Gvermi11821.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11821.t1
Unique NameGvermi11821.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2172595..2174197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD13446
Preferred nameCCNA2
PFAMsCyclin_C,Cyclin_N,Cyclin_N2
Max annot lvl2759|Eukaryota
KEGG koko:K06627,ko:K14521,ko:K14611,ko:K21777
KEGG TC2.A.40.6
KEGG Pathwayko03008,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map03008,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000083,GO:0000086,GO:0000278,GO:0000280,GO:0000307,GO:0000819,GO:0001932,GO:0001939,GO:0001940,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007405,GO:0007422,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008356,GO:0009058,GO:0009059,GO:0009555,GO:0009556,GO:0009653,GO:0009790,GO:0009791,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010101,GO:0010102,GO:0010311,GO:0010374,GO:0010389,GO:0010440,GO:0010444,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0016310,GO:0016538,GO:0016569,GO:0016570,GO:0016572,GO:0016579,GO:0017145,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022622,GO:0023052,GO:0030071,GO:0030154,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033301,GO:0034293,GO:0034641,GO:0034645,GO:0035186,GO:0035556,GO:0035561,GO:0036211,GO:0036445,GO:0042023,GO:0042127,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045120,GO:0045165,GO:0045170,GO:0045448,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045893,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0048103,GO:0048145,GO:0048146,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048364,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048527,GO:0048528,GO:0048580,GO:0048582,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051098,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051321,GO:0051338,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0061695,GO:0061982,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072089,GO:0080090,GO:0090068,GO:0090304,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097123,GO:0097124,GO:0098722,GO:0098772,GO:0098813,GO:0099402,GO:0140013,GO:0140014,GO:1901360,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902806,GO:1902808,GO:1902911,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1905818,GO:1905819,GO:1990234,GO:2000026,GO:2000038,GO:2000112,GO:2000123,GO:2000241,GO:2000816,GO:2001141,GO:2001251
Evalue1.82e-20
EggNOG OGsCOG5024@1|root,KOG0654@2759|Eukaryota
Descriptioncell division
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11821Gvermi11821Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2172595..2174197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11821.t1Gvermi11821.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2172595..2174197 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11821.t1.start1Gvermi11821.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2172595..2172597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11821.t1.CDS1Gvermi11821.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2172595..2173274 +
Gvermi11821.t1.CDS2Gvermi11821.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2174176..2174197 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11821.t1.exon1Gvermi11821.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2172595..2173274 +
Gvermi11821.t1.exon2Gvermi11821.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2174176..2174197 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11821.t1.intron1Gvermi11821.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2173275..2174175 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11821.t1.stop1Gvermi11821.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2174195..2174197 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11821.t1 ID=Gvermi11821.t1|Name=Gvermi11821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=234bp
LSLESLVVSNVLQAQSRVPRGFVRPARPNLIDARLREVVVDWLMEVAAEY
AAPSTTLALAVNYLDRMLACSAVTRHSVQPVAVVCMLLACKMDHSDPPSM
VDGVAMCDRAATTATLLAMETTILLRLNFDLNVFTPCSALTLLLRHIVPA
RLHARASSLCAVLAHVAMLHAHLACRPPANIALACVLLGLHVLRARLAPV
LSRAAPDVRRALCASAVVESAVLLWQNPPVVAE*
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spliced messenger RNA

>Gvermi11821.t1 ID=Gvermi11821.t1|Name=Gvermi11821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:2172595..2174197+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgtcgcTCGAGTCGCTCGTCGTGTCCAATGTGCTGCAGGCTCAGTCGCG
CGTGCCGCGCGGCTTCGTGCGCCCCGCACGCCCCAACCTCATCGACGCGC
GCCTGCGCGAGGTCGTCGTGGACTGGCTCATGGAGGTGGCCGCCGAGTAC
GCCGCGCCCAGCACCACCCTCGCGCTGGCCGTCAACTACCTGGATCGCAT
GCTGGCGTGCAGCGCCGTCACGCGCCACTCCGTGCAGCCCGTCGCCGTCG
TGTGCATGCTGCTGGCGTGCAAGATGGACCACTCGGACCCGCCGTCCATG
GTGGACGGCGTCGCCATGTGCGACCGCGCCGCCACCACCGCCACGCTGCT
GGCCATGGAGACCACCATCCTTCTGCGCCTAAACTTCGACCTCAATGTGT
TCACGCCGTGCTCGGCACTCACGCTGCTGCTGCGCCACATTGTGCCCGCC
AGGCTGCACGCGCGCGCCTCATCGCTGTGCGCCGTCCTGGCGCACGTCGC
CATGCTGCACGCGCACCTGGCGTGCCGCCCCCCGGCCAACATCGCCCTGG
CGTGCGTGCTGCTCGGCCTGCACGTGCTGCGCGCCCGCCTCGCGCCCGTG
CTCAGCCGCGCCGCGCCCGACGTGCGCCGCGCCCTGTGCGCCTCCGCCGT
CGTCGAGTCCGCCGTGCTGCTGTGGCAGAATCCCCCTGTGGTCGCCGAAT
AG
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protein sequence of Gvermi11821.t1

>Gvermi11821.t1 ID=Gvermi11821.t1|Name=Gvermi11821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=234bp
LSLESLVVSNVLQAQSRVPRGFVRPARPNLIDARLREVVVDWLMEVAAEY
AAPSTTLALAVNYLDRMLACSAVTRHSVQPVAVVCMLLACKMDHSDPPSM
VDGVAMCDRAATTATLLAMETTILLRLNFDLNVFTPCSALTLLLRHIVPA
RLHARASSLCAVLAHVAMLHAHLACRPPANIALACVLLGLHVLRARLAPV
LSRAAPDVRRALCASAVVESAVLLWQNPPVVAE*
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mRNA from alignment at ScGOVlb_3404:2172595..2174197+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11821.t1 ID=Gvermi11821.t1|Name=Gvermi11821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1603bp|location=Sequence derived from alignment at ScGOVlb_3404:2172595..2174197+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgtcgcTCGAGTCGCTCGTCGTGTCCAATGTGCTGCAGGCTCAGTCGCG
CGTGCCGCGCGGCTTCGTGCGCCCCGCACGCCCCAACCTCATCGACGCGC
GCCTGCGCGAGGTCGTCGTGGACTGGCTCATGGAGGTGGCCGCCGAGTAC
GCCGCGCCCAGCACCACCCTCGCGCTGGCCGTCAACTACCTGGATCGCAT
GCTGGCGTGCAGCGCCGTCACGCGCCACTCCGTGCAGCCCGTCGCCGTCG
TGTGCATGCTGCTGGCGTGCAAGATGGACCACTCGGACCCGCCGTCCATG
GTGGACGGCGTCGCCATGTGCGACCGCGCCGCCACCACCGCCACGCTGCT
GGCCATGGAGACCACCATCCTTCTGCGCCTAAACTTCGACCTCAATGTGT
TCACGCCGTGCTCGGCACTCACGCTGCTGCTGCGCCACATTGTGCCCGCC
AGGCTGCACGCGCGCGCCTCATCGCTGTGCGCCGTCCTGGCGCACGTCGC
CATGCTGCACGCGCACCTGGCGTGCCGCCCCCCGGCCAACATCGCCCTGG
CGTGCGTGCTGCTCGGCCTGCACGTGCTGCGCGCCCGCCTCGCGCCCGTG
CTCAGCCGCGCCGCGCCCGACGTGCGCCGCGCCCTGTGCGCCTCCGCCGT
CGTCGAGTCCGCCGTGCTGCTGTGGCAGAAGTGGCTCGCGCTGCACGACC
CGTGCGCACACTACCCCTGCCGCTGGCTGCTCCGCCGCTGGCCCGACGTG
CACCCGCTCGCCTACTCGCGCGCCGCGCCGCTGCCGCCCGACCAGCTGCG
CCGCGCGCTGCGCGACGCCGTTAGCTGcgccgctgccgccgccgccgccg
ccgccgccgccgctgccgccgcTAGCGCTGGCGCTGgccggccgccgtcg
ccgccgctgcacccaccccagccgctgtcgcgggcggcttggtcgccgtc
accgtcgcagacgagcgcgtcgccgacgccgtcgccgctgtctaccccgc
cgccgccgcggcagcggccgccgccgctggacgatggtgtgcgcgcgcgc
gccgccaccgcggccgccgccgcagcgccgcccacgccgtcgtcggccgc
cACGACGGCGATggcggaggcggaggcggaggccggggcggagacggagg
cggaggTGGCGGCGGCGGTGCGTGCATCGCCGGCGCAGCCCTGAGTGCGG
CGCGCACGCGCTGGCGGGAGCACGCGATGGCGCCGTGCGCTGGCGCGCCG
CGATTGGCGCACGTGGCAACAGACGGGGCGCGCGCGCCGCGCCGCAGACG
CGCTGCGCCGCAGCTTTGGCGGTCGTCGGCGGGCGCCGCCACCTGCCGGC
CGCGTGTCCCCGCGGCGTTGGTCGCTGGCGTGGATGGCCATCGCTGCGTG
CCGCCGCATGACCTCCGTTGCGCCGCACCGCTCCTGCTCATCGACCTGCT
TCCGCCGCGCCCCCTTTTTAACGCGTCTCCCCCGCGCCCCCGTCGCCGCC
TGTCTTTCCGTCTCGTCCCCTCCGCCCGCGCACCAATCTCCCTCCCACTA
ACTGACTCTCGCGCTTCGCCCCTCCCCGTAGTCCCCCTGTGGTCGCCGAA
TAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2172595..2174197+

>Gvermi11821.t1 ID=Gvermi11821.t1|Name=Gvermi11821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:2172595..2174197+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgtcgcTCGAGTCGCTCGTCGTGTCCAATGTGCTGCAGGCTCAGTCGCG
CGTGCCGCGCGGCTTCGTGCGCCCCGCACGCCCCAACCTCATCGACGCGC
GCCTGCGCGAGGTCGTCGTGGACTGGCTCATGGAGGTGGCCGCCGAGTAC
GCCGCGCCCAGCACCACCCTCGCGCTGGCCGTCAACTACCTGGATCGCAT
GCTGGCGTGCAGCGCCGTCACGCGCCACTCCGTGCAGCCCGTCGCCGTCG
TGTGCATGCTGCTGGCGTGCAAGATGGACCACTCGGACCCGCCGTCCATG
GTGGACGGCGTCGCCATGTGCGACCGCGCCGCCACCACCGCCACGCTGCT
GGCCATGGAGACCACCATCCTTCTGCGCCTAAACTTCGACCTCAATGTGT
TCACGCCGTGCTCGGCACTCACGCTGCTGCTGCGCCACATTGTGCCCGCC
AGGCTGCACGCGCGCGCCTCATCGCTGTGCGCCGTCCTGGCGCACGTCGC
CATGCTGCACGCGCACCTGGCGTGCCGCCCCCCGGCCAACATCGCCCTGG
CGTGCGTGCTGCTCGGCCTGCACGTGCTGCGCGCCCGCCTCGCGCCCGTG
CTCAGCCGCGCCGCGCCCGACGTGCGCCGCGCCCTGTGCGCCTCCGCCGT
CGTCGAGTCCGCCGTGCTGCTGTGGCAGAATCCCCCTGTGGTCGCCGAAT
AG
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