Gvermi11831.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11831.t1
Unique NameGvermi11831.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2195271..2196593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5297.GMQ_06051T0
Preferred nameSEC20
PFAMsSec20
Max annot lvl4751|Fungi
KEGG koko:K08497
KEGG Pathwayko04130,map04130
GOsGO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006886,GO:0006890,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0031201,GO:0031224,GO:0031984,GO:0032991,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048279,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0098796,GO:0098827
Evalue3.94e-05
EggNOG OGs2E0FV@1|root,2S7WD@2759|Eukaryota,39XIV@33154|Opisthokonta,3NXYN@4751|Fungi,3V20Z@5204|Basidiomycota,2YECX@29000|Pucciniomycotina
DescriptionSec20
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11831Gvermi11831Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2195271..2196593 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11831.t1.start1Gvermi11831.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2195271..2195273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11831.t1.CDS1Gvermi11831.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2195271..2196593 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11831.t1.exon1Gvermi11831.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2195271..2196593 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11831.t1.stop1Gvermi11831.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2196591..2196593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11831.t1Gvermi11831.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2195271..2196593 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11831.t1 ID=Gvermi11831.t1|Name=Gvermi11831.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp
MALPTEVAALMKALDTLQTATTSTNIASCSRAVARAADDLELICEETTDP
SISTQLSSYIERARQAVTTARKTARAAALKADRAALIEPPTLEHSESQGT
AGRLAAEINDALRATAAVVSEEIQRSKVAADVVDESTRRLKMTRDQHGVY
AEDVASGGSTLKSIRRTDLIANCVLVLCFALFFVAAAYVANRRLQSSNIA
TFIVRPTYKVVSLPLRITAWLFKTSFSDPDFQPVRPRAPTNSDPPNSMTI
NRRKPPESSKTAAHISSDHAPKKNAVAKKPEAEITKLPHVSMPEQVSNVV
EKRVSNVVEKRVSNVVKKRVSNVVKKRVSNVVRKRVSNVVDKRVSNVVDK
RVSNVVKKRISNVVKKTVPNVVQKSAIVYPAEQALSPARNKIADEKRSPE
QDQHTSHKFEQSAVENTDLELQCVPIIYSLFQNHVTLVSK*
back to top

spliced messenger RNA

>Gvermi11831.t1 ID=Gvermi11831.t1|Name=Gvermi11831.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at ScGOVlb_3404:2195271..2196593+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTCCGACAGAGGTCGCAGCGCTGATGAAAGCGCTGGACACCCT
ACAGACTGCCACAACTTCCACTAACATCGCCTCTTGCTCACGTGCCGTCG
CCCGAGCAGCTGATGATCTTGAGTTGATTTGCGAGGAGACCACTGATCCT
TCAATATCCACTCAACTCTCCTCATACATTGAACGCGCTCGTCAGGCAGT
CACAACTGCGCGAAAAACTGCACGAGCTGCCGCATTGAAAGCCGATCGTG
CTGCCCTTATAGAGCCTCCGACCCTGGAGCACAGCGAATCGCAAGGCACA
GCTGGGAGACTCGCTGCTGAAATCAATGATGCTCTACGCGCAACCGCCGC
CGTCGTCAGCGAGGAGATACAGCGTTCCAAAGTCGCAGCAGATGTTGTCG
ACGAATCTACACGAAGATTGAAAATGACACGCGATCAGCATGGAGTGTAT
GCTGAAGATGTTGCTTCAGGTGGCTCCACTCTCAAATCCATCCGCAGAAC
TGATCTTATCGCCAACTGTGTTCTTGTGCTCTGCTTTGCTCTTTTCTTTG
TCGCGGCAGCATACGTGGCTAATAGAAGATTACAAAGCAGTAACATTGCC
ACCTTTATTGTCAGACCCACTTATAAAGTCGTATCACTTCCTTTGAGGAT
CACCGCCTGGCTTTTCAAAACTTCGTTCTCCGATCCCGACTTTCAACCCG
TGCGGCCGAGGGCCCCAACGAATTCTGACCCACCGAATTCCATGACCATT
AATCGCAGAAAGCCACCGGAATCATCTAAGACCGCGGCTCACATATCTTC
AGATCACGCGCCAAAAAAAAATGCGGTGGCAAAGAAACCGGAGGCAGAGA
TCACAAAGCTTCCCCACGTATCTATGCCGGAACAAGTCTCCAATGTGGTT
GAGAAAAGAGTCTCCAATGTGGTTGAGAAAAGAGTCTCCAATGTGGTTAA
GAAAAGAGTTTCCAATGTGGTTAAGAAAAGAGTTTCCAATGTGGTTAGGA
AAAGAGTCTCCAATGTGGTTGATAAAAGAGTCTCCAATGTGGTTGATAAA
AGAGTCTCAAATGTGGTTAAGAAAAGAATCTCGAATGTGGTTAAGAAAAC
AGTCCCCAATGTGGTTCAGAAAAGCGCGATTGTCTATCCTGCTGAACAAG
CTTTGTCTCCCGCACGAAACAAGATTGCAGATGAAAAGAGAAGTCCCGAG
CAGGATCAGCATACTTCACATAAGTTCGAACAAAGTGCAGTTGAGAATAC
CGATTTAGAGCTACAGTGCGTTCCAATAATatacagtctgtttcaaaatc
atgtcacgttggtgtcgaagtaa
back to top

protein sequence of Gvermi11831.t1

>Gvermi11831.t1 ID=Gvermi11831.t1|Name=Gvermi11831.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=441bp
MALPTEVAALMKALDTLQTATTSTNIASCSRAVARAADDLELICEETTDP
SISTQLSSYIERARQAVTTARKTARAAALKADRAALIEPPTLEHSESQGT
AGRLAAEINDALRATAAVVSEEIQRSKVAADVVDESTRRLKMTRDQHGVY
AEDVASGGSTLKSIRRTDLIANCVLVLCFALFFVAAAYVANRRLQSSNIA
TFIVRPTYKVVSLPLRITAWLFKTSFSDPDFQPVRPRAPTNSDPPNSMTI
NRRKPPESSKTAAHISSDHAPKKNAVAKKPEAEITKLPHVSMPEQVSNVV
EKRVSNVVEKRVSNVVKKRVSNVVKKRVSNVVRKRVSNVVDKRVSNVVDK
RVSNVVKKRISNVVKKTVPNVVQKSAIVYPAEQALSPARNKIADEKRSPE
QDQHTSHKFEQSAVENTDLELQCVPIIYSLFQNHVTLVSK*
back to top

mRNA from alignment at ScGOVlb_3404:2195271..2196593+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11831.t1 ID=Gvermi11831.t1|Name=Gvermi11831.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at ScGOVlb_3404:2195271..2196593+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTTCCGACAGAGGTCGCAGCGCTGATGAAAGCGCTGGACACCCT
ACAGACTGCCACAACTTCCACTAACATCGCCTCTTGCTCACGTGCCGTCG
CCCGAGCAGCTGATGATCTTGAGTTGATTTGCGAGGAGACCACTGATCCT
TCAATATCCACTCAACTCTCCTCATACATTGAACGCGCTCGTCAGGCAGT
CACAACTGCGCGAAAAACTGCACGAGCTGCCGCATTGAAAGCCGATCGTG
CTGCCCTTATAGAGCCTCCGACCCTGGAGCACAGCGAATCGCAAGGCACA
GCTGGGAGACTCGCTGCTGAAATCAATGATGCTCTACGCGCAACCGCCGC
CGTCGTCAGCGAGGAGATACAGCGTTCCAAAGTCGCAGCAGATGTTGTCG
ACGAATCTACACGAAGATTGAAAATGACACGCGATCAGCATGGAGTGTAT
GCTGAAGATGTTGCTTCAGGTGGCTCCACTCTCAAATCCATCCGCAGAAC
TGATCTTATCGCCAACTGTGTTCTTGTGCTCTGCTTTGCTCTTTTCTTTG
TCGCGGCAGCATACGTGGCTAATAGAAGATTACAAAGCAGTAACATTGCC
ACCTTTATTGTCAGACCCACTTATAAAGTCGTATCACTTCCTTTGAGGAT
CACCGCCTGGCTTTTCAAAACTTCGTTCTCCGATCCCGACTTTCAACCCG
TGCGGCCGAGGGCCCCAACGAATTCTGACCCACCGAATTCCATGACCATT
AATCGCAGAAAGCCACCGGAATCATCTAAGACCGCGGCTCACATATCTTC
AGATCACGCGCCAAAAAAAAATGCGGTGGCAAAGAAACCGGAGGCAGAGA
TCACAAAGCTTCCCCACGTATCTATGCCGGAACAAGTCTCCAATGTGGTT
GAGAAAAGAGTCTCCAATGTGGTTGAGAAAAGAGTCTCCAATGTGGTTAA
GAAAAGAGTTTCCAATGTGGTTAAGAAAAGAGTTTCCAATGTGGTTAGGA
AAAGAGTCTCCAATGTGGTTGATAAAAGAGTCTCCAATGTGGTTGATAAA
AGAGTCTCAAATGTGGTTAAGAAAAGAATCTCGAATGTGGTTAAGAAAAC
AGTCCCCAATGTGGTTCAGAAAAGCGCGATTGTCTATCCTGCTGAACAAG
CTTTGTCTCCCGCACGAAACAAGATTGCAGATGAAAAGAGAAGTCCCGAG
CAGGATCAGCATACTTCACATAAGTTCGAACAAAGTGCAGTTGAGAATAC
CGATTTAGAGCTACAGTGCGTTCCAATAATatacagtctgtttcaaaatc
atgtcacgttggtgtcgaagtaa
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2195271..2196593+

>Gvermi11831.t1 ID=Gvermi11831.t1|Name=Gvermi11831.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1323bp|location=Sequence derived from alignment at ScGOVlb_3404:2195271..2196593+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTTCCGACAGAGGTCGCAGCGCTGATGAAAGCGCTGGACACCCT
ACAGACTGCCACAACTTCCACTAACATCGCCTCTTGCTCACGTGCCGTCG
CCCGAGCAGCTGATGATCTTGAGTTGATTTGCGAGGAGACCACTGATCCT
TCAATATCCACTCAACTCTCCTCATACATTGAACGCGCTCGTCAGGCAGT
CACAACTGCGCGAAAAACTGCACGAGCTGCCGCATTGAAAGCCGATCGTG
CTGCCCTTATAGAGCCTCCGACCCTGGAGCACAGCGAATCGCAAGGCACA
GCTGGGAGACTCGCTGCTGAAATCAATGATGCTCTACGCGCAACCGCCGC
CGTCGTCAGCGAGGAGATACAGCGTTCCAAAGTCGCAGCAGATGTTGTCG
ACGAATCTACACGAAGATTGAAAATGACACGCGATCAGCATGGAGTGTAT
GCTGAAGATGTTGCTTCAGGTGGCTCCACTCTCAAATCCATCCGCAGAAC
TGATCTTATCGCCAACTGTGTTCTTGTGCTCTGCTTTGCTCTTTTCTTTG
TCGCGGCAGCATACGTGGCTAATAGAAGATTACAAAGCAGTAACATTGCC
ACCTTTATTGTCAGACCCACTTATAAAGTCGTATCACTTCCTTTGAGGAT
CACCGCCTGGCTTTTCAAAACTTCGTTCTCCGATCCCGACTTTCAACCCG
TGCGGCCGAGGGCCCCAACGAATTCTGACCCACCGAATTCCATGACCATT
AATCGCAGAAAGCCACCGGAATCATCTAAGACCGCGGCTCACATATCTTC
AGATCACGCGCCAAAAAAAAATGCGGTGGCAAAGAAACCGGAGGCAGAGA
TCACAAAGCTTCCCCACGTATCTATGCCGGAACAAGTCTCCAATGTGGTT
GAGAAAAGAGTCTCCAATGTGGTTGAGAAAAGAGTCTCCAATGTGGTTAA
GAAAAGAGTTTCCAATGTGGTTAAGAAAAGAGTTTCCAATGTGGTTAGGA
AAAGAGTCTCCAATGTGGTTGATAAAAGAGTCTCCAATGTGGTTGATAAA
AGAGTCTCAAATGTGGTTAAGAAAAGAATCTCGAATGTGGTTAAGAAAAC
AGTCCCCAATGTGGTTCAGAAAAGCGCGATTGTCTATCCTGCTGAACAAG
CTTTGTCTCCCGCACGAAACAAGATTGCAGATGAAAAGAGAAGTCCCGAG
CAGGATCAGCATACTTCACATAAGTTCGAACAAAGTGCAGTTGAGAATAC
CGATTTAGAGCTACAGTGCGTTCCAATAATatacagtctgtttcaaaatc
atgtcacgttggtgtcgaagtaa
back to top