Gvermi11805.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11805.t1
Unique NameGvermi11805.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2126698..2128146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABP00687
PFAMsAmmonium_transp
Max annot lvl3041|Chlorophyta
KEGG koko:K03320
KEGG TC1.A.11
Evalue1.46e-143
EggNOG OGsCOG0004@1|root,KOG0682@2759|Eukaryota,37HQP@33090|Viridiplantae,34J8I@3041|Chlorophyta
DescriptionAmmonium transporter
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11805Gvermi11805Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2126698..2128146 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11805.t1.stop1Gvermi11805.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2126698..2126700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11805.t1.CDS1Gvermi11805.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2126698..2128146 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11805.t1.exon1Gvermi11805.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2126698..2128146 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11805.t1.start1Gvermi11805.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2128144..2128146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11805.t1Gvermi11805.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2126698..2128146 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11805.t1 ID=Gvermi11805.t1|Name=Gvermi11805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp
MQVADYYFQANGQMHLNSSKVVTDLVSLFVTVEDHAGAIDNMFVLFSGYL
VFLMQCGFAMLTAGSVRTKNTKNVLLKNVLDACVGALAYYLFGWAFAYGP
DSRAPGFIGSGNYALSSSSAEGTFSDFTSFFFQWAFAATAATIVSGSVAE
RTSFYAYMGYAFFLTSFVYPVVSHWVWGGGFLSTIFDQGMIDFAGCSVVH
MVGGFAGLAGAIIVGPRYGRFNSDGKPMPLPGHSATLATLGTFLLWFGWY
GFNPGSALGITGGLFNTVQRCAVTTTIAGAVGGLTTLILKKVLDHFFDLL
SVLNGILAGLVAITASCAFVDVWAAVIIGAIGAVVYVVAATLLLKFKIDD
PLEAFPIHGASGFWGCLAAGFFNRKSAQEVAGFTNPYAGVIEGDGKLLLA
NFVGCLIIIAWVLVLLVPFFLVLKVAGILRISREEELIGNDISKHGGVAY
PDDAVDVAADAARQDMDSLAMDPGAPTEVDKV*
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spliced messenger RNA

>Gvermi11805.t1 ID=Gvermi11805.t1|Name=Gvermi11805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_3404:2126698..2128146- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTCGCTGATTACTACTTCCAGGCCAATGGCCAAATGCACCTTAA
TTCCTCCAAAGTCGTCACCGACCTTGTGTCTCTGTTCGTCACTGTTGAGG
ACCATGCCGGTGCCATTGACAACATGTTTGTCCTGTTCTCCGGCTATCTC
GTCTTCCTCATGCAATGTGGTTTCGCCATGCTCACAGCCGGTTCCGTCCG
TACCAAGAACACCAAGAACGTGCTTCTAAAGAACGTCTTGGATGCTTGCG
TCGGCGCCCTCGCTTACTATTTGTTCGGCTGGGCTTTTGCTTACGGTCCC
GATAGCCGCGCACCGGGTTTCATTGGCTCTGGCAATTACGCTCTCTCCAG
CTCCTCGGCGGAAGGAACCTTTTCTGATTTCACCAGCTTCTTCTTTCAAT
GGGCTTTCGCGGCTACCGCCGCCACCATTGTGTCTGGTTCCGTCGCTGAA
CGTACTTCCTTCTATGCCTACATGGGCTACGCCTTCTTCCTCACTTCCTT
TGTGTACCCGGTTGTGTCCCATTGGGTCTGGGGAGGTGGCTTCCTCTCCA
CCATCTTTGACCAGGGCATGATTGACTTTGCCGGCTGCTCGGTTGTTCAC
ATGGTTGGTGGCTTCGCCGGCTTGGCCGGCGCCATCATCGTCGGTCCGCG
TTACGGACGTTTCAACTCCGACGGTAAGCCCATGCCCTTGCCGGGTCACT
CTGCCACTCTTGCCACCCTCGGCACTTTTCTGCTCTGGTTCGGATGGTAC
GGTTTCAACCCGGGCTCCGCTCTCGGCATCACCGGTGGCCTCTTCAACAC
TGTTCAGCGCTGTGCCGTCACTACCACCATTGCTGGTGCCGTGGGAGGTC
TCACCACGCTCATTTTGAAGAAGGTTTTGGATCACTTCTTTGACCTTCTC
TCTGTTCTCAACGGTATTCTCGCCGGTCTGGTTGCCATCACTGCTTCCTG
CGCTTTTGTGGACGTTTGGGCCGCTGTTATCATTGGCGCCATTGGTGCCG
TTGTATACGTCGTTGCTGCCACGCTCCTTCTCAAGTTCAAGATCGATGAC
CCTCTCGAAGCCTTCCCCATTCACGGTGCTTCTGGGTTTTGGGGCTGCCT
TGCAGCTGGCTTTTTCAACCGCAAGAGCGCTCAGGAGGTTGCCGGTTTCA
CTAACCCGTATGCCGGCGTCATCGAGGGCGACGGAAAGCTGCTGCTTGCC
AACTTTGTCGGCTGCCTGATCATCATCGCCTGGGTTCTCGTACTTTTGGT
GCCCTTCTTCCTTGTTCTGAAGGTGGCAGGTATTCTTCGTATTTCCCGAG
AAGAGGAGCTGATCGGAAATGATATCTCCAAGCACGGTGGTGTGGCCTAC
CCCGATGACGCCGTGGACGTGGCCGCTGATGCCGCCAGACAGGACATGGA
CTCGCTGGCCATGGACCCGGGAGCTCCGACAGAAGTTGACAAGGTTTAA
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protein sequence of Gvermi11805.t1

>Gvermi11805.t1 ID=Gvermi11805.t1|Name=Gvermi11805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=483bp
MQVADYYFQANGQMHLNSSKVVTDLVSLFVTVEDHAGAIDNMFVLFSGYL
VFLMQCGFAMLTAGSVRTKNTKNVLLKNVLDACVGALAYYLFGWAFAYGP
DSRAPGFIGSGNYALSSSSAEGTFSDFTSFFFQWAFAATAATIVSGSVAE
RTSFYAYMGYAFFLTSFVYPVVSHWVWGGGFLSTIFDQGMIDFAGCSVVH
MVGGFAGLAGAIIVGPRYGRFNSDGKPMPLPGHSATLATLGTFLLWFGWY
GFNPGSALGITGGLFNTVQRCAVTTTIAGAVGGLTTLILKKVLDHFFDLL
SVLNGILAGLVAITASCAFVDVWAAVIIGAIGAVVYVVAATLLLKFKIDD
PLEAFPIHGASGFWGCLAAGFFNRKSAQEVAGFTNPYAGVIEGDGKLLLA
NFVGCLIIIAWVLVLLVPFFLVLKVAGILRISREEELIGNDISKHGGVAY
PDDAVDVAADAARQDMDSLAMDPGAPTEVDKV*
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mRNA from alignment at ScGOVlb_3404:2126698..2128146-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11805.t1 ID=Gvermi11805.t1|Name=Gvermi11805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_3404:2126698..2128146- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGTCGCTGATTACTACTTCCAGGCCAATGGCCAAATGCACCTTAA
TTCCTCCAAAGTCGTCACCGACCTTGTGTCTCTGTTCGTCACTGTTGAGG
ACCATGCCGGTGCCATTGACAACATGTTTGTCCTGTTCTCCGGCTATCTC
GTCTTCCTCATGCAATGTGGTTTCGCCATGCTCACAGCCGGTTCCGTCCG
TACCAAGAACACCAAGAACGTGCTTCTAAAGAACGTCTTGGATGCTTGCG
TCGGCGCCCTCGCTTACTATTTGTTCGGCTGGGCTTTTGCTTACGGTCCC
GATAGCCGCGCACCGGGTTTCATTGGCTCTGGCAATTACGCTCTCTCCAG
CTCCTCGGCGGAAGGAACCTTTTCTGATTTCACCAGCTTCTTCTTTCAAT
GGGCTTTCGCGGCTACCGCCGCCACCATTGTGTCTGGTTCCGTCGCTGAA
CGTACTTCCTTCTATGCCTACATGGGCTACGCCTTCTTCCTCACTTCCTT
TGTGTACCCGGTTGTGTCCCATTGGGTCTGGGGAGGTGGCTTCCTCTCCA
CCATCTTTGACCAGGGCATGATTGACTTTGCCGGCTGCTCGGTTGTTCAC
ATGGTTGGTGGCTTCGCCGGCTTGGCCGGCGCCATCATCGTCGGTCCGCG
TTACGGACGTTTCAACTCCGACGGTAAGCCCATGCCCTTGCCGGGTCACT
CTGCCACTCTTGCCACCCTCGGCACTTTTCTGCTCTGGTTCGGATGGTAC
GGTTTCAACCCGGGCTCCGCTCTCGGCATCACCGGTGGCCTCTTCAACAC
TGTTCAGCGCTGTGCCGTCACTACCACCATTGCTGGTGCCGTGGGAGGTC
TCACCACGCTCATTTTGAAGAAGGTTTTGGATCACTTCTTTGACCTTCTC
TCTGTTCTCAACGGTATTCTCGCCGGTCTGGTTGCCATCACTGCTTCCTG
CGCTTTTGTGGACGTTTGGGCCGCTGTTATCATTGGCGCCATTGGTGCCG
TTGTATACGTCGTTGCTGCCACGCTCCTTCTCAAGTTCAAGATCGATGAC
CCTCTCGAAGCCTTCCCCATTCACGGTGCTTCTGGGTTTTGGGGCTGCCT
TGCAGCTGGCTTTTTCAACCGCAAGAGCGCTCAGGAGGTTGCCGGTTTCA
CTAACCCGTATGCCGGCGTCATCGAGGGCGACGGAAAGCTGCTGCTTGCC
AACTTTGTCGGCTGCCTGATCATCATCGCCTGGGTTCTCGTACTTTTGGT
GCCCTTCTTCCTTGTTCTGAAGGTGGCAGGTATTCTTCGTATTTCCCGAG
AAGAGGAGCTGATCGGAAATGATATCTCCAAGCACGGTGGTGTGGCCTAC
CCCGATGACGCCGTGGACGTGGCCGCTGATGCCGCCAGACAGGACATGGA
CTCGCTGGCCATGGACCCGGGAGCTCCGACAGAAGTTGACAAGGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2126698..2128146-

>Gvermi11805.t1 ID=Gvermi11805.t1|Name=Gvermi11805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1449bp|location=Sequence derived from alignment at ScGOVlb_3404:2126698..2128146- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGTCGCTGATTACTACTTCCAGGCCAATGGCCAAATGCACCTTAA
TTCCTCCAAAGTCGTCACCGACCTTGTGTCTCTGTTCGTCACTGTTGAGG
ACCATGCCGGTGCCATTGACAACATGTTTGTCCTGTTCTCCGGCTATCTC
GTCTTCCTCATGCAATGTGGTTTCGCCATGCTCACAGCCGGTTCCGTCCG
TACCAAGAACACCAAGAACGTGCTTCTAAAGAACGTCTTGGATGCTTGCG
TCGGCGCCCTCGCTTACTATTTGTTCGGCTGGGCTTTTGCTTACGGTCCC
GATAGCCGCGCACCGGGTTTCATTGGCTCTGGCAATTACGCTCTCTCCAG
CTCCTCGGCGGAAGGAACCTTTTCTGATTTCACCAGCTTCTTCTTTCAAT
GGGCTTTCGCGGCTACCGCCGCCACCATTGTGTCTGGTTCCGTCGCTGAA
CGTACTTCCTTCTATGCCTACATGGGCTACGCCTTCTTCCTCACTTCCTT
TGTGTACCCGGTTGTGTCCCATTGGGTCTGGGGAGGTGGCTTCCTCTCCA
CCATCTTTGACCAGGGCATGATTGACTTTGCCGGCTGCTCGGTTGTTCAC
ATGGTTGGTGGCTTCGCCGGCTTGGCCGGCGCCATCATCGTCGGTCCGCG
TTACGGACGTTTCAACTCCGACGGTAAGCCCATGCCCTTGCCGGGTCACT
CTGCCACTCTTGCCACCCTCGGCACTTTTCTGCTCTGGTTCGGATGGTAC
GGTTTCAACCCGGGCTCCGCTCTCGGCATCACCGGTGGCCTCTTCAACAC
TGTTCAGCGCTGTGCCGTCACTACCACCATTGCTGGTGCCGTGGGAGGTC
TCACCACGCTCATTTTGAAGAAGGTTTTGGATCACTTCTTTGACCTTCTC
TCTGTTCTCAACGGTATTCTCGCCGGTCTGGTTGCCATCACTGCTTCCTG
CGCTTTTGTGGACGTTTGGGCCGCTGTTATCATTGGCGCCATTGGTGCCG
TTGTATACGTCGTTGCTGCCACGCTCCTTCTCAAGTTCAAGATCGATGAC
CCTCTCGAAGCCTTCCCCATTCACGGTGCTTCTGGGTTTTGGGGCTGCCT
TGCAGCTGGCTTTTTCAACCGCAAGAGCGCTCAGGAGGTTGCCGGTTTCA
CTAACCCGTATGCCGGCGTCATCGAGGGCGACGGAAAGCTGCTGCTTGCC
AACTTTGTCGGCTGCCTGATCATCATCGCCTGGGTTCTCGTACTTTTGGT
GCCCTTCTTCCTTGTTCTGAAGGTGGCAGGTATTCTTCGTATTTCCCGAG
AAGAGGAGCTGATCGGAAATGATATCTCCAAGCACGGTGGTGTGGCCTAC
CCCGATGACGCCGTGGACGTGGCCGCTGATGCCGCCAGACAGGACATGGA
CTCGCTGGCCATGGACCCGGGAGCTCCGACAGAAGTTGACAAGGTTTAA
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