Gvermi11766.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11766.t1
Unique NameGvermi11766.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1998729..1999946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF118CT
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue4.25e-86
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11766Gvermi11766Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1998729..1999946 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11766.t1.stop1Gvermi11766.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1998729..1998731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11766.t1.CDS1Gvermi11766.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1998729..1999946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11766.t1.exon1Gvermi11766.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1998729..1999946 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11766.t1.start1Gvermi11766.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1999944..1999946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11766.t1Gvermi11766.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1998729..1999946 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11766.t1 ID=Gvermi11766.t1|Name=Gvermi11766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp
MGSCLSKPSAPREPSNHPSRWKVTTSNLLPSCEPIRLLGEGTFGTVVLVR
ERSTKQLFALKVMNKSQLVYESQMDNIVTERQVLREAGPHPFIVECHSGF
QTPQAVVLVLEYVSGGDMYDLLRMHGCLTEEQARFYLAEITVAISELHSH
DFIFRDLKLENILIDESGHVRLTDFGLAGKFQSGEASEKATFDISGTAIY
QAPEMIKGEGHGRVVDWWALGVLAYVLLAGRPPFSSESREELTKKIAEEQ
LDLENDERLVEVSDTCKDFIRRLLDKNPATRLGHTGADASDVQNHPFFAG
IDWNGVENFKLIPPLKPALEPSTEPNNPQDIKQAHKSLADKVMRKHKSEG
GMLDEGEYKLIHVNKFPTSNRVSIGLDFSGRNKQQRGRTWTGTIDDFGRE
IASAQ*
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spliced messenger RNA

>Gvermi11766.t1 ID=Gvermi11766.t1|Name=Gvermi11766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3404:1998729..1999946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCTTGCCTCTCCAAGCCCTCCGCACCCCGCGAGCCTTCCAATCA
CCCTTCCCGCTGGAAAGTCACCACTTCGAACCTTTTGCCATCATGCGAAC
CCATTCGCCTGCTCGGGGAAGGCACATTTGGAACAGTGGTGCTCGTGCGA
GAGCGCAGCACTAAGCAGCTCTTTGCCCTTAAGGTCATGAACAAATCACA
ACTGGTTTATGAGAGTCAGATGGATAACATTGTCACCGAGCGTCAAGTCC
TGCGAGAGGCTGGCCCTCACCCGTTCATCGTCGAATGTCATTCCGGCTTC
CAAACCCCCCAGGCCGTCGTTCTTGTGCTCGAATACGTCAGCGGCGGTGA
CATGTACGATCTGCTCAGAATGCATGGCTGCCTCACCGAAGAACAAGCGC
GCTTTTATCTTGCCGAGATTACCGTGGCCATTTCGGAGCTTCACAGCCAT
GATTTCATCTTTAGAGACCTAAAGCTGGAGAATATCCTCATCGACGAGAG
CGGCCATGTACGCCTCACCGACTTTGGTCTGGCAGGCAAGTTCCAATCTG
GAGAAGCAAGTGAAAAGGCCACTTTCGATATATCGGGAACTGCCATTTAC
CAGGCGCCGGAAATGATCAAGGGTGAAGGACATGGCCGCGTCGTTGACTG
GTGGGCTCTTGGTGTTCTGGCGTACGTGCTTCTGGCAGGTCGACCTCCGT
TTTCCAGCGAGTCGCGAGAGGAACTGACGAAAAAGATTGCAGAAGAACAA
CTGGACCTTGAAAACGATGAAAGGCTGGTCGAAGTTTCAGACACGTGCAA
GGACTTCATAAGACGTTTGCTGGACAAAAATCCCGCCACGAGGCTTGGTC
ATACAGGAGCTGACGCTAGCGACGTACAGAACCACCCCTTCTTTGCTGGT
ATTGACTGGAACGGCGTCGAAAATTTCAAGCTTATTCCTCCGCTGAAACC
GGCGCTCGAACCGTCAACGGAGCCGAATAATCCGCAAGACATCAAGCAAG
CCCACAAGAGCTTAGCCGACAAGGTAATGAGAAAACACAAGAGTGAGGGA
GGGATGCTGGATGAGGGTGAGTATAAACTTATTCACGTGAATAAGTTTCC
GACCTCAAATCGGGTGAGTATTGGGCTTGACTTTTCGGGGAGAAACAAGC
AGCAGCGGGGTAGAACGTGGACGGGCACTATTGATGACTTTGGACGAGAG
ATAGCTAGCGCTCAGTAG
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protein sequence of Gvermi11766.t1

>Gvermi11766.t1 ID=Gvermi11766.t1|Name=Gvermi11766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
MGSCLSKPSAPREPSNHPSRWKVTTSNLLPSCEPIRLLGEGTFGTVVLVR
ERSTKQLFALKVMNKSQLVYESQMDNIVTERQVLREAGPHPFIVECHSGF
QTPQAVVLVLEYVSGGDMYDLLRMHGCLTEEQARFYLAEITVAISELHSH
DFIFRDLKLENILIDESGHVRLTDFGLAGKFQSGEASEKATFDISGTAIY
QAPEMIKGEGHGRVVDWWALGVLAYVLLAGRPPFSSESREELTKKIAEEQ
LDLENDERLVEVSDTCKDFIRRLLDKNPATRLGHTGADASDVQNHPFFAG
IDWNGVENFKLIPPLKPALEPSTEPNNPQDIKQAHKSLADKVMRKHKSEG
GMLDEGEYKLIHVNKFPTSNRVSIGLDFSGRNKQQRGRTWTGTIDDFGRE
IASAQ*
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mRNA from alignment at ScGOVlb_3404:1998729..1999946-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11766.t1 ID=Gvermi11766.t1|Name=Gvermi11766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3404:1998729..1999946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCTTGCCTCTCCAAGCCCTCCGCACCCCGCGAGCCTTCCAATCA
CCCTTCCCGCTGGAAAGTCACCACTTCGAACCTTTTGCCATCATGCGAAC
CCATTCGCCTGCTCGGGGAAGGCACATTTGGAACAGTGGTGCTCGTGCGA
GAGCGCAGCACTAAGCAGCTCTTTGCCCTTAAGGTCATGAACAAATCACA
ACTGGTTTATGAGAGTCAGATGGATAACATTGTCACCGAGCGTCAAGTCC
TGCGAGAGGCTGGCCCTCACCCGTTCATCGTCGAATGTCATTCCGGCTTC
CAAACCCCCCAGGCCGTCGTTCTTGTGCTCGAATACGTCAGCGGCGGTGA
CATGTACGATCTGCTCAGAATGCATGGCTGCCTCACCGAAGAACAAGCGC
GCTTTTATCTTGCCGAGATTACCGTGGCCATTTCGGAGCTTCACAGCCAT
GATTTCATCTTTAGAGACCTAAAGCTGGAGAATATCCTCATCGACGAGAG
CGGCCATGTACGCCTCACCGACTTTGGTCTGGCAGGCAAGTTCCAATCTG
GAGAAGCAAGTGAAAAGGCCACTTTCGATATATCGGGAACTGCCATTTAC
CAGGCGCCGGAAATGATCAAGGGTGAAGGACATGGCCGCGTCGTTGACTG
GTGGGCTCTTGGTGTTCTGGCGTACGTGCTTCTGGCAGGTCGACCTCCGT
TTTCCAGCGAGTCGCGAGAGGAACTGACGAAAAAGATTGCAGAAGAACAA
CTGGACCTTGAAAACGATGAAAGGCTGGTCGAAGTTTCAGACACGTGCAA
GGACTTCATAAGACGTTTGCTGGACAAAAATCCCGCCACGAGGCTTGGTC
ATACAGGAGCTGACGCTAGCGACGTACAGAACCACCCCTTCTTTGCTGGT
ATTGACTGGAACGGCGTCGAAAATTTCAAGCTTATTCCTCCGCTGAAACC
GGCGCTCGAACCGTCAACGGAGCCGAATAATCCGCAAGACATCAAGCAAG
CCCACAAGAGCTTAGCCGACAAGGTAATGAGAAAACACAAGAGTGAGGGA
GGGATGCTGGATGAGGGTGAGTATAAACTTATTCACGTGAATAAGTTTCC
GACCTCAAATCGGGTGAGTATTGGGCTTGACTTTTCGGGGAGAAACAAGC
AGCAGCGGGGTAGAACGTGGACGGGCACTATTGATGACTTTGGACGAGAG
ATAGCTAGCGCTCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1998729..1999946-

>Gvermi11766.t1 ID=Gvermi11766.t1|Name=Gvermi11766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3404:1998729..1999946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCTTGCCTCTCCAAGCCCTCCGCACCCCGCGAGCCTTCCAATCA
CCCTTCCCGCTGGAAAGTCACCACTTCGAACCTTTTGCCATCATGCGAAC
CCATTCGCCTGCTCGGGGAAGGCACATTTGGAACAGTGGTGCTCGTGCGA
GAGCGCAGCACTAAGCAGCTCTTTGCCCTTAAGGTCATGAACAAATCACA
ACTGGTTTATGAGAGTCAGATGGATAACATTGTCACCGAGCGTCAAGTCC
TGCGAGAGGCTGGCCCTCACCCGTTCATCGTCGAATGTCATTCCGGCTTC
CAAACCCCCCAGGCCGTCGTTCTTGTGCTCGAATACGTCAGCGGCGGTGA
CATGTACGATCTGCTCAGAATGCATGGCTGCCTCACCGAAGAACAAGCGC
GCTTTTATCTTGCCGAGATTACCGTGGCCATTTCGGAGCTTCACAGCCAT
GATTTCATCTTTAGAGACCTAAAGCTGGAGAATATCCTCATCGACGAGAG
CGGCCATGTACGCCTCACCGACTTTGGTCTGGCAGGCAAGTTCCAATCTG
GAGAAGCAAGTGAAAAGGCCACTTTCGATATATCGGGAACTGCCATTTAC
CAGGCGCCGGAAATGATCAAGGGTGAAGGACATGGCCGCGTCGTTGACTG
GTGGGCTCTTGGTGTTCTGGCGTACGTGCTTCTGGCAGGTCGACCTCCGT
TTTCCAGCGAGTCGCGAGAGGAACTGACGAAAAAGATTGCAGAAGAACAA
CTGGACCTTGAAAACGATGAAAGGCTGGTCGAAGTTTCAGACACGTGCAA
GGACTTCATAAGACGTTTGCTGGACAAAAATCCCGCCACGAGGCTTGGTC
ATACAGGAGCTGACGCTAGCGACGTACAGAACCACCCCTTCTTTGCTGGT
ATTGACTGGAACGGCGTCGAAAATTTCAAGCTTATTCCTCCGCTGAAACC
GGCGCTCGAACCGTCAACGGAGCCGAATAATCCGCAAGACATCAAGCAAG
CCCACAAGAGCTTAGCCGACAAGGTAATGAGAAAACACAAGAGTGAGGGA
GGGATGCTGGATGAGGGTGAGTATAAACTTATTCACGTGAATAAGTTTCC
GACCTCAAATCGGGTGAGTATTGGGCTTGACTTTTCGGGGAGAAACAAGC
AGCAGCGGGGTAGAACGTGGACGGGCACTATTGATGACTTTGGACGAGAG
ATAGCTAGCGCTCAGTAG
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