Gvermi11769.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11769.t1
Unique Name	Gvermi11769.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2016116..2017174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5888.CAK56176
PFAMs	PP2C
Max annot lvl	5878\|Ciliophora
Evalue	1.86e-37
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota,3ZDJG@5878\|Ciliophora
Description	phosphatase 2C
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11769	Gvermi11769	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2016116..2017174 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11769.t1.start1	Gvermi11769.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2016116..2016118 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11769.t1.CDS1	Gvermi11769.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2016116..2017174 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11769.t1.exon1	Gvermi11769.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2016116..2017174 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11769.t1.stop1	Gvermi11769.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2017172..2017174 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11769.t1	Gvermi11769.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2016116..2017174 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2016116..2017174+
coding sequence from alignment at ScGOVlb_3404:2016116..2017174+

mRNA sequence

>Gvermi11769.t1 ID=Gvermi11769.t1|Name=Gvermi11769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=353bp
MSCFDLRVYLPSRLGASHSAHAPAPPRARRARRARARRAALPHEDLSASK
RRLVCIRRQEASIRLEVGFKSRTGWQLLSSSPLNQDSLAVLLPLPEPHHA
VSLFAVFDAHGRDGHRMSAFVAQHFTHQLQAALSRKRTSTATALEHACTQ
TAASVSASSLDSFMTGTTLAAAVVHQGVITCANIGDSRVVLATMRNGSLV
PIALTEDHTPEVPRERKRIESAGGRVERWTPAGLDTGPARVWLKDKRLPG
LSVSRVIGDTILSGIISSQPDITSYKVSEHDQFIIVATDGIWNVMSNQDV
VHFTAAHGDKSAQRISEALVRRAATLWFANGGETIDDISAIVIRLRWPAQ
RW*

spliced messenger RNA

>Gvermi11769.t1 ID=Gvermi11769.t1|Name=Gvermi11769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_3404:2016116..2017174+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcgtgcttcgatctgcgcgtgtacctgccctcccgcctcggcgcttc
gcactcggcgcacgcgcccgcacccccccgcgctcgacgcgcgcgacgcg
cgcgcgcgcgccgcgccgcCCTCCCCCACGAGGACCTGTCCGCCTCCAAG
CGCCGGCTCGTGTGCATCCGGCGCCAGGAGGCGTCCATCCGGCTCGAGGT
CGGCTTCAAGTCGCGCACAGGCTGGCAGCTGTTGTCCAGCTCGCCGCTCA
ACCAGGATTcgctcgccgtgctgttgccgctgccggagccgcaccacgcc
gtgtcgctgTTCGCCGTGTTTGACGCGCACGGCAGGGACGGCCACCGCAT
GTCCGCCTTCGTCGCGCAGCACTTCACGCATCAGCTGCAAGCCGCGCTGT
CGCGCAAGCGCACCTCCACCGCAACGGCGCTGGAGCACGCGTGCACCCAA
ACTGCCGCTTCCGTCAGCGCCAGCTCCCTGGACTCGTTCATGACGGGCAC
CACGCTGGCCGCTGCTGTCGTGCACCAAGGTGTCATCACGTGCGCCAACA
TTGGCGACTCGAGGGTTGTGTTGGCCACCATGCGCAACGGGTCGCTGGTG
CCCATCGCGCTCACGGAAGACCACACGCCGGAGGTGCCGCGCGAGCGCAA
ACGCATTGAGAGCGCGGGCGGCCGTGTGGAGCGGTGGACGCCCGCCGGTC
TCGACACGGGACCCGCGCGCGTGTGGCTCAAGGACAAGCGCCTGCCGGGT
CTGTCAGTGTCGCGCGTCATCGGAGACACCATTCTGTCGGGCATAATCTC
AAGCCAACCTGACATCACGTCCTACAAGGTGAGCGAGCACGATCAATTCA
TCATCGTCGCCACGGATGGCATCTGGAATGTCATGTCCAACCAAGACGTG
GTGCACTTCACCGCTGCGCACGGCGACAAGAGCGCTCAGCGCATCTCGGA
GGCGCTTGTCAGACGCGCTGCCACGCTGTGGTTTGCCAACGGCGGCGAAA
CCATTGATGATATATCAGCCATTGTCATCCGTCTTCGATGGCCGGCGCAG
CGTTGGTAG

protein sequence of Gvermi11769.t1

>Gvermi11769.t1 ID=Gvermi11769.t1|Name=Gvermi11769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=353bp
MSCFDLRVYLPSRLGASHSAHAPAPPRARRARRARARRAALPHEDLSASK
RRLVCIRRQEASIRLEVGFKSRTGWQLLSSSPLNQDSLAVLLPLPEPHHA
VSLFAVFDAHGRDGHRMSAFVAQHFTHQLQAALSRKRTSTATALEHACTQ
TAASVSASSLDSFMTGTTLAAAVVHQGVITCANIGDSRVVLATMRNGSLV
PIALTEDHTPEVPRERKRIESAGGRVERWTPAGLDTGPARVWLKDKRLPG
LSVSRVIGDTILSGIISSQPDITSYKVSEHDQFIIVATDGIWNVMSNQDV
VHFTAAHGDKSAQRISEALVRRAATLWFANGGETIDDISAIVIRLRWPAQ
RW*

mRNA from alignment at ScGOVlb_3404:2016116..2017174+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11769.t1 ID=Gvermi11769.t1|Name=Gvermi11769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_3404:2016116..2017174+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgtcgtgcttcgatctgcgcgtgtacctgccctcccgcctcggcgcttc
gcactcggcgcacgcgcccgcacccccccgcgctcgacgcgcgcgacgcg
cgcgcgcgcgccgcgccgcCCTCCCCCACGAGGACCTGTCCGCCTCCAAG
CGCCGGCTCGTGTGCATCCGGCGCCAGGAGGCGTCCATCCGGCTCGAGGT
CGGCTTCAAGTCGCGCACAGGCTGGCAGCTGTTGTCCAGCTCGCCGCTCA
ACCAGGATTcgctcgccgtgctgttgccgctgccggagccgcaccacgcc
gtgtcgctgTTCGCCGTGTTTGACGCGCACGGCAGGGACGGCCACCGCAT
GTCCGCCTTCGTCGCGCAGCACTTCACGCATCAGCTGCAAGCCGCGCTGT
CGCGCAAGCGCACCTCCACCGCAACGGCGCTGGAGCACGCGTGCACCCAA
ACTGCCGCTTCCGTCAGCGCCAGCTCCCTGGACTCGTTCATGACGGGCAC
CACGCTGGCCGCTGCTGTCGTGCACCAAGGTGTCATCACGTGCGCCAACA
TTGGCGACTCGAGGGTTGTGTTGGCCACCATGCGCAACGGGTCGCTGGTG
CCCATCGCGCTCACGGAAGACCACACGCCGGAGGTGCCGCGCGAGCGCAA
ACGCATTGAGAGCGCGGGCGGCCGTGTGGAGCGGTGGACGCCCGCCGGTC
TCGACACGGGACCCGCGCGCGTGTGGCTCAAGGACAAGCGCCTGCCGGGT
CTGTCAGTGTCGCGCGTCATCGGAGACACCATTCTGTCGGGCATAATCTC
AAGCCAACCTGACATCACGTCCTACAAGGTGAGCGAGCACGATCAATTCA
TCATCGTCGCCACGGATGGCATCTGGAATGTCATGTCCAACCAAGACGTG
GTGCACTTCACCGCTGCGCACGGCGACAAGAGCGCTCAGCGCATCTCGGA
GGCGCTTGTCAGACGCGCTGCCACGCTGTGGTTTGCCAACGGCGGCGAAA
CCATTGATGATATATCAGCCATTGTCATCCGTCTTCGATGGCCGGCGCAG
CGTTGGTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:2016116..2017174+

>Gvermi11769.t1 ID=Gvermi11769.t1|Name=Gvermi11769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1059bp|location=Sequence derived from alignment at ScGOVlb_3404:2016116..2017174+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgtcgtgcttcgatctgcgcgtgtacctgccctcccgcctcggcgcttc
gcactcggcgcacgcgcccgcacccccccgcgctcgacgcgcgcgacgcg
cgcgcgcgcgccgcgccgcCCTCCCCCACGAGGACCTGTCCGCCTCCAAG
CGCCGGCTCGTGTGCATCCGGCGCCAGGAGGCGTCCATCCGGCTCGAGGT
CGGCTTCAAGTCGCGCACAGGCTGGCAGCTGTTGTCCAGCTCGCCGCTCA
ACCAGGATTcgctcgccgtgctgttgccgctgccggagccgcaccacgcc
gtgtcgctgTTCGCCGTGTTTGACGCGCACGGCAGGGACGGCCACCGCAT
GTCCGCCTTCGTCGCGCAGCACTTCACGCATCAGCTGCAAGCCGCGCTGT
CGCGCAAGCGCACCTCCACCGCAACGGCGCTGGAGCACGCGTGCACCCAA
ACTGCCGCTTCCGTCAGCGCCAGCTCCCTGGACTCGTTCATGACGGGCAC
CACGCTGGCCGCTGCTGTCGTGCACCAAGGTGTCATCACGTGCGCCAACA
TTGGCGACTCGAGGGTTGTGTTGGCCACCATGCGCAACGGGTCGCTGGTG
CCCATCGCGCTCACGGAAGACCACACGCCGGAGGTGCCGCGCGAGCGCAA
ACGCATTGAGAGCGCGGGCGGCCGTGTGGAGCGGTGGACGCCCGCCGGTC
TCGACACGGGACCCGCGCGCGTGTGGCTCAAGGACAAGCGCCTGCCGGGT
CTGTCAGTGTCGCGCGTCATCGGAGACACCATTCTGTCGGGCATAATCTC
AAGCCAACCTGACATCACGTCCTACAAGGTGAGCGAGCACGATCAATTCA
TCATCGTCGCCACGGATGGCATCTGGAATGTCATGTCCAACCAAGACGTG
GTGCACTTCACCGCTGCGCACGGCGACAAGAGCGCTCAGCGCATCTCGGA
GGCGCTTGTCAGACGCGCTGCCACGCTGTGGTTTGCCAACGGCGGCGAAA
CCATTGATGATATATCAGCCATTGTCATCCGTCTTCGATGGCCGGCGCAG
CGTTGGTAG