Gvermi11816.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11816.t1
Unique NameGvermi11816.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2162016..2162444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra011293.1-P
PFAMsTFIID_30kDa
Max annot lvl35493|Streptophyta
KEGG koko:K03134
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000082,GO:0000123,GO:0000125,GO:0000278,GO:0000428,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0006139,GO:0006325,GO:0006351,GO:0006352,GO:0006355,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006725,GO:0006807,GO:0006915,GO:0006996,GO:0007049,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0012501,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016578,GO:0016579,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0030154,GO:0030331,GO:0030855,GO:0030880,GO:0030914,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033276,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035258,GO:0035264,GO:0036211,GO:0040007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044843,GO:0045935,GO:0046483,GO:0048471,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051098,GO:0051101,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051427,GO:0055029,GO:0060255,GO:0060429,GO:0061008,GO:0061695,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0070365,GO:0070461,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue4.83e-34
EggNOG OGsCOG5162@1|root,KOG3423@2759|Eukaryota,37UC7@33090|Viridiplantae,3GIP3@35493|Streptophyta,3I05D@3699|Brassicales
DescriptionTAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11816Gvermi11816Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2162016..2162444 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11816.t1.start1Gvermi11816.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2162016..2162018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11816.t1.CDS1Gvermi11816.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2162016..2162444 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11816.t1.exon1Gvermi11816.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2162016..2162444 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11816.t1.stop1Gvermi11816.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2162442..2162444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11816.t1Gvermi11816.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2162016..2162444 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11816.t1 ID=Gvermi11816.t1|Name=Gvermi11816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=143bp
MDSINTQQERQELEKFVASLDEYSPTLPDNLVTHFLNRAGFQSEDIRVRR
LIALATQKFIADVANESIARSRMRLAAVPAPKKGREFMKLVLTMEDLESA
LREFGVNVKKPPYFADSTTAGEEHVVVPKANQAQPNTPKPKT*
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spliced messenger RNA

>Gvermi11816.t1 ID=Gvermi11816.t1|Name=Gvermi11816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_3404:2162016..2162444+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCCATCAACACGCAACAGGAGCGCCAAGAACTTGAGAAGTTTGT
GGCCAGTCTCGACGAGTATAGCCCTACTCTGCCAGATAACTTGGTCACAC
ACTTCCTCAACCGTGCTGGCTTTCAATCGGAAGACATCCGCGTCCGTCGC
TTAATCGCGCTTGCCACCCAAAAGTTTATTGCAGATGTGGCGAACGAGTC
TATCGCACGCTCTCGAATGCGTCTTGCAGCAGTTCCTGCTCCTAAAAAGG
GACGCGAGTTTATGAAACTCGTGCTTACCATGGAAGACCTGGAGAGCGCA
TTACGCGAGTTCGGTGTCAATGTGAAGAAACCGCCATACTTTGCTGATTC
TACCACGGCTGGTGAAGAGCATGTGGTTGTACCAAAGGCAAATCAGGCAC
AACCAAATACACCGAAGCCCAAGACATGA
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protein sequence of Gvermi11816.t1

>Gvermi11816.t1 ID=Gvermi11816.t1|Name=Gvermi11816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=143bp
MDSINTQQERQELEKFVASLDEYSPTLPDNLVTHFLNRAGFQSEDIRVRR
LIALATQKFIADVANESIARSRMRLAAVPAPKKGREFMKLVLTMEDLESA
LREFGVNVKKPPYFADSTTAGEEHVVVPKANQAQPNTPKPKT*
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mRNA from alignment at ScGOVlb_3404:2162016..2162444+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11816.t1 ID=Gvermi11816.t1|Name=Gvermi11816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_3404:2162016..2162444+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTCCATCAACACGCAACAGGAGCGCCAAGAACTTGAGAAGTTTGT
GGCCAGTCTCGACGAGTATAGCCCTACTCTGCCAGATAACTTGGTCACAC
ACTTCCTCAACCGTGCTGGCTTTCAATCGGAAGACATCCGCGTCCGTCGC
TTAATCGCGCTTGCCACCCAAAAGTTTATTGCAGATGTGGCGAACGAGTC
TATCGCACGCTCTCGAATGCGTCTTGCAGCAGTTCCTGCTCCTAAAAAGG
GACGCGAGTTTATGAAACTCGTGCTTACCATGGAAGACCTGGAGAGCGCA
TTACGCGAGTTCGGTGTCAATGTGAAGAAACCGCCATACTTTGCTGATTC
TACCACGGCTGGTGAAGAGCATGTGGTTGTACCAAAGGCAAATCAGGCAC
AACCAAATACACCGAAGCCCAAGACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2162016..2162444+

>Gvermi11816.t1 ID=Gvermi11816.t1|Name=Gvermi11816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=429bp|location=Sequence derived from alignment at ScGOVlb_3404:2162016..2162444+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTCCATCAACACGCAACAGGAGCGCCAAGAACTTGAGAAGTTTGT
GGCCAGTCTCGACGAGTATAGCCCTACTCTGCCAGATAACTTGGTCACAC
ACTTCCTCAACCGTGCTGGCTTTCAATCGGAAGACATCCGCGTCCGTCGC
TTAATCGCGCTTGCCACCCAAAAGTTTATTGCAGATGTGGCGAACGAGTC
TATCGCACGCTCTCGAATGCGTCTTGCAGCAGTTCCTGCTCCTAAAAAGG
GACGCGAGTTTATGAAACTCGTGCTTACCATGGAAGACCTGGAGAGCGCA
TTACGCGAGTTCGGTGTCAATGTGAAGAAACCGCCATACTTTGCTGATTC
TACCACGGCTGGTGAAGAGCATGTGGTTGTACCAAAGGCAAATCAGGCAC
AACCAAATACACCGAAGCCCAAGACATGA
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