Gvermi11810.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11810.t1
Unique NameGvermi11810.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2140588..2141952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708502.1
Preferred nameHARS
PFAMsHGTP_anticodon,WHEP-TRS,tRNA-synt_His
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01892,ko:K06675
KEGG ReactionR03655
KEGG Pathwayko00970,ko04111,map00970,map04111
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000122,GO:0000166,GO:0002119,GO:0002164,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004821,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048468,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue1.06e-146
EggNOG OGsCOG0124@1|root,KOG1936@2759|Eukaryota
EC6.1.1.21
DescriptionHistidyl-trna synthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11810Gvermi11810Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2140588..2141952 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11810.t1.stop1Gvermi11810.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2140588..2140590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11810.t1.CDS1Gvermi11810.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2140588..2141952 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11810.t1.exon1Gvermi11810.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2140588..2141952 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11810.t1.start1Gvermi11810.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2141950..2141952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11810.t1Gvermi11810.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2140588..2141952 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11810.t1 ID=Gvermi11810.t1|Name=Gvermi11810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=455bp
MAVREDAFTKIKSIFRNHGAVSIDTPVFELRDVLQNKYGEDSKLIYHLSD
DMSSETGEKLSLRYDLSVPFARYIASNNIVSIKRFHIGKVYRRDRPAMER
GRFREFYQCDFDIAGQYPAMVTDAEVLVVMMEMFDALAATSEYHRKLLGS
YCIKVSNRAILDSILRVCGVPDDKLRSICSAIDKLDKMSWSQVRDEMVLE
KELDECVADAIEPYVMLNGEPHQVLSSLRERTELVELCSDALDQMEKLFG
LVAVMRTSMPQRLSFDLSLARGLDYYTGVIFEAVLVEQGINIGSIGAGGR
YDNLVGMFKKNTIPCVGCSLGIERIMNLMLKAAEQQAKAASINGNGTIKA
ACTQVLVASQKGCMKERMQLCSELWRAGIAAEFGYNENWNQGKQIASALK
SFIPLVAFVGEDELVKGEVTLKNLAKEEQRSIPRERIVETIREELRAVRE
QIAE*
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spliced messenger RNA

>Gvermi11810.t1 ID=Gvermi11810.t1|Name=Gvermi11810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_3404:2140588..2141952- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCCGCGAGGACGCGTTCACGAAAATCAAGAGTATCTTCCGCAA
CCATGGTGCAGTGTCCATTGATACGCCCGTCTTTGAATTGCGCGATGTGT
TACAAAACAAATATGGCGAAGATTCAAAGTTGATCTATCACCTTTCGGAC
GATATGTCCAGCGAAACGGGGGAGAAACTTTCTTTGCGCTATGATTTGTC
CGTGCCCTTTGCTCGTTACATAGCATCTAACAACATCGTGAGTATCAAAC
GATTTCACATTGGGAAAGTTTATAGAAGAGATCGGCCTGCCATGGAACGT
GGCAGGTTTCGAGAGTTTTATCAATGTGACTTTGATATTGCCGGCCAGTA
TCCAGCCATGGTAACAGATGCAGAGGTTTTGGTCGTCATGATGGAAATGT
TCGACGCGCTTGCAGCTACCAGTGAGTATCACCGTAAGTTACTCGGCAGT
TATTGTATAAAGGTATCAAATCGCGCTATTCTTGATTCAATATTACGAGT
ATGCGGCGTTCCTGATGACAAGCTGCGTTCCATATGCTCTGCAATCGACA
AGCTGGACAAAATGTCGTGGAGCCAAGTGCGCGATGAAATGGTTTTGGAA
AAGGAGCTTGATGAATGTGTGGCAGATGCAATTGAGCCCTATGTTATGCT
CAATGGAGAACCACACCAAGTGTTGTCCTCTCTACGAGAGCGCACAGAAC
TGGTAGAGTTATGTTCAGATGCTCTTGATCAGATGGAAAAACTCTTCGGC
TTGGTAGCTGTCATGAGGACAAGTATGCCCCAGCGCCTTTCCTTTGATCT
TAGCCTTGCTCGAGGTTTGGACTACTACACGGGTGTCATATTTGAAGCCG
TGCTCGTCGAACAAGGGATAAATATCGGCTCCATCGGTGCTGGCGGTCGA
TACGACAACCTTGTAGGTATGTTCAAGAAGAACACGATTCCATGCGTGGG
ATGCTCCCTCGGCATTGAACGAATAATGAATTTAATGTTGAAGGCCGCTG
AACAACAAGCAAAGGCTGCATCAATTAATGGAAATGGGACAATTAAAGCT
GCATGCACACAGGTTTTAGTGGCATCGCAGAAGGGCTGCATGAAAGAACG
TATGCAGTTATGTTCAGAGCTCTGGCGCGCAGGAATTGCTGCAGAGTTTG
GCTACAATGAAAATTGGAATCAAGGGAAGCAGATCGCAAGTGCGCTCAAG
TCTTTCATTCCTCTCGTAGCGTTCGTGGGTGAAGATGAATTGGTAAAGGG
TGAGGTTACGCTGAAGAACTTGGCAAAAGAAGAACAGCGATCTATTCCCA
GAGAACGCATTGTGGAGACTATTCGAGAAGAACTTCGTGCTGTTAGAGAG
CAAATAGCTGAATAA
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protein sequence of Gvermi11810.t1

>Gvermi11810.t1 ID=Gvermi11810.t1|Name=Gvermi11810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=455bp
MAVREDAFTKIKSIFRNHGAVSIDTPVFELRDVLQNKYGEDSKLIYHLSD
DMSSETGEKLSLRYDLSVPFARYIASNNIVSIKRFHIGKVYRRDRPAMER
GRFREFYQCDFDIAGQYPAMVTDAEVLVVMMEMFDALAATSEYHRKLLGS
YCIKVSNRAILDSILRVCGVPDDKLRSICSAIDKLDKMSWSQVRDEMVLE
KELDECVADAIEPYVMLNGEPHQVLSSLRERTELVELCSDALDQMEKLFG
LVAVMRTSMPQRLSFDLSLARGLDYYTGVIFEAVLVEQGINIGSIGAGGR
YDNLVGMFKKNTIPCVGCSLGIERIMNLMLKAAEQQAKAASINGNGTIKA
ACTQVLVASQKGCMKERMQLCSELWRAGIAAEFGYNENWNQGKQIASALK
SFIPLVAFVGEDELVKGEVTLKNLAKEEQRSIPRERIVETIREELRAVRE
QIAE*
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mRNA from alignment at ScGOVlb_3404:2140588..2141952-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11810.t1 ID=Gvermi11810.t1|Name=Gvermi11810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_3404:2140588..2141952- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGTCCGCGAGGACGCGTTCACGAAAATCAAGAGTATCTTCCGCAA
CCATGGTGCAGTGTCCATTGATACGCCCGTCTTTGAATTGCGCGATGTGT
TACAAAACAAATATGGCGAAGATTCAAAGTTGATCTATCACCTTTCGGAC
GATATGTCCAGCGAAACGGGGGAGAAACTTTCTTTGCGCTATGATTTGTC
CGTGCCCTTTGCTCGTTACATAGCATCTAACAACATCGTGAGTATCAAAC
GATTTCACATTGGGAAAGTTTATAGAAGAGATCGGCCTGCCATGGAACGT
GGCAGGTTTCGAGAGTTTTATCAATGTGACTTTGATATTGCCGGCCAGTA
TCCAGCCATGGTAACAGATGCAGAGGTTTTGGTCGTCATGATGGAAATGT
TCGACGCGCTTGCAGCTACCAGTGAGTATCACCGTAAGTTACTCGGCAGT
TATTGTATAAAGGTATCAAATCGCGCTATTCTTGATTCAATATTACGAGT
ATGCGGCGTTCCTGATGACAAGCTGCGTTCCATATGCTCTGCAATCGACA
AGCTGGACAAAATGTCGTGGAGCCAAGTGCGCGATGAAATGGTTTTGGAA
AAGGAGCTTGATGAATGTGTGGCAGATGCAATTGAGCCCTATGTTATGCT
CAATGGAGAACCACACCAAGTGTTGTCCTCTCTACGAGAGCGCACAGAAC
TGGTAGAGTTATGTTCAGATGCTCTTGATCAGATGGAAAAACTCTTCGGC
TTGGTAGCTGTCATGAGGACAAGTATGCCCCAGCGCCTTTCCTTTGATCT
TAGCCTTGCTCGAGGTTTGGACTACTACACGGGTGTCATATTTGAAGCCG
TGCTCGTCGAACAAGGGATAAATATCGGCTCCATCGGTGCTGGCGGTCGA
TACGACAACCTTGTAGGTATGTTCAAGAAGAACACGATTCCATGCGTGGG
ATGCTCCCTCGGCATTGAACGAATAATGAATTTAATGTTGAAGGCCGCTG
AACAACAAGCAAAGGCTGCATCAATTAATGGAAATGGGACAATTAAAGCT
GCATGCACACAGGTTTTAGTGGCATCGCAGAAGGGCTGCATGAAAGAACG
TATGCAGTTATGTTCAGAGCTCTGGCGCGCAGGAATTGCTGCAGAGTTTG
GCTACAATGAAAATTGGAATCAAGGGAAGCAGATCGCAAGTGCGCTCAAG
TCTTTCATTCCTCTCGTAGCGTTCGTGGGTGAAGATGAATTGGTAAAGGG
TGAGGTTACGCTGAAGAACTTGGCAAAAGAAGAACAGCGATCTATTCCCA
GAGAACGCATTGTGGAGACTATTCGAGAAGAACTTCGTGCTGTTAGAGAG
CAAATAGCTGAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2140588..2141952-

>Gvermi11810.t1 ID=Gvermi11810.t1|Name=Gvermi11810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1365bp|location=Sequence derived from alignment at ScGOVlb_3404:2140588..2141952- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGTCCGCGAGGACGCGTTCACGAAAATCAAGAGTATCTTCCGCAA
CCATGGTGCAGTGTCCATTGATACGCCCGTCTTTGAATTGCGCGATGTGT
TACAAAACAAATATGGCGAAGATTCAAAGTTGATCTATCACCTTTCGGAC
GATATGTCCAGCGAAACGGGGGAGAAACTTTCTTTGCGCTATGATTTGTC
CGTGCCCTTTGCTCGTTACATAGCATCTAACAACATCGTGAGTATCAAAC
GATTTCACATTGGGAAAGTTTATAGAAGAGATCGGCCTGCCATGGAACGT
GGCAGGTTTCGAGAGTTTTATCAATGTGACTTTGATATTGCCGGCCAGTA
TCCAGCCATGGTAACAGATGCAGAGGTTTTGGTCGTCATGATGGAAATGT
TCGACGCGCTTGCAGCTACCAGTGAGTATCACCGTAAGTTACTCGGCAGT
TATTGTATAAAGGTATCAAATCGCGCTATTCTTGATTCAATATTACGAGT
ATGCGGCGTTCCTGATGACAAGCTGCGTTCCATATGCTCTGCAATCGACA
AGCTGGACAAAATGTCGTGGAGCCAAGTGCGCGATGAAATGGTTTTGGAA
AAGGAGCTTGATGAATGTGTGGCAGATGCAATTGAGCCCTATGTTATGCT
CAATGGAGAACCACACCAAGTGTTGTCCTCTCTACGAGAGCGCACAGAAC
TGGTAGAGTTATGTTCAGATGCTCTTGATCAGATGGAAAAACTCTTCGGC
TTGGTAGCTGTCATGAGGACAAGTATGCCCCAGCGCCTTTCCTTTGATCT
TAGCCTTGCTCGAGGTTTGGACTACTACACGGGTGTCATATTTGAAGCCG
TGCTCGTCGAACAAGGGATAAATATCGGCTCCATCGGTGCTGGCGGTCGA
TACGACAACCTTGTAGGTATGTTCAAGAAGAACACGATTCCATGCGTGGG
ATGCTCCCTCGGCATTGAACGAATAATGAATTTAATGTTGAAGGCCGCTG
AACAACAAGCAAAGGCTGCATCAATTAATGGAAATGGGACAATTAAAGCT
GCATGCACACAGGTTTTAGTGGCATCGCAGAAGGGCTGCATGAAAGAACG
TATGCAGTTATGTTCAGAGCTCTGGCGCGCAGGAATTGCTGCAGAGTTTG
GCTACAATGAAAATTGGAATCAAGGGAAGCAGATCGCAAGTGCGCTCAAG
TCTTTCATTCCTCTCGTAGCGTTCGTGGGTGAAGATGAATTGGTAAAGGG
TGAGGTTACGCTGAAGAACTTGGCAAAAGAAGAACAGCGATCTATTCCCA
GAGAACGCATTGTGGAGACTATTCGAGAAGAACTTCGTGCTGTTAGAGAG
CAAATAGCTGAATAA
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