Gvermi11824.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11824.t1
Unique Name	Gvermi11824.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	603

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2177003..2178811 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	40483.S8EAV7
Preferred name	RIT1
PFAMs	Init_tRNA_PT,Rit1_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K15463
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043399,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Evalue	4.3e-50
EggNOG OGs	KOG2634@1\|root,KOG2634@2759\|Eukaryota,38EDQ@33154\|Opisthokonta,3NVWI@4751\|Fungi,3V12G@5204\|Basidiomycota,22896@155619\|Agaricomycetes,3H47A@355688\|Agaricomycetes incertae sedis
Description	Initiator tRNA phosphoribosyl transferase
COG category	A
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11824	Gvermi11824	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2177003..2178811 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11824.t1.start1	Gvermi11824.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2177003..2177005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11824.t1.CDS1	Gvermi11824.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2177003..2178811 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11824.t1.exon1	Gvermi11824.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2177003..2178811 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11824.t1.stop1	Gvermi11824.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2178809..2178811 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11824.t1	Gvermi11824.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2177003..2178811 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2177003..2178811+
coding sequence from alignment at ScGOVlb_3404:2177003..2178811+

mRNA sequence

>Gvermi11824.t1 ID=Gvermi11824.t1|Name=Gvermi11824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp
MTPTADNQTISTSSERNPPEADRDEQPERVALQLPSRLGAAAYDQNQVLK
SLRSVERGLRARLISIAHDACVALQIYHSLFPHKHVPLFANARAGSWYVP
PLVGQRPTRTAAFKSADGHYGQWSSSLRRPNVHVLHAALTFGAVVLVDVT
RRGKRYPDSFTKTVPIWCAVINNVAALYACKLCEAGQSLCDDCGRVNVHP
DVPESERVQIHNRLPEWLRHWRRSIHTLQSAVPVLGNTRRQFAVKPLRPL
WVNPESSLWQNGIPLHDLDFTPVVCISASHVVPEGERSFIEPSLHEQVVC
GVRFPPRPVGFAYVQGAGDDEEAWCCGLPPQLFWKEFDRLLNIAYAQGIS
TSAMDAEERLRKEIAAIISQPNTVSHSSCHMETGAPIPDIGRRIWDTRII
LRRTSVVDLPRLLRLASAQELHVIVMGTSLKLVFNKEEDPNASGVDWIPL
VDRKGKVDYKFAFGRALGPCLSSLREHCIDRGDSVLICSVDKKGDWCAGL
AIAWLAWHCESASAGQNHGEFEASHGGYSIMLPRRESVGFIEKERVHTTM
LHFMSTFPEFELSRATLKQLNRFFSSPVPSSSLTPPIERSMITSDLKTSH
VS*

spliced messenger RNA

>Gvermi11824.t1 ID=Gvermi11824.t1|Name=Gvermi11824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at ScGOVlb_3404:2177003..2178811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCCACCGCGGACAATCAAACAATCAGCACATCCTCCGAGCGCAA
CCCGCCGGAAGCCGATCGCGACGAGCAGCCGGAACGTGTCGCGCTCCAGT
TACCGTCAAGATTGGGCGCAGCTGCCTACGATCAGAACCAAGTCCTGAAG
AGCTTGCGCAGCGTAGAGAGAGGCTTGCGCGCGCGTCTCATTTCCATCGC
ACACGATGCGTGCGTGGCGCTGCAAATCTACCATTCTCTGTTCCCTCACA
AACACGTCCCGCTGTTCGCAAACGCGCGCGCGGGCAGCTGGTACGTCCCG
CCGCTCGTCGGCCAGCGCCCGACGCGCACAGCGGCGTTCAAGAGCGCAGA
CGGCCACTACGGACAGTGGAGCAGTTCCCTGAGGCGGCCAAACGTGCACG
TCTTGCACGCAGCTCTGACTTTTGGTGCAGTTGTGCTCGTCGACGTCACT
CGCCGCGGAAAGCGCTACCCGGACAGTTTCACCAAAACAGTCCCCATCTG
GTGCGCTGTCATCAACAACGTCGCCGCGTTGTACGCGTGCAAGCTTTGTG
AAGCTGGCCAGAGTCTGTGCGACGATTGCGGTCGAGTCAACGTCCATCCC
GATGTTCCGGAGTCGGAAAGAGTGCAGATCCACAACCGACTACCGGAATG
GCTCAGACACTGGCGCCGTTCCATTCATACGCTGCAAAGCGCCGTTCCTG
TTCTCGGCAACACCCGTAGACAATTTGCTGTTAAGCCACTGCGCCCACTC
TGGGTCAACCCCGAAAGCAGCTTATGGCAGAACGGCATTCCACTCCATGA
TCTAGACTTTACCCCGGTGGTGTGCATTTCTGCAAGCCATGTCGTTCCGG
AAGGCGAACGTTCTTTCATAGAGCCATCCCTGCACGAACAAGTAGTGTGT
GGAGTTAGATTCCCGCCGCGTCCTGTGGGCTTTGCGTATGTTCAAGGGGC
TGGAGATGATGAGGAAGCCTGGTGTTGTGGATTGCCGCCGCAGCTTTTCT
GGAAAGAGTTTGACCGACTGTTAAATATAGCATACGCACAAGGCATATCT
ACAAGTGCAATGGATGCTGAGGAGAGACTTCGGAAAGAGATTGCGGCTAT
AATATCACAACCCAACACAGTCTCCCATTCATCTTGTCACATGGAAACCG
GTGCGCCAATTCCCGATATCGGAAGGAGAATATGGGACACACGCATCATA
TTGCGGCGAACGTCGGTTGTGGACCTGCCCAGATTGCTTCGTCTGGCATC
AGCACAAGAGCTCCACGTCATTGTGATGGGGACAAGCCTCAAACTAGTGT
TCAACAAAGAGGAAGACCCTAATGCGAGCGGGGTAGACTGGATACCGTTG
GTCGATAGAAAGGGGAAAGTAGATTATAAATTTGCCTTCGGCAGAGCGTT
AGGACCGTGCTTGTCTTCCCTTCGCGAGCATTGCATAGACCGAGGCGATT
CCGTCTTAATCTGCAGCGTCGACAAAAAGGGTGACTGGTGCGCAGGGCTG
GCAATCGCATGGCTTGCATGGCATTGTGAATCAGCCAGCGCTGGACAAAA
CCACGGAGAATTCGAAGCTTCCCATGGAGGATACTCAATAATGCTTCCAA
GACGAGAAAGTGTCGGGTTTATCGAGAAAGAACGAGTTCATACTACAATG
CTTCACTTCATGAGCACCTTTCCAGAGTTTGAACTGTCGCGAGCAACTCT
TAAACAGCTTAACCGCTTCTTCAGTTCCCCTGTTCCTTCTTCGTCGCTCA
CCCCTCCAATAGAAAGATCGATGATTACATCTGATTTGAAGACATCGCAT
GTCTCGTAA

protein sequence of Gvermi11824.t1

>Gvermi11824.t1 ID=Gvermi11824.t1|Name=Gvermi11824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=603bp
MTPTADNQTISTSSERNPPEADRDEQPERVALQLPSRLGAAAYDQNQVLK
SLRSVERGLRARLISIAHDACVALQIYHSLFPHKHVPLFANARAGSWYVP
PLVGQRPTRTAAFKSADGHYGQWSSSLRRPNVHVLHAALTFGAVVLVDVT
RRGKRYPDSFTKTVPIWCAVINNVAALYACKLCEAGQSLCDDCGRVNVHP
DVPESERVQIHNRLPEWLRHWRRSIHTLQSAVPVLGNTRRQFAVKPLRPL
WVNPESSLWQNGIPLHDLDFTPVVCISASHVVPEGERSFIEPSLHEQVVC
GVRFPPRPVGFAYVQGAGDDEEAWCCGLPPQLFWKEFDRLLNIAYAQGIS
TSAMDAEERLRKEIAAIISQPNTVSHSSCHMETGAPIPDIGRRIWDTRII
LRRTSVVDLPRLLRLASAQELHVIVMGTSLKLVFNKEEDPNASGVDWIPL
VDRKGKVDYKFAFGRALGPCLSSLREHCIDRGDSVLICSVDKKGDWCAGL
AIAWLAWHCESASAGQNHGEFEASHGGYSIMLPRRESVGFIEKERVHTTM
LHFMSTFPEFELSRATLKQLNRFFSSPVPSSSLTPPIERSMITSDLKTSH
VS*

mRNA from alignment at ScGOVlb_3404:2177003..2178811+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11824.t1 ID=Gvermi11824.t1|Name=Gvermi11824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at ScGOVlb_3404:2177003..2178811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCCACCGCGGACAATCAAACAATCAGCACATCCTCCGAGCGCAA
CCCGCCGGAAGCCGATCGCGACGAGCAGCCGGAACGTGTCGCGCTCCAGT
TACCGTCAAGATTGGGCGCAGCTGCCTACGATCAGAACCAAGTCCTGAAG
AGCTTGCGCAGCGTAGAGAGAGGCTTGCGCGCGCGTCTCATTTCCATCGC
ACACGATGCGTGCGTGGCGCTGCAAATCTACCATTCTCTGTTCCCTCACA
AACACGTCCCGCTGTTCGCAAACGCGCGCGCGGGCAGCTGGTACGTCCCG
CCGCTCGTCGGCCAGCGCCCGACGCGCACAGCGGCGTTCAAGAGCGCAGA
CGGCCACTACGGACAGTGGAGCAGTTCCCTGAGGCGGCCAAACGTGCACG
TCTTGCACGCAGCTCTGACTTTTGGTGCAGTTGTGCTCGTCGACGTCACT
CGCCGCGGAAAGCGCTACCCGGACAGTTTCACCAAAACAGTCCCCATCTG
GTGCGCTGTCATCAACAACGTCGCCGCGTTGTACGCGTGCAAGCTTTGTG
AAGCTGGCCAGAGTCTGTGCGACGATTGCGGTCGAGTCAACGTCCATCCC
GATGTTCCGGAGTCGGAAAGAGTGCAGATCCACAACCGACTACCGGAATG
GCTCAGACACTGGCGCCGTTCCATTCATACGCTGCAAAGCGCCGTTCCTG
TTCTCGGCAACACCCGTAGACAATTTGCTGTTAAGCCACTGCGCCCACTC
TGGGTCAACCCCGAAAGCAGCTTATGGCAGAACGGCATTCCACTCCATGA
TCTAGACTTTACCCCGGTGGTGTGCATTTCTGCAAGCCATGTCGTTCCGG
AAGGCGAACGTTCTTTCATAGAGCCATCCCTGCACGAACAAGTAGTGTGT
GGAGTTAGATTCCCGCCGCGTCCTGTGGGCTTTGCGTATGTTCAAGGGGC
TGGAGATGATGAGGAAGCCTGGTGTTGTGGATTGCCGCCGCAGCTTTTCT
GGAAAGAGTTTGACCGACTGTTAAATATAGCATACGCACAAGGCATATCT
ACAAGTGCAATGGATGCTGAGGAGAGACTTCGGAAAGAGATTGCGGCTAT
AATATCACAACCCAACACAGTCTCCCATTCATCTTGTCACATGGAAACCG
GTGCGCCAATTCCCGATATCGGAAGGAGAATATGGGACACACGCATCATA
TTGCGGCGAACGTCGGTTGTGGACCTGCCCAGATTGCTTCGTCTGGCATC
AGCACAAGAGCTCCACGTCATTGTGATGGGGACAAGCCTCAAACTAGTGT
TCAACAAAGAGGAAGACCCTAATGCGAGCGGGGTAGACTGGATACCGTTG
GTCGATAGAAAGGGGAAAGTAGATTATAAATTTGCCTTCGGCAGAGCGTT
AGGACCGTGCTTGTCTTCCCTTCGCGAGCATTGCATAGACCGAGGCGATT
CCGTCTTAATCTGCAGCGTCGACAAAAAGGGTGACTGGTGCGCAGGGCTG
GCAATCGCATGGCTTGCATGGCATTGTGAATCAGCCAGCGCTGGACAAAA
CCACGGAGAATTCGAAGCTTCCCATGGAGGATACTCAATAATGCTTCCAA
GACGAGAAAGTGTCGGGTTTATCGAGAAAGAACGAGTTCATACTACAATG
CTTCACTTCATGAGCACCTTTCCAGAGTTTGAACTGTCGCGAGCAACTCT
TAAACAGCTTAACCGCTTCTTCAGTTCCCCTGTTCCTTCTTCGTCGCTCA
CCCCTCCAATAGAAAGATCGATGATTACATCTGATTTGAAGACATCGCAT
GTCTCGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2177003..2178811+

>Gvermi11824.t1 ID=Gvermi11824.t1|Name=Gvermi11824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1809bp|location=Sequence derived from alignment at ScGOVlb_3404:2177003..2178811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCCACCGCGGACAATCAAACAATCAGCACATCCTCCGAGCGCAA
CCCGCCGGAAGCCGATCGCGACGAGCAGCCGGAACGTGTCGCGCTCCAGT
TACCGTCAAGATTGGGCGCAGCTGCCTACGATCAGAACCAAGTCCTGAAG
AGCTTGCGCAGCGTAGAGAGAGGCTTGCGCGCGCGTCTCATTTCCATCGC
ACACGATGCGTGCGTGGCGCTGCAAATCTACCATTCTCTGTTCCCTCACA
AACACGTCCCGCTGTTCGCAAACGCGCGCGCGGGCAGCTGGTACGTCCCG
CCGCTCGTCGGCCAGCGCCCGACGCGCACAGCGGCGTTCAAGAGCGCAGA
CGGCCACTACGGACAGTGGAGCAGTTCCCTGAGGCGGCCAAACGTGCACG
TCTTGCACGCAGCTCTGACTTTTGGTGCAGTTGTGCTCGTCGACGTCACT
CGCCGCGGAAAGCGCTACCCGGACAGTTTCACCAAAACAGTCCCCATCTG
GTGCGCTGTCATCAACAACGTCGCCGCGTTGTACGCGTGCAAGCTTTGTG
AAGCTGGCCAGAGTCTGTGCGACGATTGCGGTCGAGTCAACGTCCATCCC
GATGTTCCGGAGTCGGAAAGAGTGCAGATCCACAACCGACTACCGGAATG
GCTCAGACACTGGCGCCGTTCCATTCATACGCTGCAAAGCGCCGTTCCTG
TTCTCGGCAACACCCGTAGACAATTTGCTGTTAAGCCACTGCGCCCACTC
TGGGTCAACCCCGAAAGCAGCTTATGGCAGAACGGCATTCCACTCCATGA
TCTAGACTTTACCCCGGTGGTGTGCATTTCTGCAAGCCATGTCGTTCCGG
AAGGCGAACGTTCTTTCATAGAGCCATCCCTGCACGAACAAGTAGTGTGT
GGAGTTAGATTCCCGCCGCGTCCTGTGGGCTTTGCGTATGTTCAAGGGGC
TGGAGATGATGAGGAAGCCTGGTGTTGTGGATTGCCGCCGCAGCTTTTCT
GGAAAGAGTTTGACCGACTGTTAAATATAGCATACGCACAAGGCATATCT
ACAAGTGCAATGGATGCTGAGGAGAGACTTCGGAAAGAGATTGCGGCTAT
AATATCACAACCCAACACAGTCTCCCATTCATCTTGTCACATGGAAACCG
GTGCGCCAATTCCCGATATCGGAAGGAGAATATGGGACACACGCATCATA
TTGCGGCGAACGTCGGTTGTGGACCTGCCCAGATTGCTTCGTCTGGCATC
AGCACAAGAGCTCCACGTCATTGTGATGGGGACAAGCCTCAAACTAGTGT
TCAACAAAGAGGAAGACCCTAATGCGAGCGGGGTAGACTGGATACCGTTG
GTCGATAGAAAGGGGAAAGTAGATTATAAATTTGCCTTCGGCAGAGCGTT
AGGACCGTGCTTGTCTTCCCTTCGCGAGCATTGCATAGACCGAGGCGATT
CCGTCTTAATCTGCAGCGTCGACAAAAAGGGTGACTGGTGCGCAGGGCTG
GCAATCGCATGGCTTGCATGGCATTGTGAATCAGCCAGCGCTGGACAAAA
CCACGGAGAATTCGAAGCTTCCCATGGAGGATACTCAATAATGCTTCCAA
GACGAGAAAGTGTCGGGTTTATCGAGAAAGAACGAGTTCATACTACAATG
CTTCACTTCATGAGCACCTTTCCAGAGTTTGAACTGTCGCGAGCAACTCT
TAAACAGCTTAACCGCTTCTTCAGTTCCCCTGTTCCTTCTTCGTCGCTCA
CCCCTCCAATAGAAAGATCGATGATTACATCTGATTTGAAGACATCGCAT
GTCTCGTAA