Gvermi11789.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11789.t1
Unique NameGvermi11789.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length720
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2074931..2077090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps21268
PFAMsPHD,zf-CXXC
Max annot lvl2836|Bacillariophyta
Evalue8.26e-06
EggNOG OGsCOG0553@1|root,KOG2177@1|root,KOG0383@2759|Eukaryota,KOG2177@2759|Eukaryota,2XF8R@2836|Bacillariophyta
DescriptionCXXC zinc finger domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11789Gvermi11789Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2074931..2077090 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11789.t1.stop1Gvermi11789.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2074931..2074933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11789.t1.CDS1Gvermi11789.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2074931..2077090 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11789.t1.exon1Gvermi11789.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2074931..2077090 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11789.t1.start1Gvermi11789.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2077088..2077090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11789.t1Gvermi11789.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2074931..2077090 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11789.t1 ID=Gvermi11789.t1|Name=Gvermi11789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp
MMEADLTIVHVRPRTEEERLRDATLEAEAEDPIDPVVSNPTSLTILHTEP
VTPLGKSRRHVSETHSSYSNALKCPPMNPTKKRENSRRERLKKTSRIYYK
RFLHEQSEMDEEGKFDKKSCGVMPSSQVNESRSDKQARMESLRGAVNIYL
FPEKNEPPGRGQNALDLLMKNTKGTNNDGDSCVDVLNMVFEAMKRNTMDS
VVQEKGCHLLTKLARDSEEVQTEIVRRGAVQLIINAMANHTKTPELQSRA
IGTLLCLTMNETARAQIVEQRGAELISWAMKEFPDMLQLHKVGATCLCNL
AFSSEENKRRIGRIGGIHAVVSAMNKFVANADLQARCCLALRNLTYGLRA
NQWIAGRCQAMEAVLQSMRLMKSDMNIQYQGCVALANMCADEGENRPRAA
DLKVHKVAIDLMRKHMENSSLSEHAMTVLRNICILSGQNQASVGEDGGID
LILSCMKVHRFNKRVIERGCSVLRYLFFNKANRLRFAECNGIDAMVRIMR
DAADHLDVSEAVIYAIGNAVYDNLDSKRAVGRLGGISALVEIMSNHLDSA
AIQEHACRALRNLADADELNLRLITECGAIDAVLLAMMGYLDNGNIQEQG
CAMLVNVTMLEEGLRQMRELEAQLVVKRSKGMHIDKERVQCQAAALLTRL
EQGPSAHMVPPTLPRKKTSRVDAFRRVAPRGTFGKRPKPEAKHALWSRGT
DDTVYNGKLVRLVGSSEST*
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spliced messenger RNA

>Gvermi11789.t1 ID=Gvermi11789.t1|Name=Gvermi11789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2160bp|location=Sequence derived from alignment at ScGOVlb_3404:2074931..2077090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGAAGCTGACCTGACTATTGTGCATGTTCGGCCGAGAACTGAAGA
AGAACGGCTTAGAGATGCAACTCTCGAAGCTGAAGCTGAGGATCCCATTG
ACCCAGTCGTGTCAAATCCAACATCTCTTACCATATTGCATACCGAACCG
GTGACACCCCTTGGGAAAAGCAGAAGACATGTTTCAGAAACTCATTCATC
GTATTCGAATGCATTGAAATGCCCACCAATGAACCCTACGAAGAAGAGAG
AAAATTCTAGGAGGGAAAGGCTAAAGAAAACTAGCCGAATTTATTACAAA
CGTTTCCTTCACGAACAATCGGAAATGGATGAAGAGGGAAAGTTTGATAA
AAAGTCGTGTGGTGTAATGCCTTCGAGTCAAGTTAATGAATCGAGATCTG
ATAAACAAGCTAGAATGGAAAGTTTACGAGGCGCAGTCAATATATACTTA
TTTCCCGAGAAGAATGAACCCCCCGGAAGGGGACAGAATGCTTTAGATTT
GCTGATGAAGAACACAAAAGGTACAAACAATGATGGAGATTCCTGTGTAG
ATGTGCTTAACATGGTTTTCGAGGCGATGAAGCGAAATACCATGGACTCA
GTCGTGCAAGAAAAAGGATGCCATCTTTTGACAAAACTGGCTCGTGATTC
TGAGGAAGTGCAAACTGAGATCGTTCGAAGGGGTGCAGTGCAGCTAATTA
TCAATGCGATGGCTAACCACACCAAGACCCCTGAACTGCAAAGCCGAGCA
ATTGGCACACTCTTGTGTCTTACGATGAACGAGACGGCACGAGCTCAGAT
CGTGGAGCAGAGAGGGGCAGAGTTAATTTCTTGGGCCATGAAGGAATTCC
CAGACATGTTGCAGCTACATAAGGTTGGGGCTACATGTCTATGCAATCTT
GCCTTCAGCTCTGAGGAAAATAAACGGAGAATAGGTAGGATCGGGGGAAT
ACACGCTGTTGTGAGTGCCATGAACAAGTTTGTTGCGAACGCAGACCTAC
AAGCAAGATGTTGCCTCGCTCTGAGGAACCTGACATATGGACTGAGAGCT
AATCAATGGATTGCAGGTCGATGTCAGGCTATGGAAGCTGTTCTTCAATC
TATGAGATTAATGAAGTCAGATATGAATATTCAATACCAGGGATGTGTAG
CATTGGCGAATATGTGTGCGGATGAGGGAGAAAATCGGCCACGAGCTGCA
GATCTCAAGGTGCATAAGGTTGCTATAGATCTCATGAGAAAGCATATGGA
AAATTCGTCTTTGAGTGAACATGCAATGACAGTACTTCGCAATATATGCA
TTCTTAGTGGCCAGAACCAAGCTAGTGTCGGCGAAGATGGTGGAATTGAT
TTAATTCTGTCCTGCATGAAGGTACATCGCTTCAATAAGAGAGTTATTGA
AAGAGGATGTAGTGTTCTGAGATATCTGTTTTTCAACAAAGCAAACAGAT
TGCGATTTGCAGAGTGTAACGGAATTGACGCTATGGTACGGATAATGAGG
GATGCTGCAGACCATTTGGACGTCAGTGAAGCAGTGATTTATGCAATCGG
TAATGCCGTTTACGATAACCTGGACAGCAAACGAGCCGTTGGGAGACTGG
GAGGCATTTCAGCCCTCGTCGAGATAATGTCGAATCATCTCGATTCTGCT
GCGATTCAAGAACACGCATGTCGCGCTTTACGTAATCTAGCCGACGCCGA
TGAACTTAATCTCCGACTTATAACAGAATGTGGAGCGATTGATGCCGTAC
TGCTTGCTATGATGGGGTACCTGGATAACGGAAATATCCAAGAACAGGGA
TGTGCAATGTTGGTCAACGTGACGATGTTGGAAGAGGGTCTGAGGCAAAT
GAGAGAACTTGAGGCACAGCTTGTGGTCAAAAGGTCAAAGGGTATGCATA
TTGACAAGGAAAGGGTGCAGTGTCAGGCTGCAGCCTTGTTGACACGGCTC
GAGCAAGGCCCAAGCGCACACATGGTTCCACCGACACTTCCGAGGAAAAA
AACTTCCAGGGTGGATGCTTTTCGGAGAGTAGCCCCACGAGGAACATTCG
GTAAGCGACCAAAACCCGAAGCTAAACACGCTCTCTGGAGCCGTGGCACC
GATGATACCGTGTACAATGGCAAGCTTGTGCGGCTGGTGGGCAGCTCTGA
GAGTACATAA
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protein sequence of Gvermi11789.t1

>Gvermi11789.t1 ID=Gvermi11789.t1|Name=Gvermi11789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=720bp
MMEADLTIVHVRPRTEEERLRDATLEAEAEDPIDPVVSNPTSLTILHTEP
VTPLGKSRRHVSETHSSYSNALKCPPMNPTKKRENSRRERLKKTSRIYYK
RFLHEQSEMDEEGKFDKKSCGVMPSSQVNESRSDKQARMESLRGAVNIYL
FPEKNEPPGRGQNALDLLMKNTKGTNNDGDSCVDVLNMVFEAMKRNTMDS
VVQEKGCHLLTKLARDSEEVQTEIVRRGAVQLIINAMANHTKTPELQSRA
IGTLLCLTMNETARAQIVEQRGAELISWAMKEFPDMLQLHKVGATCLCNL
AFSSEENKRRIGRIGGIHAVVSAMNKFVANADLQARCCLALRNLTYGLRA
NQWIAGRCQAMEAVLQSMRLMKSDMNIQYQGCVALANMCADEGENRPRAA
DLKVHKVAIDLMRKHMENSSLSEHAMTVLRNICILSGQNQASVGEDGGID
LILSCMKVHRFNKRVIERGCSVLRYLFFNKANRLRFAECNGIDAMVRIMR
DAADHLDVSEAVIYAIGNAVYDNLDSKRAVGRLGGISALVEIMSNHLDSA
AIQEHACRALRNLADADELNLRLITECGAIDAVLLAMMGYLDNGNIQEQG
CAMLVNVTMLEEGLRQMRELEAQLVVKRSKGMHIDKERVQCQAAALLTRL
EQGPSAHMVPPTLPRKKTSRVDAFRRVAPRGTFGKRPKPEAKHALWSRGT
DDTVYNGKLVRLVGSSEST*
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mRNA from alignment at ScGOVlb_3404:2074931..2077090-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11789.t1 ID=Gvermi11789.t1|Name=Gvermi11789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2160bp|location=Sequence derived from alignment at ScGOVlb_3404:2074931..2077090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGAAGCTGACCTGACTATTGTGCATGTTCGGCCGAGAACTGAAGA
AGAACGGCTTAGAGATGCAACTCTCGAAGCTGAAGCTGAGGATCCCATTG
ACCCAGTCGTGTCAAATCCAACATCTCTTACCATATTGCATACCGAACCG
GTGACACCCCTTGGGAAAAGCAGAAGACATGTTTCAGAAACTCATTCATC
GTATTCGAATGCATTGAAATGCCCACCAATGAACCCTACGAAGAAGAGAG
AAAATTCTAGGAGGGAAAGGCTAAAGAAAACTAGCCGAATTTATTACAAA
CGTTTCCTTCACGAACAATCGGAAATGGATGAAGAGGGAAAGTTTGATAA
AAAGTCGTGTGGTGTAATGCCTTCGAGTCAAGTTAATGAATCGAGATCTG
ATAAACAAGCTAGAATGGAAAGTTTACGAGGCGCAGTCAATATATACTTA
TTTCCCGAGAAGAATGAACCCCCCGGAAGGGGACAGAATGCTTTAGATTT
GCTGATGAAGAACACAAAAGGTACAAACAATGATGGAGATTCCTGTGTAG
ATGTGCTTAACATGGTTTTCGAGGCGATGAAGCGAAATACCATGGACTCA
GTCGTGCAAGAAAAAGGATGCCATCTTTTGACAAAACTGGCTCGTGATTC
TGAGGAAGTGCAAACTGAGATCGTTCGAAGGGGTGCAGTGCAGCTAATTA
TCAATGCGATGGCTAACCACACCAAGACCCCTGAACTGCAAAGCCGAGCA
ATTGGCACACTCTTGTGTCTTACGATGAACGAGACGGCACGAGCTCAGAT
CGTGGAGCAGAGAGGGGCAGAGTTAATTTCTTGGGCCATGAAGGAATTCC
CAGACATGTTGCAGCTACATAAGGTTGGGGCTACATGTCTATGCAATCTT
GCCTTCAGCTCTGAGGAAAATAAACGGAGAATAGGTAGGATCGGGGGAAT
ACACGCTGTTGTGAGTGCCATGAACAAGTTTGTTGCGAACGCAGACCTAC
AAGCAAGATGTTGCCTCGCTCTGAGGAACCTGACATATGGACTGAGAGCT
AATCAATGGATTGCAGGTCGATGTCAGGCTATGGAAGCTGTTCTTCAATC
TATGAGATTAATGAAGTCAGATATGAATATTCAATACCAGGGATGTGTAG
CATTGGCGAATATGTGTGCGGATGAGGGAGAAAATCGGCCACGAGCTGCA
GATCTCAAGGTGCATAAGGTTGCTATAGATCTCATGAGAAAGCATATGGA
AAATTCGTCTTTGAGTGAACATGCAATGACAGTACTTCGCAATATATGCA
TTCTTAGTGGCCAGAACCAAGCTAGTGTCGGCGAAGATGGTGGAATTGAT
TTAATTCTGTCCTGCATGAAGGTACATCGCTTCAATAAGAGAGTTATTGA
AAGAGGATGTAGTGTTCTGAGATATCTGTTTTTCAACAAAGCAAACAGAT
TGCGATTTGCAGAGTGTAACGGAATTGACGCTATGGTACGGATAATGAGG
GATGCTGCAGACCATTTGGACGTCAGTGAAGCAGTGATTTATGCAATCGG
TAATGCCGTTTACGATAACCTGGACAGCAAACGAGCCGTTGGGAGACTGG
GAGGCATTTCAGCCCTCGTCGAGATAATGTCGAATCATCTCGATTCTGCT
GCGATTCAAGAACACGCATGTCGCGCTTTACGTAATCTAGCCGACGCCGA
TGAACTTAATCTCCGACTTATAACAGAATGTGGAGCGATTGATGCCGTAC
TGCTTGCTATGATGGGGTACCTGGATAACGGAAATATCCAAGAACAGGGA
TGTGCAATGTTGGTCAACGTGACGATGTTGGAAGAGGGTCTGAGGCAAAT
GAGAGAACTTGAGGCACAGCTTGTGGTCAAAAGGTCAAAGGGTATGCATA
TTGACAAGGAAAGGGTGCAGTGTCAGGCTGCAGCCTTGTTGACACGGCTC
GAGCAAGGCCCAAGCGCACACATGGTTCCACCGACACTTCCGAGGAAAAA
AACTTCCAGGGTGGATGCTTTTCGGAGAGTAGCCCCACGAGGAACATTCG
GTAAGCGACCAAAACCCGAAGCTAAACACGCTCTCTGGAGCCGTGGCACC
GATGATACCGTGTACAATGGCAAGCTTGTGCGGCTGGTGGGCAGCTCTGA
GAGTACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2074931..2077090-

>Gvermi11789.t1 ID=Gvermi11789.t1|Name=Gvermi11789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2160bp|location=Sequence derived from alignment at ScGOVlb_3404:2074931..2077090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGAAGCTGACCTGACTATTGTGCATGTTCGGCCGAGAACTGAAGA
AGAACGGCTTAGAGATGCAACTCTCGAAGCTGAAGCTGAGGATCCCATTG
ACCCAGTCGTGTCAAATCCAACATCTCTTACCATATTGCATACCGAACCG
GTGACACCCCTTGGGAAAAGCAGAAGACATGTTTCAGAAACTCATTCATC
GTATTCGAATGCATTGAAATGCCCACCAATGAACCCTACGAAGAAGAGAG
AAAATTCTAGGAGGGAAAGGCTAAAGAAAACTAGCCGAATTTATTACAAA
CGTTTCCTTCACGAACAATCGGAAATGGATGAAGAGGGAAAGTTTGATAA
AAAGTCGTGTGGTGTAATGCCTTCGAGTCAAGTTAATGAATCGAGATCTG
ATAAACAAGCTAGAATGGAAAGTTTACGAGGCGCAGTCAATATATACTTA
TTTCCCGAGAAGAATGAACCCCCCGGAAGGGGACAGAATGCTTTAGATTT
GCTGATGAAGAACACAAAAGGTACAAACAATGATGGAGATTCCTGTGTAG
ATGTGCTTAACATGGTTTTCGAGGCGATGAAGCGAAATACCATGGACTCA
GTCGTGCAAGAAAAAGGATGCCATCTTTTGACAAAACTGGCTCGTGATTC
TGAGGAAGTGCAAACTGAGATCGTTCGAAGGGGTGCAGTGCAGCTAATTA
TCAATGCGATGGCTAACCACACCAAGACCCCTGAACTGCAAAGCCGAGCA
ATTGGCACACTCTTGTGTCTTACGATGAACGAGACGGCACGAGCTCAGAT
CGTGGAGCAGAGAGGGGCAGAGTTAATTTCTTGGGCCATGAAGGAATTCC
CAGACATGTTGCAGCTACATAAGGTTGGGGCTACATGTCTATGCAATCTT
GCCTTCAGCTCTGAGGAAAATAAACGGAGAATAGGTAGGATCGGGGGAAT
ACACGCTGTTGTGAGTGCCATGAACAAGTTTGTTGCGAACGCAGACCTAC
AAGCAAGATGTTGCCTCGCTCTGAGGAACCTGACATATGGACTGAGAGCT
AATCAATGGATTGCAGGTCGATGTCAGGCTATGGAAGCTGTTCTTCAATC
TATGAGATTAATGAAGTCAGATATGAATATTCAATACCAGGGATGTGTAG
CATTGGCGAATATGTGTGCGGATGAGGGAGAAAATCGGCCACGAGCTGCA
GATCTCAAGGTGCATAAGGTTGCTATAGATCTCATGAGAAAGCATATGGA
AAATTCGTCTTTGAGTGAACATGCAATGACAGTACTTCGCAATATATGCA
TTCTTAGTGGCCAGAACCAAGCTAGTGTCGGCGAAGATGGTGGAATTGAT
TTAATTCTGTCCTGCATGAAGGTACATCGCTTCAATAAGAGAGTTATTGA
AAGAGGATGTAGTGTTCTGAGATATCTGTTTTTCAACAAAGCAAACAGAT
TGCGATTTGCAGAGTGTAACGGAATTGACGCTATGGTACGGATAATGAGG
GATGCTGCAGACCATTTGGACGTCAGTGAAGCAGTGATTTATGCAATCGG
TAATGCCGTTTACGATAACCTGGACAGCAAACGAGCCGTTGGGAGACTGG
GAGGCATTTCAGCCCTCGTCGAGATAATGTCGAATCATCTCGATTCTGCT
GCGATTCAAGAACACGCATGTCGCGCTTTACGTAATCTAGCCGACGCCGA
TGAACTTAATCTCCGACTTATAACAGAATGTGGAGCGATTGATGCCGTAC
TGCTTGCTATGATGGGGTACCTGGATAACGGAAATATCCAAGAACAGGGA
TGTGCAATGTTGGTCAACGTGACGATGTTGGAAGAGGGTCTGAGGCAAAT
GAGAGAACTTGAGGCACAGCTTGTGGTCAAAAGGTCAAAGGGTATGCATA
TTGACAAGGAAAGGGTGCAGTGTCAGGCTGCAGCCTTGTTGACACGGCTC
GAGCAAGGCCCAAGCGCACACATGGTTCCACCGACACTTCCGAGGAAAAA
AACTTCCAGGGTGGATGCTTTTCGGAGAGTAGCCCCACGAGGAACATTCG
GTAAGCGACCAAAACCCGAAGCTAAACACGCTCTCTGGAGCCGTGGCACC
GATGATACCGTGTACAATGGCAAGCTTGTGCGGCTGGTGGGCAGCTCTGA
GAGTACATAA
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