Gvermi11779.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11779.t1
Unique Name	Gvermi11779.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	365

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2042201..2043295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708324.1
PFAMs	Branch
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG Reaction	R05925,R06189
KEGG Pathway	ko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG Module	M00057
GOs	GO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue	3.48e-09
EggNOG OGs	KOG0799@1\|root,KOG0799@2759\|Eukaryota
EC	2.4.1.150,2.4.2.26
Description	acetylglucosaminyltransferase activity
COG category	O
CAZy	GT14
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11779	Gvermi11779	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2042201..2043295 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11779.t1.start1	Gvermi11779.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2042201..2042203 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11779.t1.CDS1	Gvermi11779.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2042201..2043295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11779.t1.exon1	Gvermi11779.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2042201..2043295 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11779.t1.stop1	Gvermi11779.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2043293..2043295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11779.t1	Gvermi11779.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2042201..2043295 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2042201..2043295+
coding sequence from alignment at ScGOVlb_3404:2042201..2043295+

mRNA sequence

>Gvermi11779.t1 ID=Gvermi11779.t1|Name=Gvermi11779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=365bp
MSALHWRGCAVYATLCFFTSIVSGSFQQSNVPQTEATIAFHVNVRQSNVA
FLRRFLYRIYHKDNLYLVDYSPPLQPDLYVSVLDKQNVYHRAADPFVENG
VSEVINILDGMAFFLDREENLAVPGHSFDYYVHCTPDYYPALNPTHMRQV
LSVESGTQLPPNFVHFFHETQVPFFASEINRVVLDLSLSFNRTLPHTTKL
HQMNILHPDYKKRNMAFPRALKRFVVNHAFVELATDSMLSKRLLLTLGDT
SHVDERFFAALIANNKKDIGKVIRTTSLQCVNSVAIDTAVSRSLPNYSPH
PITIEFLQDTAEPCLFAGPFSDADDAVLTKIDKELLIPPGTQGKPGGLGF
HDHVYQKLQKLIAN*

spliced messenger RNA

>Gvermi11779.t1 ID=Gvermi11779.t1|Name=Gvermi11779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at ScGOVlb_3404:2042201..2043295+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGCTCCACTGGCGAGGCTGTGCCGTTTACGCAACCCTTTGTTT
CTTCACGAGCATCGTTTCGGGTTCCTTTCAGCAGAGCAATGTTCCGCAAA
CCGAAGCGACGATAGCGTTTCATGTGAACGTGAGGCAATCAAACGTGGCG
TTCCTCCGACGATTTCTCTACCGCATATACCACAAAGACAACCTGTACCT
GGTCGACTATTCCCCACCACTGCAACCTGATTTATACGTAAGCGTTCTCG
ACAAGCAAAATGTATACCACAGAGCAGCGGATCCGTTTGTAGAAAACGGA
GTTTCGGAGGTTATCAATATACTAGATGGTATGGCTTTCTTTCTCGATCG
CGAGGAAAATCTCGCTGTTCCGGGCCATTCCTTTGACTACTATGTTCATT
GCACACCTGATTATTACCCCGCATTGAATCCTACTCACATGCGACAGGTT
CTCTCGGTCGAAAGCGGAACGCAACTGCCGCCCAACTTTGTTCATTTCTT
CCATGAGACGCAAGTTCCCTTCTTCGCCAGCGAGATCAACCGTGTCGTTC
TCGATCTCTCCCTCTCATTCAACCGCACCCTCCCACACACCACAAAACTG
CATCAGATGAATATCCTGCATCCCGATTACAAAAAGCGAAACATGGCGTT
TCCGCGCGCGCTGAAACGTTTTGTTGTGAATCATGCTTTTGTAGAACTTG
CTACCGACTCCATGTTATCAAAGCGCTTGCTCCTGACGCTAGGCGACACC
TCTCATGTGGATGAGCGGTTTTTCGCCGCTCTGATAGCAAACAATAAGAA
AGATATTGGCAAGGTGATACGCACAACTTCGCTGCAATGCGTCAATTCAG
TTGCAATAGATACAGCGGTTTCGCGTTCACTACCCAACTACAGTCCGCAC
CCGATAACAATAGAGTTTCTACAGGATACTGCGGAGCCGTGTCTCTTTGC
CGGCCCGTTTTCTGACGCAGATGACGCTGTTCTCACGAAGATTGACAAGG
AACTACTTATCCCTCCGGGAACCCAGGGAAAGCCTGGCGGGCTTGGATTT
CACGATCATGTATACCAAAAGTTACAGAAGTTGATCGCGAACTGA

protein sequence of Gvermi11779.t1

>Gvermi11779.t1 ID=Gvermi11779.t1|Name=Gvermi11779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=365bp
MSALHWRGCAVYATLCFFTSIVSGSFQQSNVPQTEATIAFHVNVRQSNVA
FLRRFLYRIYHKDNLYLVDYSPPLQPDLYVSVLDKQNVYHRAADPFVENG
VSEVINILDGMAFFLDREENLAVPGHSFDYYVHCTPDYYPALNPTHMRQV
LSVESGTQLPPNFVHFFHETQVPFFASEINRVVLDLSLSFNRTLPHTTKL
HQMNILHPDYKKRNMAFPRALKRFVVNHAFVELATDSMLSKRLLLTLGDT
SHVDERFFAALIANNKKDIGKVIRTTSLQCVNSVAIDTAVSRSLPNYSPH
PITIEFLQDTAEPCLFAGPFSDADDAVLTKIDKELLIPPGTQGKPGGLGF
HDHVYQKLQKLIAN*

mRNA from alignment at ScGOVlb_3404:2042201..2043295+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11779.t1 ID=Gvermi11779.t1|Name=Gvermi11779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at ScGOVlb_3404:2042201..2043295+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGCGCTCCACTGGCGAGGCTGTGCCGTTTACGCAACCCTTTGTTT
CTTCACGAGCATCGTTTCGGGTTCCTTTCAGCAGAGCAATGTTCCGCAAA
CCGAAGCGACGATAGCGTTTCATGTGAACGTGAGGCAATCAAACGTGGCG
TTCCTCCGACGATTTCTCTACCGCATATACCACAAAGACAACCTGTACCT
GGTCGACTATTCCCCACCACTGCAACCTGATTTATACGTAAGCGTTCTCG
ACAAGCAAAATGTATACCACAGAGCAGCGGATCCGTTTGTAGAAAACGGA
GTTTCGGAGGTTATCAATATACTAGATGGTATGGCTTTCTTTCTCGATCG
CGAGGAAAATCTCGCTGTTCCGGGCCATTCCTTTGACTACTATGTTCATT
GCACACCTGATTATTACCCCGCATTGAATCCTACTCACATGCGACAGGTT
CTCTCGGTCGAAAGCGGAACGCAACTGCCGCCCAACTTTGTTCATTTCTT
CCATGAGACGCAAGTTCCCTTCTTCGCCAGCGAGATCAACCGTGTCGTTC
TCGATCTCTCCCTCTCATTCAACCGCACCCTCCCACACACCACAAAACTG
CATCAGATGAATATCCTGCATCCCGATTACAAAAAGCGAAACATGGCGTT
TCCGCGCGCGCTGAAACGTTTTGTTGTGAATCATGCTTTTGTAGAACTTG
CTACCGACTCCATGTTATCAAAGCGCTTGCTCCTGACGCTAGGCGACACC
TCTCATGTGGATGAGCGGTTTTTCGCCGCTCTGATAGCAAACAATAAGAA
AGATATTGGCAAGGTGATACGCACAACTTCGCTGCAATGCGTCAATTCAG
TTGCAATAGATACAGCGGTTTCGCGTTCACTACCCAACTACAGTCCGCAC
CCGATAACAATAGAGTTTCTACAGGATACTGCGGAGCCGTGTCTCTTTGC
CGGCCCGTTTTCTGACGCAGATGACGCTGTTCTCACGAAGATTGACAAGG
AACTACTTATCCCTCCGGGAACCCAGGGAAAGCCTGGCGGGCTTGGATTT
CACGATCATGTATACCAAAAGTTACAGAAGTTGATCGCGAACTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2042201..2043295+

>Gvermi11779.t1 ID=Gvermi11779.t1|Name=Gvermi11779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1095bp|location=Sequence derived from alignment at ScGOVlb_3404:2042201..2043295+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGCGCTCCACTGGCGAGGCTGTGCCGTTTACGCAACCCTTTGTTT
CTTCACGAGCATCGTTTCGGGTTCCTTTCAGCAGAGCAATGTTCCGCAAA
CCGAAGCGACGATAGCGTTTCATGTGAACGTGAGGCAATCAAACGTGGCG
TTCCTCCGACGATTTCTCTACCGCATATACCACAAAGACAACCTGTACCT
GGTCGACTATTCCCCACCACTGCAACCTGATTTATACGTAAGCGTTCTCG
ACAAGCAAAATGTATACCACAGAGCAGCGGATCCGTTTGTAGAAAACGGA
GTTTCGGAGGTTATCAATATACTAGATGGTATGGCTTTCTTTCTCGATCG
CGAGGAAAATCTCGCTGTTCCGGGCCATTCCTTTGACTACTATGTTCATT
GCACACCTGATTATTACCCCGCATTGAATCCTACTCACATGCGACAGGTT
CTCTCGGTCGAAAGCGGAACGCAACTGCCGCCCAACTTTGTTCATTTCTT
CCATGAGACGCAAGTTCCCTTCTTCGCCAGCGAGATCAACCGTGTCGTTC
TCGATCTCTCCCTCTCATTCAACCGCACCCTCCCACACACCACAAAACTG
CATCAGATGAATATCCTGCATCCCGATTACAAAAAGCGAAACATGGCGTT
TCCGCGCGCGCTGAAACGTTTTGTTGTGAATCATGCTTTTGTAGAACTTG
CTACCGACTCCATGTTATCAAAGCGCTTGCTCCTGACGCTAGGCGACACC
TCTCATGTGGATGAGCGGTTTTTCGCCGCTCTGATAGCAAACAATAAGAA
AGATATTGGCAAGGTGATACGCACAACTTCGCTGCAATGCGTCAATTCAG
TTGCAATAGATACAGCGGTTTCGCGTTCACTACCCAACTACAGTCCGCAC
CCGATAACAATAGAGTTTCTACAGGATACTGCGGAGCCGTGTCTCTTTGC
CGGCCCGTTTTCTGACGCAGATGACGCTGTTCTCACGAAGATTGACAAGG
AACTACTTATCCCTCCGGGAACCCAGGGAAAGCCTGGCGGGCTTGGATTT
CACGATCATGTATACCAAAAGTTACAGAAGTTGATCGCGAACTGA