Gvermi11828.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11828.t1
Unique NameGvermi11828.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2187975..2188718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5808.XP_002139128.1
PFAMsNUDIX
Max annot lvl5794|Apicomplexa
KEGG rclassRC00002
KEGG koko:K01515
KEGG ReactionR01054
KEGG Pathwayko00230,map00230
Evalue1.48e-37
EggNOG OGsCOG0494@1|root,KOG3041@2759|Eukaryota,3YAS3@5794|Apicomplexa,3YKXC@5796|Coccidia
EC3.6.1.13
DescriptionHydrolase, NUDIX family
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11828Gvermi11828Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2187975..2188718 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11828.t1.start1Gvermi11828.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2187975..2187977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11828.t1.CDS1Gvermi11828.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2187975..2188718 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11828.t1.exon1Gvermi11828.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2187975..2188718 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11828.t1.stop1Gvermi11828.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2188716..2188718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11828.t1Gvermi11828.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2187975..2188718 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11828.t1 ID=Gvermi11828.t1|Name=Gvermi11828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=248bp
MRFLTSLRLAASSYFRNTITPNMSNTGRETEPPIASLIRREARTHACVRG
AVHPPGTQTVASTRWLKLQTLRYRFEHDEAGRFARRWDAANRTTRTGAGV
DAVVVLARLRLADGVWRVLLVKQFRPPLNAVSVELPAGLVDEGESVEQAA
VRELREETGFRGRVWRVHPGAALSPGISAENVALVEVEIEGATGGQELDG
SENIEVVSVPLNRLEEGLDHMVKTEGVVVMHAVSTLAVGVRLGLSPR*
back to top

spliced messenger RNA

>Gvermi11828.t1 ID=Gvermi11828.t1|Name=Gvermi11828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:2187975..2188718+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTTCTCACGTCGCTCCGGCTGGCCGCATCCTCATACTTCCGAAA
CACAATCACACCAAACATGTCAAACACGGGGCGCGAAACGGAGCCACCCA
TCGCCTCGCTGATACGGCGAGAGGCGCGCACGCATGCGTGCGTGCGCGGG
GCAGTACATCCGCCCGGCACGCAAACCGTGGCGAGCACGCGGTGGCTCAA
GCTGCAGACGCTGCGCTATCGCTTCGAGCACGACGAGGCGGGGCGCTTCG
CGCGGCGGTGGGACGCTGCAAACCGGACCACGCGCACGGGCGCTGGGGTG
GATGCCGTGGTGGTGCTGGCGCGGCTCCGCCTGGCGGATGGCGTTTGGCG
GGTGCTGCTGGTGAAGCAGTTTCGGCCGCCGCTGAACGCGGTGAGCGTGG
AACTGCCTGCGGGGCTGGTGGACGAAGGCGAGAGCGTGGAGCAGGCAGCC
GTGAGGGAACTGCGCGAAGAAACCGGGTTTCGGGGCCGCGTCTGGCGTGT
GCACCCCGGCGCCGCTCTGTCGCCCGGGATAAGCGCCGAAAATGTGGCAC
TGGTTGAAGTGGAGATCGAGGGAGCCACTGGCGGGCAGGAGCTGGACGGC
AGTGAGAACATTGAAGTGGTAAGCGTGCCTCTGAATCGGCTGGAGGAGGG
GTTGGATCATATGGTGAAGACGGAGGGTGTTGTGGTGATGCACGCTGTGT
CAACTCTTGCAGTAGGTGTTCGGTTGGGACTATCGCCTCGGTAG
back to top

protein sequence of Gvermi11828.t1

>Gvermi11828.t1 ID=Gvermi11828.t1|Name=Gvermi11828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MRFLTSLRLAASSYFRNTITPNMSNTGRETEPPIASLIRREARTHACVRG
AVHPPGTQTVASTRWLKLQTLRYRFEHDEAGRFARRWDAANRTTRTGAGV
DAVVVLARLRLADGVWRVLLVKQFRPPLNAVSVELPAGLVDEGESVEQAA
VRELREETGFRGRVWRVHPGAALSPGISAENVALVEVEIEGATGGQELDG
SENIEVVSVPLNRLEEGLDHMVKTEGVVVMHAVSTLAVGVRLGLSPR*
back to top

mRNA from alignment at ScGOVlb_3404:2187975..2188718+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11828.t1 ID=Gvermi11828.t1|Name=Gvermi11828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:2187975..2188718+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTTCTCACGTCGCTCCGGCTGGCCGCATCCTCATACTTCCGAAA
CACAATCACACCAAACATGTCAAACACGGGGCGCGAAACGGAGCCACCCA
TCGCCTCGCTGATACGGCGAGAGGCGCGCACGCATGCGTGCGTGCGCGGG
GCAGTACATCCGCCCGGCACGCAAACCGTGGCGAGCACGCGGTGGCTCAA
GCTGCAGACGCTGCGCTATCGCTTCGAGCACGACGAGGCGGGGCGCTTCG
CGCGGCGGTGGGACGCTGCAAACCGGACCACGCGCACGGGCGCTGGGGTG
GATGCCGTGGTGGTGCTGGCGCGGCTCCGCCTGGCGGATGGCGTTTGGCG
GGTGCTGCTGGTGAAGCAGTTTCGGCCGCCGCTGAACGCGGTGAGCGTGG
AACTGCCTGCGGGGCTGGTGGACGAAGGCGAGAGCGTGGAGCAGGCAGCC
GTGAGGGAACTGCGCGAAGAAACCGGGTTTCGGGGCCGCGTCTGGCGTGT
GCACCCCGGCGCCGCTCTGTCGCCCGGGATAAGCGCCGAAAATGTGGCAC
TGGTTGAAGTGGAGATCGAGGGAGCCACTGGCGGGCAGGAGCTGGACGGC
AGTGAGAACATTGAAGTGGTAAGCGTGCCTCTGAATCGGCTGGAGGAGGG
GTTGGATCATATGGTGAAGACGGAGGGTGTTGTGGTGATGCACGCTGTGT
CAACTCTTGCAGTAGGTGTTCGGTTGGGACTATCGCCTCGGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2187975..2188718+

>Gvermi11828.t1 ID=Gvermi11828.t1|Name=Gvermi11828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:2187975..2188718+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTTCTCACGTCGCTCCGGCTGGCCGCATCCTCATACTTCCGAAA
CACAATCACACCAAACATGTCAAACACGGGGCGCGAAACGGAGCCACCCA
TCGCCTCGCTGATACGGCGAGAGGCGCGCACGCATGCGTGCGTGCGCGGG
GCAGTACATCCGCCCGGCACGCAAACCGTGGCGAGCACGCGGTGGCTCAA
GCTGCAGACGCTGCGCTATCGCTTCGAGCACGACGAGGCGGGGCGCTTCG
CGCGGCGGTGGGACGCTGCAAACCGGACCACGCGCACGGGCGCTGGGGTG
GATGCCGTGGTGGTGCTGGCGCGGCTCCGCCTGGCGGATGGCGTTTGGCG
GGTGCTGCTGGTGAAGCAGTTTCGGCCGCCGCTGAACGCGGTGAGCGTGG
AACTGCCTGCGGGGCTGGTGGACGAAGGCGAGAGCGTGGAGCAGGCAGCC
GTGAGGGAACTGCGCGAAGAAACCGGGTTTCGGGGCCGCGTCTGGCGTGT
GCACCCCGGCGCCGCTCTGTCGCCCGGGATAAGCGCCGAAAATGTGGCAC
TGGTTGAAGTGGAGATCGAGGGAGCCACTGGCGGGCAGGAGCTGGACGGC
AGTGAGAACATTGAAGTGGTAAGCGTGCCTCTGAATCGGCTGGAGGAGGG
GTTGGATCATATGGTGAAGACGGAGGGTGTTGTGGTGATGCACGCTGTGT
CAACTCTTGCAGTAGGTGTTCGGTTGGGACTATCGCCTCGGTAG
back to top