACTCCGTCCACGAGCCGACTTCCGCGGTTGACA
ACGCATCCAAGCAGGGCGTCATTGCCTCACAACATGGTCACCATTCTGAG
TTCAACCAGGGGAAAAGTCACCAAGAGAAATATTCGAAGATCAAGAATTT
CAACAGCAGGCAGATCCACTTAGACTGCCACCCTAGCAATGCCGGTGACC
ACGCGACAGATTATTCTCGGAGAGATATACCACACAACGTGGTTTCGCGG
GAAAACATCGATCGAGTGGTTCGGGCTGACCCTGGAGAGACTCCATGCCC
ACGTGCACATCCTTCTTCGACCCTTCCAAAACCTGCAAAAGTCTTTGGAC
GCAGCGGCGGCTCCACCGATATCAACGAAAACAGAAACTGCCATCGGAAT
GAAGTGGAGCCTACCGCTGTTTCTCGTGTGATTGATTTCATTGATCTTTG
CCAGAATGAAAACCGCGATGTGAGAACATCCCGTCGACGGCCAGAGACAG
TGCAGACGCACAGTGATGTGAGTTATTCCATAAACAGAACGGAAAACACG
TCTGTCATGCCGCAGTTTGTAGCACCATCTCGTGTTCTGGACTTCATCGA
CCTGAGTGGCGAAGAACGAGAAGACCGAGGGGAGAAGGAAGCACCAACCC
AATTGCAAACCGAAGTATTTGATCTATGTTCAGATGATGATGATTTAGAG
GAAGAGAATTCGCCGCCGATAGAGATAAGTCGCGATCCAACAACTAGGCT
GCGTGCCTGGCTCGAGGATAGAGCATTCCATGCGTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2200958..2202547+

>Gvermi11833.t1 ID=Gvermi11833.t1|Name=Gvermi11833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1590bp|location=Sequence derived from alignment at ScGOVlb_3404:2200958..2202547+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGTCCGCGCCGCGCCCATCGCCCTCTCCGCAAACGACCCCGTCT
AGAGGACCTCGCCGATGAAGAGCCCGAATCCTCGAGCGAAGCAACGTCCT
CTTCAGAGTCCTCAGACGCCTCTCCACCCCCCGACTTTGCCGCCGATGCT
GACGAGGAACACGGCTACACTTCTTCGCTTCAACAAAAACCGCCCCTAAA
GCCGCGCTCCGCCCGTCCCTCGCGCCTTGCCAAACCGCGTTCTTTTCTCG
ATGCAGTCAGACCCTATGTCGCGCCCATGTCGAAGGATGCCATCAAGCTC
AGCAAGCTTACAATGGCAGAGATAAGCGCTGGCGCTGCTTATCGCGGTCC
CCTCGTTGTCACTGAGGCGGATCGGGCTGAAGTACAAACTGCTCATGCCG
CCGCTGCGAAACTTGCGGAGTACGATAGCGATGAGCACGTTGAGGACCGA
GAACAAGTTCTGCCTCAAGTGCAAACGCGCCCATATTCGTTGAAGAAGCA
AACCCGCTCAGATAGACATGCGCACTCTAACTCCGATTCCGAACTATCCC
CCGAAACCTGTTCTGAAACTGATGGTACAACTCACATTGCCGATTCACCA
CAAGATTCTCCTCATTCAGAAAGACGCTCCAACGCGTGCCTCGGTGATGA
TTCGAGAGCGAAACCGCGTAAGGCATCTGGGTACGAGCCGGAGAAAGATA
GTTCTCCTCCGAAATTTGTGTTGCGCCTTGTTCGAAACGACAAAGTTGAT
TCAGGAAATCGCTCCAGCCGCAGTGACACAGACGACGCAGAAGTCTATCC
CGACGATACATCGGAAAACTCCGTCCACGAGCCGACTTCCGCGGTTGACA
ACGCATCCAAGCAGGGCGTCATTGCCTCACAACATGGTCACCATTCTGAG
TTCAACCAGGGGAAAAGTCACCAAGAGAAATATTCGAAGATCAAGAATTT
CAACAGCAGGCAGATCCACTTAGACTGCCACCCTAGCAATGCCGGTGACC
ACGCGACAGATTATTCTCGGAGAGATATACCACACAACGTGGTTTCGCGG
GAAAACATCGATCGAGTGGTTCGGGCTGACCCTGGAGAGACTCCATGCCC
ACGTGCACATCCTTCTTCGACCCTTCCAAAACCTGCAAAAGTCTTTGGAC
GCAGCGGCGGCTCCACCGATATCAACGAAAACAGAAACTGCCATCGGAAT
GAAGTGGAGCCTACCGCTGTTTCTCGTGTGATTGATTTCATTGATCTTTG
CCAGAATGAAAACCGCGATGTGAGAACATCCCGTCGACGGCCAGAGACAG
TGCAGACGCACAGTGATGTGAGTTATTCCATAAACAGAACGGAAAACACG
TCTGTCATGCCGCAGTTTGTAGCACCATCTCGTGTTCTGGACTTCATCGA
CCTGAGTGGCGAAGAACGAGAAGACCGAGGGGAGAAGGAAGCACCAACCC
AATTGCAAACCGAAGTATTTGATCTATGTTCAGATGATGATGATTTAGAG
GAAGAGAATTCGCCGCCGATAGAGATAAGTCGCGATCCAACAACTAGGCT
GCGTGCCTGGCTCGAGGATAGAGCATTCCATGCGTTCTGA
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