Gvermi11793.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11793.t1
Unique NameGvermi11793.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2088984..2090171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11793Gvermi11793Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2088984..2090171 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11793.t1.stop1Gvermi11793.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2088984..2088986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11793.t1.CDS1Gvermi11793.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2088984..2090171 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11793.t1.exon1Gvermi11793.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2088984..2090171 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11793.t1.start1Gvermi11793.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2090169..2090171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11793.t1Gvermi11793.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2088984..2090171 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11793.t1 ID=Gvermi11793.t1|Name=Gvermi11793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MRVASPERLQTCVQNFLRGINVLPRWIDAAAASSDRPGRGHYEWGNWSDA
LRSLNMWLFGGPWRTIIADIRLAHLVTSISELHKLKDQIVWEIVEQTYIQ
AELQRQSSVPEETVKTRIRSVYSWQRRHDVKKNSLMWFLDFAFVLAAYSE
FQARFLFTDSLIPEWQPETTVPSLTPAQFGTQATQMEQEMIRNNYLPFYA
RVPRLDDAHVLRARHFAQQFCHNVAPPQVVMDTDVRETRGMPREDKAVDF
MTPWLQSMDAQENEQRWQTLINAVINQRPVVADFELFKGEVCRAIVSLLL
LQLTQDPAVDASYVYDMAAVTAVDQSEKELLVPSRLPGQKKKRPVSRRTL
RGALEERIQRYESGYREGLAPPLDPARLHRGGASSSGGPSERGIG*
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spliced messenger RNA

>Gvermi11793.t1 ID=Gvermi11793.t1|Name=Gvermi11793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:2088984..2090171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTAGCATCTCCAGAGAGGCTCCAAACCTGCGTACAAAACTTTCT
GCGGGGCATCAACGTTCTCCCCCGTTGGATAGACGCCGCCGCCGCCTCCA
GCGACCGACCTGGCCGTGGCCATTACGAGTGGGGCAATTGGAGTGATGCA
CTGCGCTCGCTAAACATGTGGCTCTTTGGCGGCCCGTGGCGCACCATTAT
CGCTGACATTCGCTTAGCGCACTTAGTAACCTCTATCTCTGAACTTCACA
AGCTCAAGGACCAAATCGTGTGGGAAATTGTCGAACAGACCTATATTCAA
GCCGAGCTTCAGCGCCAGTCTTCCGTCCCAGAGGAAACCGTTAAGACTCG
TATCCGCAGTGTGTACTCGTGGCAGCGTCGTCACGATGTAAAAAAGAACT
CTTTGATGTGGTTTTTGGACTTCGCGTTCGTTTTAGCAGCGTACTCGGAG
TTTCAAGCCCGTTTCTTGTTCACCGATTCTCTCATCCCTGAGTGGCAGCC
CGAGACAACCGTCCCCTCTCTCACGCCTGCCCAGTTTGGCACCCAGGCCA
CGCAAATGGAACAGGAGATGATACGTAACAACTACCTACCCTTCTATGCG
CGCGTTCCCCGTCTCGACGATGCGCACGTTCTCAGAGCTCGTCACTTTGC
GCAGCAATTTTGTCACAACGTCGCTCCTCCTCAGGTTGTCATGGATACTG
ACGTGCGAGAGACTCGCGGGATGCCCCGGGAGGATAAAGCTGTTGATTTT
ATGACGCCTTGGTTACAGTCGATGGATGCCCAGGAGAACGAGCAACGGTG
GCAGACGCTCATCAACGCCGTCATCAACCAAAGGCCTGTCGTCGCCGATT
TTGAGCTCTTTAAAGGTGAAGTATGTCGCGCCATCGTCAGTCTTCTATTG
CTACAACTAACACAGGATCCGGCTGTGGATGCCTCGTATGTGTACGACAT
GGCGGCCGTCACGGCGGTGGATCAGAGCGAAAAGGAGCTTCTGGTCCCGT
CGCGCTTGCCTGGTCAGAAGAAGAAGCGCCCAGTGTCTCGCCGCACACTT
CGAGGCGCGTTGGAGGAACGAATCCAGAGATACGAATCCGGGTATCGAGA
GGGTTTGGCTCCACCTCTCGACCCAGCTCGCCTTCACCGGGGTGGTGCGT
CGTCATCTGGAGGGCCGTCTGAACGGGGAATTGGTTGA
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protein sequence of Gvermi11793.t1

>Gvermi11793.t1 ID=Gvermi11793.t1|Name=Gvermi11793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MRVASPERLQTCVQNFLRGINVLPRWIDAAAASSDRPGRGHYEWGNWSDA
LRSLNMWLFGGPWRTIIADIRLAHLVTSISELHKLKDQIVWEIVEQTYIQ
AELQRQSSVPEETVKTRIRSVYSWQRRHDVKKNSLMWFLDFAFVLAAYSE
FQARFLFTDSLIPEWQPETTVPSLTPAQFGTQATQMEQEMIRNNYLPFYA
RVPRLDDAHVLRARHFAQQFCHNVAPPQVVMDTDVRETRGMPREDKAVDF
MTPWLQSMDAQENEQRWQTLINAVINQRPVVADFELFKGEVCRAIVSLLL
LQLTQDPAVDASYVYDMAAVTAVDQSEKELLVPSRLPGQKKKRPVSRRTL
RGALEERIQRYESGYREGLAPPLDPARLHRGGASSSGGPSERGIG*
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mRNA from alignment at ScGOVlb_3404:2088984..2090171-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11793.t1 ID=Gvermi11793.t1|Name=Gvermi11793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:2088984..2090171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTAGCATCTCCAGAGAGGCTCCAAACCTGCGTACAAAACTTTCT
GCGGGGCATCAACGTTCTCCCCCGTTGGATAGACGCCGCCGCCGCCTCCA
GCGACCGACCTGGCCGTGGCCATTACGAGTGGGGCAATTGGAGTGATGCA
CTGCGCTCGCTAAACATGTGGCTCTTTGGCGGCCCGTGGCGCACCATTAT
CGCTGACATTCGCTTAGCGCACTTAGTAACCTCTATCTCTGAACTTCACA
AGCTCAAGGACCAAATCGTGTGGGAAATTGTCGAACAGACCTATATTCAA
GCCGAGCTTCAGCGCCAGTCTTCCGTCCCAGAGGAAACCGTTAAGACTCG
TATCCGCAGTGTGTACTCGTGGCAGCGTCGTCACGATGTAAAAAAGAACT
CTTTGATGTGGTTTTTGGACTTCGCGTTCGTTTTAGCAGCGTACTCGGAG
TTTCAAGCCCGTTTCTTGTTCACCGATTCTCTCATCCCTGAGTGGCAGCC
CGAGACAACCGTCCCCTCTCTCACGCCTGCCCAGTTTGGCACCCAGGCCA
CGCAAATGGAACAGGAGATGATACGTAACAACTACCTACCCTTCTATGCG
CGCGTTCCCCGTCTCGACGATGCGCACGTTCTCAGAGCTCGTCACTTTGC
GCAGCAATTTTGTCACAACGTCGCTCCTCCTCAGGTTGTCATGGATACTG
ACGTGCGAGAGACTCGCGGGATGCCCCGGGAGGATAAAGCTGTTGATTTT
ATGACGCCTTGGTTACAGTCGATGGATGCCCAGGAGAACGAGCAACGGTG
GCAGACGCTCATCAACGCCGTCATCAACCAAAGGCCTGTCGTCGCCGATT
TTGAGCTCTTTAAAGGTGAAGTATGTCGCGCCATCGTCAGTCTTCTATTG
CTACAACTAACACAGGATCCGGCTGTGGATGCCTCGTATGTGTACGACAT
GGCGGCCGTCACGGCGGTGGATCAGAGCGAAAAGGAGCTTCTGGTCCCGT
CGCGCTTGCCTGGTCAGAAGAAGAAGCGCCCAGTGTCTCGCCGCACACTT
CGAGGCGCGTTGGAGGAACGAATCCAGAGATACGAATCCGGGTATCGAGA
GGGTTTGGCTCCACCTCTCGACCCAGCTCGCCTTCACCGGGGTGGTGCGT
CGTCATCTGGAGGGCCGTCTGAACGGGGAATTGGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2088984..2090171-

>Gvermi11793.t1 ID=Gvermi11793.t1|Name=Gvermi11793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:2088984..2090171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTAGCATCTCCAGAGAGGCTCCAAACCTGCGTACAAAACTTTCT
GCGGGGCATCAACGTTCTCCCCCGTTGGATAGACGCCGCCGCCGCCTCCA
GCGACCGACCTGGCCGTGGCCATTACGAGTGGGGCAATTGGAGTGATGCA
CTGCGCTCGCTAAACATGTGGCTCTTTGGCGGCCCGTGGCGCACCATTAT
CGCTGACATTCGCTTAGCGCACTTAGTAACCTCTATCTCTGAACTTCACA
AGCTCAAGGACCAAATCGTGTGGGAAATTGTCGAACAGACCTATATTCAA
GCCGAGCTTCAGCGCCAGTCTTCCGTCCCAGAGGAAACCGTTAAGACTCG
TATCCGCAGTGTGTACTCGTGGCAGCGTCGTCACGATGTAAAAAAGAACT
CTTTGATGTGGTTTTTGGACTTCGCGTTCGTTTTAGCAGCGTACTCGGAG
TTTCAAGCCCGTTTCTTGTTCACCGATTCTCTCATCCCTGAGTGGCAGCC
CGAGACAACCGTCCCCTCTCTCACGCCTGCCCAGTTTGGCACCCAGGCCA
CGCAAATGGAACAGGAGATGATACGTAACAACTACCTACCCTTCTATGCG
CGCGTTCCCCGTCTCGACGATGCGCACGTTCTCAGAGCTCGTCACTTTGC
GCAGCAATTTTGTCACAACGTCGCTCCTCCTCAGGTTGTCATGGATACTG
ACGTGCGAGAGACTCGCGGGATGCCCCGGGAGGATAAAGCTGTTGATTTT
ATGACGCCTTGGTTACAGTCGATGGATGCCCAGGAGAACGAGCAACGGTG
GCAGACGCTCATCAACGCCGTCATCAACCAAAGGCCTGTCGTCGCCGATT
TTGAGCTCTTTAAAGGTGAAGTATGTCGCGCCATCGTCAGTCTTCTATTG
CTACAACTAACACAGGATCCGGCTGTGGATGCCTCGTATGTGTACGACAT
GGCGGCCGTCACGGCGGTGGATCAGAGCGAAAAGGAGCTTCTGGTCCCGT
CGCGCTTGCCTGGTCAGAAGAAGAAGCGCCCAGTGTCTCGCCGCACACTT
CGAGGCGCGTTGGAGGAACGAATCCAGAGATACGAATCCGGGTATCGAGA
GGGTTTGGCTCCACCTCTCGACCCAGCTCGCCTTCACCGGGGTGGTGCGT
CGTCATCTGGAGGGCCGTCTGAACGGGGAATTGGTTGA
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