Gvermi11806.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11806.t1
Unique NameGvermi11806.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2129067..2129708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO077CT
PFAMsDUF1995
Max annot lvl2759|Eukaryota
Evalue2.86e-21
EggNOG OGs28J60@1|root,2QRI3@2759|Eukaryota
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11806Gvermi11806Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2129067..2129708 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11806.t1.stop1Gvermi11806.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2129067..2129069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11806.t1.CDS1Gvermi11806.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2129067..2129708 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11806.t1.exon1Gvermi11806.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2129067..2129708 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11806.t1.start1Gvermi11806.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2129706..2129708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11806.t1Gvermi11806.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2129067..2129708 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11806.t1 ID=Gvermi11806.t1|Name=Gvermi11806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=214bp
MRVTVQLDPTAGDETYTLLKRSVPIAQQVCEAMRREGEGDVLMLLPDAGA
AALARRDMGDAAGLRLEGMDEGTVDDAAAAVAVVAPRASEVEALRQVAER
ALEAGVPLLVLNADLVDMGVTGLSLNARRLRKQLLDSFEAGFVLRLVGGG
VLLREWPGAWELWEEHGDGYRWKTRFDAAPSTEQMDEALFGDGGGGRSVL
DRVRSFLAVYMRG*
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spliced messenger RNA

>Gvermi11806.t1 ID=Gvermi11806.t1|Name=Gvermi11806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_3404:2129067..2129708- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGACGGTGCAGCTGGACCCGACGGCGGGCGACGAGACGTATAC
GCTGCTCAAGCGGTCGGTGCCAATCGCGCAGCAGGTGTGCGAGGCGATGC
GGCGAGAAGGTGAGGGCGACGTGCTGATGCTGCTGCCGGACGCGGGGGCG
GCGGCGCTGGCGCGCAGAGACATGGGCGACGCGGCCGGGCTGCGGCTGGA
GGGCATGGACGAGGGCACGGTGGACGACGCGGCCGCGGCCGTGGCCGTGG
TGGCGCCGCGCGCCAGCGAGGTGGAGGCGCTGCGGCAGGTGGCGGAGCGC
GCGCTGGAGGCCGGCGTGCCGCTGCTGGTGCTCAACGCGGACCTGGTGGA
CATGGGCGTGACGGGGTTGTCGCTCAACGCGCGGCGGCTTCGCAAGCAGC
TGCTGGACTCGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGGGCGGCGGC
GTGCTGCTTCGCGAGTGGCCGGGCGCGTGGGAGCTGTGGGAGGAGCACGG
CGACGGCTACCGGTGGAAGACGCGCTTCGACGCGGCGCCAAGCACCGAGC
AGATGGACGAAGCGCTGTTCGGCGACGGCGGCGGCGGGCGTAGCGTGCTG
GATCGCGTGCGCAGCTTCCTTGCCGTGTACATGCGCGGCTAA
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protein sequence of Gvermi11806.t1

>Gvermi11806.t1 ID=Gvermi11806.t1|Name=Gvermi11806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MRVTVQLDPTAGDETYTLLKRSVPIAQQVCEAMRREGEGDVLMLLPDAGA
AALARRDMGDAAGLRLEGMDEGTVDDAAAAVAVVAPRASEVEALRQVAER
ALEAGVPLLVLNADLVDMGVTGLSLNARRLRKQLLDSFEAGFVLRLVGGG
VLLREWPGAWELWEEHGDGYRWKTRFDAAPSTEQMDEALFGDGGGGRSVL
DRVRSFLAVYMRG*
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mRNA from alignment at ScGOVlb_3404:2129067..2129708-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11806.t1 ID=Gvermi11806.t1|Name=Gvermi11806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_3404:2129067..2129708- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTGACGGTGCAGCTGGACCCGACGGCGGGCGACGAGACGTATAC
GCTGCTCAAGCGGTCGGTGCCAATCGCGCAGCAGGTGTGCGAGGCGATGC
GGCGAGAAGGTGAGGGCGACGTGCTGATGCTGCTGCCGGACGCGGGGGCG
GCGGCGCTGGCGCGCAGAGACATGGGCGACGCGGCCGGGCTGCGGCTGGA
GGGCATGGACGAGGGCACGGTGGACGACGCGGCCGCGGCCGTGGCCGTGG
TGGCGCCGCGCGCCAGCGAGGTGGAGGCGCTGCGGCAGGTGGCGGAGCGC
GCGCTGGAGGCCGGCGTGCCGCTGCTGGTGCTCAACGCGGACCTGGTGGA
CATGGGCGTGACGGGGTTGTCGCTCAACGCGCGGCGGCTTCGCAAGCAGC
TGCTGGACTCGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGGGCGGCGGC
GTGCTGCTTCGCGAGTGGCCGGGCGCGTGGGAGCTGTGGGAGGAGCACGG
CGACGGCTACCGGTGGAAGACGCGCTTCGACGCGGCGCCAAGCACCGAGC
AGATGGACGAAGCGCTGTTCGGCGACGGCGGCGGCGGGCGTAGCGTGCTG
GATCGCGTGCGCAGCTTCCTTGCCGTGTACATGCGCGGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2129067..2129708-

>Gvermi11806.t1 ID=Gvermi11806.t1|Name=Gvermi11806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=642bp|location=Sequence derived from alignment at ScGOVlb_3404:2129067..2129708- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTGACGGTGCAGCTGGACCCGACGGCGGGCGACGAGACGTATAC
GCTGCTCAAGCGGTCGGTGCCAATCGCGCAGCAGGTGTGCGAGGCGATGC
GGCGAGAAGGTGAGGGCGACGTGCTGATGCTGCTGCCGGACGCGGGGGCG
GCGGCGCTGGCGCGCAGAGACATGGGCGACGCGGCCGGGCTGCGGCTGGA
GGGCATGGACGAGGGCACGGTGGACGACGCGGCCGCGGCCGTGGCCGTGG
TGGCGCCGCGCGCCAGCGAGGTGGAGGCGCTGCGGCAGGTGGCGGAGCGC
GCGCTGGAGGCCGGCGTGCCGCTGCTGGTGCTCAACGCGGACCTGGTGGA
CATGGGCGTGACGGGGTTGTCGCTCAACGCGCGGCGGCTTCGCAAGCAGC
TGCTGGACTCGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGGGCGGCGGC
GTGCTGCTTCGCGAGTGGCCGGGCGCGTGGGAGCTGTGGGAGGAGCACGG
CGACGGCTACCGGTGGAAGACGCGCTTCGACGCGGCGCCAAGCACCGAGC
AGATGGACGAAGCGCTGTTCGGCGACGGCGGCGGCGGGCGTAGCGTGCTG
GATCGCGTGCGCAGCTTCCTTGCCGTGTACATGCGCGGCTAA
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