Gvermi11797.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11797.t1
Unique NameGvermi11797.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length571
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2108150..2109862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11797Gvermi11797Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2108150..2109862 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11797.t1.start1Gvermi11797.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2108150..2108152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11797.t1.CDS1Gvermi11797.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2108150..2109862 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11797.t1.exon1Gvermi11797.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2108150..2109862 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11797.t1.stop1Gvermi11797.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2109860..2109862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11797.t1Gvermi11797.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2108150..2109862 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11797.t1 ID=Gvermi11797.t1|Name=Gvermi11797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=571bp
MPASAPASSSPSTASAPSAPSLTQLLISLDADKPSHTADVLDQIRRSLPT
LPSSSSSLVASALSSLLCNAPTNLLLSHRSVAILAHPALKPRNVPVEPAI
VLSMERLLMSAAFQHTALAALQNNASTNTTHRDSIISAVAAAMRAHSSNT
GLLLRGADLLAFHLTQRTPAPHTSTVRVAASTISSSAHLLCTTASGASTT
LLALLAAARHISSLPFPAPRFSRASNAVIDDYQFASTIALAMSRHCSSVP
VQMHGCELIRVATAPATVIARHAAKEFYTAGCANAVVTALQDHAGDREVV
NRGLTALRAMLLGGGFHGRAPKPGLQLDPDFAEIVADTAHEVSLAIAVKD
RDLSSAAVVLAMDIRAATSQSPRDPSLSHMGKRIMRRIRFGHKHNFYQSE
DTSASSLYSAARFEQLFNDSAPKTAARRSSFATRELIRTRTNAERFAPRD
TKRSKAGKELRNIPRRKGGEEEQVRVQRRWRSVTGYRPRRTGSVDDATQM
GRMHGKVDRKPPLALTGSEAANLSRQPSNIFGAAAGAPTRVVSMDNRVCG
DTDRFRRHARSRMSVQEVAR*
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spliced messenger RNA

>Gvermi11797.t1 ID=Gvermi11797.t1|Name=Gvermi11797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at ScGOVlb_3404:2108150..2109862+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCTCCGCCCCCGCATCTTCTTCGCCTTCCACGGCTTCCGCTCC
TTCCGCCCCTTCCCTCACCCAGCTCCTCATCTCGCTCGACGCCGATAAAC
CATCGCACACCGCCGATGTGCTCGATCAAATCCGCCGCTCTCTCCCTACC
TTGCCTTCGTCTTCCTCCTCCCTCGTCGCCTCCGCGCTCTCCTCCCTCCT
TTGCAACGCCCCGACAAACCTCCTCCTCTCCCATCGTTCCGTTGCGATCC
TGGCCCACCCAGCCCTCAAACCACGCAATGTGCCTGTCGAACCCGCCATT
GTCCTCAGCATGGAGCGCCTCCTTATGTCTGCCGCCTTCCAACACACCGC
CCTCGCGGCGCTGCAGAACAATGCCTCCACAAACACAACACACCGTGATT
CCATAATCTCCGCCGTTGCCGCCGCCATGCGCGCCCACTCGTCCAACACC
GGCCTTCTGCTGCGCGGTGCCGATTTGCTTGCCTTCCACCTCACACAGCG
CACCCCTGCCCCTCACACTTCAACTGTTCGCGTCGCAGCATCCACAATCT
CCTCTTCGGCCCATCTCTTGTGCACCACAGCCTCTGGCGCCTCCACCACC
CTGCTCGCCCTTCTCGCCGCCGCCCGCCATATTTCATCATTACCCTTTCC
CGCCCCTCGTTTCTCTCGCGCTTCAAACGCCGTCATCGACGACTACCAGT
TTGCAAGCACAATCGCCCTCGCAATGTCCCGCCATTGTTCCAGTGTTCCC
GTGCAAATGCACGGCTGTGAGCTTATTCGTGTTGCCACAGCCCCGGCCAC
AGTCATTGCCCGCCATGCTGCAAAAGAGTTCTACACCGCTGGCTGTGCTA
ACGCTGTTGTCACGGCTCTGCAGGACCATGCGGGTGATCGAGAAGTTGTC
AACAGGGGTCTCACCGCCCTGCGCGCCATGCTTCTTGGCGGCGGCTTTCA
TGGAAGAGCGCCAAAGCCCGGTTTGCAGCTCGACCCCGATTTTGCTGAGA
TTGTTGCTGACACGGCACACGAGGTCAGTCTTGCCATCGCCGTCAAGGAC
CGAGATTTATCTTCGGCCGCAGTTGTTCTTGCCATGGATATCCGCGCCGC
CACCTCCCAGTCTCCGAGAGACCCTTCTCTGTCGCACATGGGAAAGCGTA
TCATGAGGCGCATCCGTTTCGGACACAAGCATAATTTCTACCAATCAGAA
GACACATCCGCCTCCTCGCTGTACAGCGCCGCTCGCTTTGAACAACTTTT
CAACGATTCTGCGCCGAAAACGGCCGCCAGGAGAAGTTCATTCGCAACCA
GAGAACTAATCAGAACCCGCACGAACGCGGAACGGTTCGCACCACGTGAC
ACAAAACGATCGAAAGCGGGTAAAGAATTGAGAAACATCCCGCGGCGAAA
GGGGGGCGAAGAGGAACAAGTGAGAGTACAGCGGAGGTGGAGGTCCGTCA
CCGGTTATCGCCCGAGACGGACGGGCAGTGTAGATGACGCCACACAAATG
GGGCGGATGCACGGCAAGGTAGACCGGAAACCACCATTAGCTCTCACTGG
ATCTGAAGCCGCCAACTTGTCAAGGCAGCCCAGTAATATTTTTGGAGCTG
CAGCCGGCGCACCTACTCGTGTAGTCTCCATGGACAATCGTGTGTGTGGC
GACACTGATCGATTCCGGAGACATGCTAGATCCCGTATGTCTGTGCAGGA
AGTGGCAAGATAG
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protein sequence of Gvermi11797.t1

>Gvermi11797.t1 ID=Gvermi11797.t1|Name=Gvermi11797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=571bp
MPASAPASSSPSTASAPSAPSLTQLLISLDADKPSHTADVLDQIRRSLPT
LPSSSSSLVASALSSLLCNAPTNLLLSHRSVAILAHPALKPRNVPVEPAI
VLSMERLLMSAAFQHTALAALQNNASTNTTHRDSIISAVAAAMRAHSSNT
GLLLRGADLLAFHLTQRTPAPHTSTVRVAASTISSSAHLLCTTASGASTT
LLALLAAARHISSLPFPAPRFSRASNAVIDDYQFASTIALAMSRHCSSVP
VQMHGCELIRVATAPATVIARHAAKEFYTAGCANAVVTALQDHAGDREVV
NRGLTALRAMLLGGGFHGRAPKPGLQLDPDFAEIVADTAHEVSLAIAVKD
RDLSSAAVVLAMDIRAATSQSPRDPSLSHMGKRIMRRIRFGHKHNFYQSE
DTSASSLYSAARFEQLFNDSAPKTAARRSSFATRELIRTRTNAERFAPRD
TKRSKAGKELRNIPRRKGGEEEQVRVQRRWRSVTGYRPRRTGSVDDATQM
GRMHGKVDRKPPLALTGSEAANLSRQPSNIFGAAAGAPTRVVSMDNRVCG
DTDRFRRHARSRMSVQEVAR*
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mRNA from alignment at ScGOVlb_3404:2108150..2109862+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11797.t1 ID=Gvermi11797.t1|Name=Gvermi11797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at ScGOVlb_3404:2108150..2109862+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGCCTCCGCCCCCGCATCTTCTTCGCCTTCCACGGCTTCCGCTCC
TTCCGCCCCTTCCCTCACCCAGCTCCTCATCTCGCTCGACGCCGATAAAC
CATCGCACACCGCCGATGTGCTCGATCAAATCCGCCGCTCTCTCCCTACC
TTGCCTTCGTCTTCCTCCTCCCTCGTCGCCTCCGCGCTCTCCTCCCTCCT
TTGCAACGCCCCGACAAACCTCCTCCTCTCCCATCGTTCCGTTGCGATCC
TGGCCCACCCAGCCCTCAAACCACGCAATGTGCCTGTCGAACCCGCCATT
GTCCTCAGCATGGAGCGCCTCCTTATGTCTGCCGCCTTCCAACACACCGC
CCTCGCGGCGCTGCAGAACAATGCCTCCACAAACACAACACACCGTGATT
CCATAATCTCCGCCGTTGCCGCCGCCATGCGCGCCCACTCGTCCAACACC
GGCCTTCTGCTGCGCGGTGCCGATTTGCTTGCCTTCCACCTCACACAGCG
CACCCCTGCCCCTCACACTTCAACTGTTCGCGTCGCAGCATCCACAATCT
CCTCTTCGGCCCATCTCTTGTGCACCACAGCCTCTGGCGCCTCCACCACC
CTGCTCGCCCTTCTCGCCGCCGCCCGCCATATTTCATCATTACCCTTTCC
CGCCCCTCGTTTCTCTCGCGCTTCAAACGCCGTCATCGACGACTACCAGT
TTGCAAGCACAATCGCCCTCGCAATGTCCCGCCATTGTTCCAGTGTTCCC
GTGCAAATGCACGGCTGTGAGCTTATTCGTGTTGCCACAGCCCCGGCCAC
AGTCATTGCCCGCCATGCTGCAAAAGAGTTCTACACCGCTGGCTGTGCTA
ACGCTGTTGTCACGGCTCTGCAGGACCATGCGGGTGATCGAGAAGTTGTC
AACAGGGGTCTCACCGCCCTGCGCGCCATGCTTCTTGGCGGCGGCTTTCA
TGGAAGAGCGCCAAAGCCCGGTTTGCAGCTCGACCCCGATTTTGCTGAGA
TTGTTGCTGACACGGCACACGAGGTCAGTCTTGCCATCGCCGTCAAGGAC
CGAGATTTATCTTCGGCCGCAGTTGTTCTTGCCATGGATATCCGCGCCGC
CACCTCCCAGTCTCCGAGAGACCCTTCTCTGTCGCACATGGGAAAGCGTA
TCATGAGGCGCATCCGTTTCGGACACAAGCATAATTTCTACCAATCAGAA
GACACATCCGCCTCCTCGCTGTACAGCGCCGCTCGCTTTGAACAACTTTT
CAACGATTCTGCGCCGAAAACGGCCGCCAGGAGAAGTTCATTCGCAACCA
GAGAACTAATCAGAACCCGCACGAACGCGGAACGGTTCGCACCACGTGAC
ACAAAACGATCGAAAGCGGGTAAAGAATTGAGAAACATCCCGCGGCGAAA
GGGGGGCGAAGAGGAACAAGTGAGAGTACAGCGGAGGTGGAGGTCCGTCA
CCGGTTATCGCCCGAGACGGACGGGCAGTGTAGATGACGCCACACAAATG
GGGCGGATGCACGGCAAGGTAGACCGGAAACCACCATTAGCTCTCACTGG
ATCTGAAGCCGCCAACTTGTCAAGGCAGCCCAGTAATATTTTTGGAGCTG
CAGCCGGCGCACCTACTCGTGTAGTCTCCATGGACAATCGTGTGTGTGGC
GACACTGATCGATTCCGGAGACATGCTAGATCCCGTATGTCTGTGCAGGA
AGTGGCAAGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2108150..2109862+

>Gvermi11797.t1 ID=Gvermi11797.t1|Name=Gvermi11797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1713bp|location=Sequence derived from alignment at ScGOVlb_3404:2108150..2109862+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGCCTCCGCCCCCGCATCTTCTTCGCCTTCCACGGCTTCCGCTCC
TTCCGCCCCTTCCCTCACCCAGCTCCTCATCTCGCTCGACGCCGATAAAC
CATCGCACACCGCCGATGTGCTCGATCAAATCCGCCGCTCTCTCCCTACC
TTGCCTTCGTCTTCCTCCTCCCTCGTCGCCTCCGCGCTCTCCTCCCTCCT
TTGCAACGCCCCGACAAACCTCCTCCTCTCCCATCGTTCCGTTGCGATCC
TGGCCCACCCAGCCCTCAAACCACGCAATGTGCCTGTCGAACCCGCCATT
GTCCTCAGCATGGAGCGCCTCCTTATGTCTGCCGCCTTCCAACACACCGC
CCTCGCGGCGCTGCAGAACAATGCCTCCACAAACACAACACACCGTGATT
CCATAATCTCCGCCGTTGCCGCCGCCATGCGCGCCCACTCGTCCAACACC
GGCCTTCTGCTGCGCGGTGCCGATTTGCTTGCCTTCCACCTCACACAGCG
CACCCCTGCCCCTCACACTTCAACTGTTCGCGTCGCAGCATCCACAATCT
CCTCTTCGGCCCATCTCTTGTGCACCACAGCCTCTGGCGCCTCCACCACC
CTGCTCGCCCTTCTCGCCGCCGCCCGCCATATTTCATCATTACCCTTTCC
CGCCCCTCGTTTCTCTCGCGCTTCAAACGCCGTCATCGACGACTACCAGT
TTGCAAGCACAATCGCCCTCGCAATGTCCCGCCATTGTTCCAGTGTTCCC
GTGCAAATGCACGGCTGTGAGCTTATTCGTGTTGCCACAGCCCCGGCCAC
AGTCATTGCCCGCCATGCTGCAAAAGAGTTCTACACCGCTGGCTGTGCTA
ACGCTGTTGTCACGGCTCTGCAGGACCATGCGGGTGATCGAGAAGTTGTC
AACAGGGGTCTCACCGCCCTGCGCGCCATGCTTCTTGGCGGCGGCTTTCA
TGGAAGAGCGCCAAAGCCCGGTTTGCAGCTCGACCCCGATTTTGCTGAGA
TTGTTGCTGACACGGCACACGAGGTCAGTCTTGCCATCGCCGTCAAGGAC
CGAGATTTATCTTCGGCCGCAGTTGTTCTTGCCATGGATATCCGCGCCGC
CACCTCCCAGTCTCCGAGAGACCCTTCTCTGTCGCACATGGGAAAGCGTA
TCATGAGGCGCATCCGTTTCGGACACAAGCATAATTTCTACCAATCAGAA
GACACATCCGCCTCCTCGCTGTACAGCGCCGCTCGCTTTGAACAACTTTT
CAACGATTCTGCGCCGAAAACGGCCGCCAGGAGAAGTTCATTCGCAACCA
GAGAACTAATCAGAACCCGCACGAACGCGGAACGGTTCGCACCACGTGAC
ACAAAACGATCGAAAGCGGGTAAAGAATTGAGAAACATCCCGCGGCGAAA
GGGGGGCGAAGAGGAACAAGTGAGAGTACAGCGGAGGTGGAGGTCCGTCA
CCGGTTATCGCCCGAGACGGACGGGCAGTGTAGATGACGCCACACAAATG
GGGCGGATGCACGGCAAGGTAGACCGGAAACCACCATTAGCTCTCACTGG
ATCTGAAGCCGCCAACTTGTCAAGGCAGCCCAGTAATATTTTTGGAGCTG
CAGCCGGCGCACCTACTCGTGTAGTCTCCATGGACAATCGTGTGTGTGGC
GACACTGATCGATTCCGGAGACATGCTAGATCCCGTATGTCTGTGCAGGA
AGTGGCAAGATAG
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