Gvermi11763.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11763.t1
Unique NameGvermi11763.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1991498..1992493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705382.1
Preferred namePSMB7
PFAMsPr_beta_C,Proteasome
Max annot lvl2759|Eukaryota
KEGG rclassRC00797
KEGG koko:K02733,ko:K02739,ko:K15402,ko:K18624
KEGG ReactionR09454
KEGG Pathwayko00073,ko03050,map00073,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006959,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0009056,GO:0009057,GO:0009653,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042098,GO:0042110,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046649,GO:0046651,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070661,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0098827,GO:0099503,GO:0101002,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2001252
Evalue1.89e-121
EggNOG OGsCOG0638@1|root,KOG0173@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko01002,ko03051,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11763Gvermi11763Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1991498..1992493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11763.t1Gvermi11763.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1991498..1992493 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11763.t1.stop1Gvermi11763.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1991498..1991500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11763.t1.CDS1Gvermi11763.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1991498..1991868 -
Gvermi11763.t1.CDS2Gvermi11763.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1991973..1992355 -
Gvermi11763.t1.CDS3Gvermi11763.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1992420..1992493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11763.t1.exon1Gvermi11763.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1991498..1991868 -
Gvermi11763.t1.exon2Gvermi11763.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1991973..1992355 -
Gvermi11763.t1.exon3Gvermi11763.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1992420..1992493 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11763.t1.intron1Gvermi11763.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1991869..1991972 -
Gvermi11763.t1.intron2Gvermi11763.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1992356..1992419 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11763.t1.start1Gvermi11763.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1992491..1992493 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11763.t1 ID=Gvermi11763.t1|Name=Gvermi11763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=276bp
MNTPQSARGGFCFENAVRNSLLSTKGYKPPAARKTGTTIAGVVFEGGVVL
GADTRATAGATVFEKNCTKIHYIADNIMCCGAGTAADTEHTTQLIASKIW
LHSLATRRKPRVATALNMLKHMLFRYQGHVSAALVLGGVDFHGPHLYTVY
PHGSTDRLPYVSMGSGSLAAMAIFESKYKDDMTVEEAKQLVYEGISGGIF
NDLGSGGNVDLCIITAEGKELIRGYAKENERKYRRPAGYPFPKGTTPVVA
GSETFKERSKVFALVTEQDGMDVSA*
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spliced messenger RNA

>Gvermi11763.t1 ID=Gvermi11763.t1|Name=Gvermi11763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:1991498..1992493- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACGCCTCAGTCCGCGAGGGGCGGCTTTTGTTTTGAAAATGCAGT
TCGCAACTCCCTTCTGTCCACCAAGGGCTACAAGCCGCCGGCAGCCCGCA
AAACCGGCACCACCATTGCAGGCGTTGTTTTCGAGGGCGGCGTGGTGCTC
GGCGCCGACACGCGAGCCACGGCCGGGGCCACCGTATTTGAGAAGAACTG
CACCAAGATCCACTACATCGCGGACAACATCATGTGCTGCGGCGCGGGCA
CGGCCGCGGACACCGAACACACAACCCAGCTCATTGCGTCCAAGATCTGG
CTCCACTCCCTGGCCACTCGCCGCAAGCCGCGCGTTGCCACTGCGTTGAA
CATGCTCAAGCACATGCTTTTCAGATACCAGGGCCATGTGTCAGCCGCCT
TGGTGCTGGGCGGCGTTGACTTTCACGGACCGCATCTATACACTGTCTAT
CCGCACGGAAGCACCGATCGGTTGCCGTACGTATCGATGGGCTCCGGATC
TTTGGCCGCCATGGCTATCTTCGAGTCAAAGTACAAGGACGACATGACTG
TTGAAGAAGCAAAGCAACTGGTATATGAAGGTATTTCGGGTGGTATATTT
AATGACTTGGGTTCTGGTGGAAACGTTGACCTTTGTATCATTACTGCAGA
GGGCAAGGAGCTCATTCGCGGCTACGCCAAGGAAAATGAAAGGAAGTATC
GCCGTCCTGCGGGATATCCATTCCCCAAAGGCACAACCCCTGTTGTTGCT
GGCTCTGAAACTTTTAAGGAACGATCAAAAGTATTTGCGCTTGTTACCGA
GCAGGATGGTATGGATGTATCGGCATAG
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protein sequence of Gvermi11763.t1

>Gvermi11763.t1 ID=Gvermi11763.t1|Name=Gvermi11763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=276bp
MNTPQSARGGFCFENAVRNSLLSTKGYKPPAARKTGTTIAGVVFEGGVVL
GADTRATAGATVFEKNCTKIHYIADNIMCCGAGTAADTEHTTQLIASKIW
LHSLATRRKPRVATALNMLKHMLFRYQGHVSAALVLGGVDFHGPHLYTVY
PHGSTDRLPYVSMGSGSLAAMAIFESKYKDDMTVEEAKQLVYEGISGGIF
NDLGSGGNVDLCIITAEGKELIRGYAKENERKYRRPAGYPFPKGTTPVVA
GSETFKERSKVFALVTEQDGMDVSA*
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mRNA from alignment at ScGOVlb_3404:1991498..1992493-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11763.t1 ID=Gvermi11763.t1|Name=Gvermi11763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=996bp|location=Sequence derived from alignment at ScGOVlb_3404:1991498..1992493- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACGCCTCAGTCCGCGAGGGGCGGCTTTTGTTTTGAAAATGCAGT
TCGCAACTCCCTTCTGTCCACCAAGTAAGTTCGACGCGCTGCAGCACGAC
CGATCCGCGCTCGCGCACCAATGCTGACCCGATCCCAGGGGCTACAAGCC
GCCGGCAGCCCGCAAAACCGGCACCACCATTGCAGGCGTTGTTTTCGAGG
GCGGCGTGGTGCTCGGCGCCGACACGCGAGCCACGGCCGGGGCCACCGTA
TTTGAGAAGAACTGCACCAAGATCCACTACATCGCGGACAACATCATGTG
CTGCGGCGCGGGCACGGCCGCGGACACCGAACACACAACCCAGCTCATTG
CGTCCAAGATCTGGCTCCACTCCCTGGCCACTCGCCGCAAGCCGCGCGTT
GCCACTGCGTTGAACATGCTCAAGCACATGCTTTTCAGATACCAGGGCCA
TGTGTCAGCCGCCTTGGTGCTGGGCGGCGTTGACTTTCACGGACCGCATC
TATACACTGTCTATCCGCACGGTACGTTTTTCCCTTTTGTTTCCGTCCAC
AGACGTACCCTCAGAACGGCCACAGCGAGCACAAGATGTTAACACATGAA
CTGGTTCGCAACTCTGTCGTCACAGGAAGCACCGATCGGTTGCCGTACGT
ATCGATGGGCTCCGGATCTTTGGCCGCCATGGCTATCTTCGAGTCAAAGT
ACAAGGACGACATGACTGTTGAAGAAGCAAAGCAACTGGTATATGAAGGT
ATTTCGGGTGGTATATTTAATGACTTGGGTTCTGGTGGAAACGTTGACCT
TTGTATCATTACTGCAGAGGGCAAGGAGCTCATTCGCGGCTACGCCAAGG
AAAATGAAAGGAAGTATCGCCGTCCTGCGGGATATCCATTCCCCAAAGGC
ACAACCCCTGTTGTTGCTGGCTCTGAAACTTTTAAGGAACGATCAAAAGT
ATTTGCGCTTGTTACCGAGCAGGATGGTATGGATGTATCGGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1991498..1992493-

>Gvermi11763.t1 ID=Gvermi11763.t1|Name=Gvermi11763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:1991498..1992493- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACGCCTCAGTCCGCGAGGGGCGGCTTTTGTTTTGAAAATGCAGT
TCGCAACTCCCTTCTGTCCACCAAGGGCTACAAGCCGCCGGCAGCCCGCA
AAACCGGCACCACCATTGCAGGCGTTGTTTTCGAGGGCGGCGTGGTGCTC
GGCGCCGACACGCGAGCCACGGCCGGGGCCACCGTATTTGAGAAGAACTG
CACCAAGATCCACTACATCGCGGACAACATCATGTGCTGCGGCGCGGGCA
CGGCCGCGGACACCGAACACACAACCCAGCTCATTGCGTCCAAGATCTGG
CTCCACTCCCTGGCCACTCGCCGCAAGCCGCGCGTTGCCACTGCGTTGAA
CATGCTCAAGCACATGCTTTTCAGATACCAGGGCCATGTGTCAGCCGCCT
TGGTGCTGGGCGGCGTTGACTTTCACGGACCGCATCTATACACTGTCTAT
CCGCACGGAAGCACCGATCGGTTGCCGTACGTATCGATGGGCTCCGGATC
TTTGGCCGCCATGGCTATCTTCGAGTCAAAGTACAAGGACGACATGACTG
TTGAAGAAGCAAAGCAACTGGTATATGAAGGTATTTCGGGTGGTATATTT
AATGACTTGGGTTCTGGTGGAAACGTTGACCTTTGTATCATTACTGCAGA
GGGCAAGGAGCTCATTCGCGGCTACGCCAAGGAAAATGAAAGGAAGTATC
GCCGTCCTGCGGGATATCCATTCCCCAAAGGCACAACCCCTGTTGTTGCT
GGCTCTGAAACTTTTAAGGAACGATCAAAAGTATTTGCGCTTGTTACCGA
GCAGGATGGTATGGATGTATCGGCATAG
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