Gvermi11809.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11809.t1
Unique NameGvermi11809.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2137155..2139171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704397.1
PFAMsABC_membrane,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K05662,ko:K05663
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
Evalue1.59e-174
EggNOG OGsCOG5265@1|root,KOG0057@2759|Eukaryota
DescriptionATP-binding cassette subfamily B
COG categoryO
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11809Gvermi11809Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2137155..2139171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11809.t1Gvermi11809.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2137155..2139171 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11809.t1.stop1Gvermi11809.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2137155..2137157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11809.t1.CDS1Gvermi11809.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2137155..2137522 -
Gvermi11809.t1.CDS2Gvermi11809.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2137604..2137843 -
Gvermi11809.t1.CDS3Gvermi11809.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2137935..2137953 -
Gvermi11809.t1.CDS4Gvermi11809.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2138065..2139171 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11809.t1.exon1Gvermi11809.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2137155..2137522 -
Gvermi11809.t1.exon2Gvermi11809.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2137604..2137843 -
Gvermi11809.t1.exon3Gvermi11809.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2137935..2137953 -
Gvermi11809.t1.exon4Gvermi11809.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2138065..2139171 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11809.t1.intron1Gvermi11809.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2137523..2137603 -
Gvermi11809.t1.intron2Gvermi11809.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2137844..2137934 -
Gvermi11809.t1.intron3Gvermi11809.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2137954..2138064 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11809.t1.start1Gvermi11809.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2139169..2139171 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11809.t1 ID=Gvermi11809.t1|Name=Gvermi11809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=578bp
MRTCVFSKAGQRVGRSITASSFAHIHSLEMTFHNGAQTGAVTRVIDRGTR
SVLTIFRGLIFAFMPSLFELLLVCGVLITRFSVWYVAVLLVTFAVFILWT
LSVNDKLGKVRREMNTVENDASAKLTDSLLNVEAVKAFNNADFELRRYDQ
VLTQYEKLAVTNDWYYAALNIGQGAIYTVGLTLILIRAAQGVVAGTITVG
SVVMLATMVQQLWVPLNFLGWQYREVKQSLIDMQNLFDLLKREPRVAEAP
NATNIHINGGEIIFDNVTFLYPEADESLVFTKKPSEMTQKNGNEPSNNPR
RLALDRVSFRVPPGKSLALVGSSGSGKSTVTRLLTRLYDVTSGRILIDGQ
DISTGTMESLRNIISIVPQDTALFNDTIAYNIRYGRPSATDEEVVAAAKA
ASIHEVIIRTPQGYETIVGERGVRFSGGERQRLSVARAFLKGSQVIIEDE
STSALDTMTEMEVSSALQKLGVNRTRIIVAHRLSTIMNADHIVVLREGKK
VEEGSFAYLVQKEHGVFRDMWERQQKKKDEDGILDDDDELHEGHEVLYQR
NGSFYNGEKGRREHGGDLLHGELPPRG*
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spliced messenger RNA

>Gvermi11809.t1 ID=Gvermi11809.t1|Name=Gvermi11809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:2137155..2139171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTACTTGCGTGTTTTCCAAGGCGGGTCAGCGTGTGGGCCGGAGTAT
CACGGCTTCATCTTTTGCTCACATTCATTCTCTTGAAATGACGTTCCATA
ACGGCGCCCAAACTGGTGCAGTGACGCGTGTTATCGACAGGGGCACGAGA
AGTGTGCTCACGATTTTTCGAGGTCTCATATTCGCTTTCATGCCCAGCCT
GTTTGAACTACTGCTGGTCTGCGGCGTTCTTATCACGCGATTTTCCGTAT
GGTACGTCGCTGTTCTTCTAGTTACGTTTGCTGTTTTTATATTGTGGACG
TTGTCTGTCAATGATAAGCTGGGTAAAGTGAGAAGAGAGATGAATACTGT
GGAAAATGACGCTTCAGCAAAACTCACGGACTCCCTTCTAAATGTGGAGG
CCGTCAAGGCATTCAACAATGCCGATTTTGAGTTACGTCGGTACGATCAG
GTGCTGACGCAGTACGAGAAACTTGCAGTAACCAATGATTGGTATTACGC
TGCGTTGAATATTGGACAAGGCGCCATATATACTGTTGGTCTTACCCTCA
TTCTTATTCGAGCAGCCCAGGGTGTCGTGGCAGGGACAATCACAGTTGGG
TCTGTAGTTATGCTAGCAACTATGGTTCAACAACTGTGGGTTCCGTTGAA
CTTCCTAGGATGGCAATACCGAGAAGTGAAACAAAGTCTAATCGATATGC
AAAATCTGTTCGATTTGCTGAAACGAGAACCACGCGTAGCCGAGGCGCCC
AACGCGACCAATATTCACATCAATGGCGGGGAAATCATCTTTGACAATGT
CACATTTTTGTATCCAGAGGCAGATGAATCTCTAGTGTTTACCAAGAAAC
CCTCGGAAATGACCCAAAAAAATGGGAACGAACCATCGAACAATCCTAGA
AGACTCGCATTGGATCGTGTCAGTTTTCGAGTTCCACCGGGAAAGAGCTT
AGCTTTAGTAGGGTCGAGCGGATCTGGCAAAAGCACTGTAACCAGACTTT
TGACTCGACTGTACGATGTTACGAGTGGTCGGATTTTGATCGATGGTCAA
GATATATCTACAGGAACAATGGAGTCTCTGCGAAATATTATAAGCATCGT
TCCACAGGACACGGCACTCTTTAACGATACAATTGCGTATAACATTCGAT
ATGGGCGACCTTCGGCAACCGACGAAGAAGTTGTTGCCGCCGCTAAGGCA
GCATCAATTCACGAGGTTATTATAAGGACACCGCAAGGTTATGAGACTAT
AGTCGGCGAGCGGGGCGTGCGCTTTTCTGGAGGTGAAAGACAAAGACTTT
CTGTAGCAAGAGCTTTTCTAAAAGGCAGCCAGGTCATTATTGAGGATGAA
AGCACCAGCGCTTTAGATACCATGACGGAAATGGAGGTTTCAAGTGCACT
CCAGAAGCTTGGAGTGAACAGAACGCGAATCATAGTAGCACATCGTCTGA
GCACCATCATGAATGCAGATCATATTGTGGTTTTACGAGAAGGAAAGAAA
GTTGAGGAAGGCAGTTTTGCATATTTAGTTCAAAAAGAACATGGCGTTTT
CCGGGACATGTGGGAAAGACAGCAGAAGAAGAAGGATGAAGACGGAATAC
TTGACGATGATGATGAACTCCACGAGGGACACGAGGTGCTGTACCAAAGA
AACGGATCTTTCTATAATGGAGAAAAGGGGCGGCGCGAACATGGAGGAGA
TCTACTCCATGGCGAATTGCCTCCGAGAGGATGA
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protein sequence of Gvermi11809.t1

>Gvermi11809.t1 ID=Gvermi11809.t1|Name=Gvermi11809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=578bp
MRTCVFSKAGQRVGRSITASSFAHIHSLEMTFHNGAQTGAVTRVIDRGTR
SVLTIFRGLIFAFMPSLFELLLVCGVLITRFSVWYVAVLLVTFAVFILWT
LSVNDKLGKVRREMNTVENDASAKLTDSLLNVEAVKAFNNADFELRRYDQ
VLTQYEKLAVTNDWYYAALNIGQGAIYTVGLTLILIRAAQGVVAGTITVG
SVVMLATMVQQLWVPLNFLGWQYREVKQSLIDMQNLFDLLKREPRVAEAP
NATNIHINGGEIIFDNVTFLYPEADESLVFTKKPSEMTQKNGNEPSNNPR
RLALDRVSFRVPPGKSLALVGSSGSGKSTVTRLLTRLYDVTSGRILIDGQ
DISTGTMESLRNIISIVPQDTALFNDTIAYNIRYGRPSATDEEVVAAAKA
ASIHEVIIRTPQGYETIVGERGVRFSGGERQRLSVARAFLKGSQVIIEDE
STSALDTMTEMEVSSALQKLGVNRTRIIVAHRLSTIMNADHIVVLREGKK
VEEGSFAYLVQKEHGVFRDMWERQQKKKDEDGILDDDDELHEGHEVLYQR
NGSFYNGEKGRREHGGDLLHGELPPRG*
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mRNA from alignment at ScGOVlb_3404:2137155..2139171-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11809.t1 ID=Gvermi11809.t1|Name=Gvermi11809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2017bp|location=Sequence derived from alignment at ScGOVlb_3404:2137155..2139171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTACTTGCGTGTTTTCCAAGGCGGGTCAGCGTGTGGGCCGGAGTAT
CACGGCTTCATCTTTTGCTCACATTCATTCTCTTGAAATGACGTTCCATA
ACGGCGCCCAAACTGGTGCAGTGACGCGTGTTATCGACAGGGGCACGAGA
AGTGTGCTCACGATTTTTCGAGGTCTCATATTCGCTTTCATGCCCAGCCT
GTTTGAACTACTGCTGGTCTGCGGCGTTCTTATCACGCGATTTTCCGTAT
GGTACGTCGCTGTTCTTCTAGTTACGTTTGCTGTTTTTATATTGTGGACG
TTGTCTGTCAATGATAAGCTGGGTAAAGTGAGAAGAGAGATGAATACTGT
GGAAAATGACGCTTCAGCAAAACTCACGGACTCCCTTCTAAATGTGGAGG
CCGTCAAGGCATTCAACAATGCCGATTTTGAGTTACGTCGGTACGATCAG
GTGCTGACGCAGTACGAGAAACTTGCAGTAACCAATGATTGGTATTACGC
TGCGTTGAATATTGGACAAGGCGCCATATATACTGTTGGTCTTACCCTCA
TTCTTATTCGAGCAGCCCAGGGTGTCGTGGCAGGGACAATCACAGTTGGG
TCTGTAGTTATGCTAGCAACTATGGTTCAACAACTGTGGGTTCCGTTGAA
CTTCCTAGGATGGCAATACCGAGAAGTGAAACAAAGTCTAATCGATATGC
AAAATCTGTTCGATTTGCTGAAACGAGAACCACGCGTAGCCGAGGCGCCC
AACGCGACCAATATTCACATCAATGGCGGGGAAATCATCTTTGACAATGT
CACATTTTTGTATCCAGAGGCAGATGAATCTCTAGTGTTTACCAAGAAAC
CCTCGGAAATGACCCAAAAAAATGGGAACGAACCATCGAACAATCCTAGA
AGACTCGCATTGGATCGTGTCAGTTTTCGAGTTCCACCGGGAAAGAGCTT
AGCTTTAGTAGGGTCGAGCGGATCTGGCAAAAGCACTGTAACCAGACTTT
TGACTCGACTGTACGATGTTACGAGTGGTCGGATTTTGATCGATGGTCAA
GATATATCTACAGGAACAATGGAGTCTCTGCGAAATATTATAAGCATCGT
TCCACAGGTATGTTGAACTCTTGGCTGAGGATCAAGAATTGCACATATCC
CGACGGTTATGCCCAAGTTTCTAGATTCACTAACATTTTGAATGATAATT
GTGAACTACACTACCCAGGACACGGCACTCTTTAACGGTAAGTTCTTCAT
CGTATCGAGTCAGCAGAATTTCCGCCGTGAAGCAAAGCTCAAAAACTAAT
TGATGAATGTTTCTTATCCTTTTGACAGATACAATTGCGTATAACATTCG
ATATGGGCGACCTTCGGCAACCGACGAAGAAGTTGTTGCCGCCGCTAAGG
CAGCATCAATTCACGAGGTTATTATAAGGACACCGCAAGGTTATGAGACT
ATAGTCGGCGAGCGGGGCGTGCGCTTTTCTGGAGGTGAAAGACAAAGACT
TTCTGTAGCAAGAGCTTTTCTAAAAGGCAGCCAGGTCATTATTGAGGATG
AAAGCACCAGCGCTTTAGGTAAGTTCGACGCGAGTTCATTCCAATTAGCC
ACATACAGTTCTAACCACTATAATGCGCACGACTGAAAATATACTTCAGA
TACCATGACGGAAATGGAGGTTTCAAGTGCACTCCAGAAGCTTGGAGTGA
ACAGAACGCGAATCATAGTAGCACATCGTCTGAGCACCATCATGAATGCA
GATCATATTGTGGTTTTACGAGAAGGAAAGAAAGTTGAGGAAGGCAGTTT
TGCATATTTAGTTCAAAAAGAACATGGCGTTTTCCGGGACATGTGGGAAA
GACAGCAGAAGAAGAAGGATGAAGACGGAATACTTGACGATGATGATGAA
CTCCACGAGGGACACGAGGTGCTGTACCAAAGAAACGGATCTTTCTATAA
TGGAGAAAAGGGGCGGCGCGAACATGGAGGAGATCTACTCCATGGCGAAT
TGCCTCCGAGAGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2137155..2139171-

>Gvermi11809.t1 ID=Gvermi11809.t1|Name=Gvermi11809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:2137155..2139171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTACTTGCGTGTTTTCCAAGGCGGGTCAGCGTGTGGGCCGGAGTAT
CACGGCTTCATCTTTTGCTCACATTCATTCTCTTGAAATGACGTTCCATA
ACGGCGCCCAAACTGGTGCAGTGACGCGTGTTATCGACAGGGGCACGAGA
AGTGTGCTCACGATTTTTCGAGGTCTCATATTCGCTTTCATGCCCAGCCT
GTTTGAACTACTGCTGGTCTGCGGCGTTCTTATCACGCGATTTTCCGTAT
GGTACGTCGCTGTTCTTCTAGTTACGTTTGCTGTTTTTATATTGTGGACG
TTGTCTGTCAATGATAAGCTGGGTAAAGTGAGAAGAGAGATGAATACTGT
GGAAAATGACGCTTCAGCAAAACTCACGGACTCCCTTCTAAATGTGGAGG
CCGTCAAGGCATTCAACAATGCCGATTTTGAGTTACGTCGGTACGATCAG
GTGCTGACGCAGTACGAGAAACTTGCAGTAACCAATGATTGGTATTACGC
TGCGTTGAATATTGGACAAGGCGCCATATATACTGTTGGTCTTACCCTCA
TTCTTATTCGAGCAGCCCAGGGTGTCGTGGCAGGGACAATCACAGTTGGG
TCTGTAGTTATGCTAGCAACTATGGTTCAACAACTGTGGGTTCCGTTGAA
CTTCCTAGGATGGCAATACCGAGAAGTGAAACAAAGTCTAATCGATATGC
AAAATCTGTTCGATTTGCTGAAACGAGAACCACGCGTAGCCGAGGCGCCC
AACGCGACCAATATTCACATCAATGGCGGGGAAATCATCTTTGACAATGT
CACATTTTTGTATCCAGAGGCAGATGAATCTCTAGTGTTTACCAAGAAAC
CCTCGGAAATGACCCAAAAAAATGGGAACGAACCATCGAACAATCCTAGA
AGACTCGCATTGGATCGTGTCAGTTTTCGAGTTCCACCGGGAAAGAGCTT
AGCTTTAGTAGGGTCGAGCGGATCTGGCAAAAGCACTGTAACCAGACTTT
TGACTCGACTGTACGATGTTACGAGTGGTCGGATTTTGATCGATGGTCAA
GATATATCTACAGGAACAATGGAGTCTCTGCGAAATATTATAAGCATCGT
TCCACAGGACACGGCACTCTTTAACGATACAATTGCGTATAACATTCGAT
ATGGGCGACCTTCGGCAACCGACGAAGAAGTTGTTGCCGCCGCTAAGGCA
GCATCAATTCACGAGGTTATTATAAGGACACCGCAAGGTTATGAGACTAT
AGTCGGCGAGCGGGGCGTGCGCTTTTCTGGAGGTGAAAGACAAAGACTTT
CTGTAGCAAGAGCTTTTCTAAAAGGCAGCCAGGTCATTATTGAGGATGAA
AGCACCAGCGCTTTAGATACCATGACGGAAATGGAGGTTTCAAGTGCACT
CCAGAAGCTTGGAGTGAACAGAACGCGAATCATAGTAGCACATCGTCTGA
GCACCATCATGAATGCAGATCATATTGTGGTTTTACGAGAAGGAAAGAAA
GTTGAGGAAGGCAGTTTTGCATATTTAGTTCAAAAAGAACATGGCGTTTT
CCGGGACATGTGGGAAAGACAGCAGAAGAAGAAGGATGAAGACGGAATAC
TTGACGATGATGATGAACTCCACGAGGGACACGAGGTGCTGTACCAAAGA
AACGGATCTTTCTATAATGGAGAAAAGGGGCGGCGCGAACATGGAGGAGA
TCTACTCCATGGCGAATTGCCTCCGAGAGGATGA
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