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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4098.XP_009621357.1 |
| PFAMs | COG4,PPR,PPR_2,RINT1_TIP1 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K20291 |
| GOs | GO:0000301,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010256,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016788,GO:0017119,GO:0022607,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048193,GO:0048213,GO:0051179,GO:0051234,GO:0065003,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0099023,GO:1901360,GO:1901363 |
| Evalue | 9.25e-71 |
| EggNOG OGs | KOG0412@1|root,KOG0412@2759|Eukaryota,37KBZ@33090|Viridiplantae,3GB2Q@35493|Streptophyta,44E03@71274|asterids |
| Description | COG4 transport protein |
| COG category | U |
| BRITE | ko00000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11762.t1 ID=Gvermi11762.t1|Name=Gvermi11762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=821bp MMIRGPDHQVEGEYGAVSDRWLVGAMHFSLTPDPACPASVFATRDDMPAP AQEVPITALETLSSITQALQDAILSSEQTEASLDEQLTISAQRAAERSQV LDTASKFSTAVTKETQELASLLESAVRKSDSACASIRSLDLLLTRTNKAL SWADDILTLRVCAEGAKTSLSADDLASAARHVQTYLTLGDAIRADSASAT AVSQIEQSRAELSRKVRNATEQKLKAELSTADAIGAVQLFVPIGQADEGL AKLCEHLKARLARESDGDVRELLLNSTTEAVGAEEPHIVAVARLFESVAA IVHDGRASLLNLFGTSSVTVVLESLQEQCDSSLNRILDRYEEAKRLDEVM RALRSESTNARELDGLLNELTLMSQRMAGYIDFLVGKRVPASADGATGEA HDELKAEYRKVEKMLEKTALYKRKRDLAGFYNTIESYFMRENARLAIKID ESNGEDAETSTVVDDFFFVLQKCFQRAFAYGDTDPEVLRLVLNQVSLCLM NDLIPYMRRRLRETEAALEKLFGGAGAASALPAAALTVSYLTELAKANIS IPGGGDMSSNSADVAKYDFFVALNNTSVSADYASRLRSNVEKAVHASPRL SVDDRTLVVAPLTNINDASRTLLQASEHGVGRLASVLLDRITFVVQKSLR QASYMVSEAQYSLDSDATPSFSREVANQLESKVLSPSLEKRLTEKNWDAL VRQVAEWYAQQVEGLVFLPPTSNAVDSKSFTAFGGLRADRDVRAISSYFS NKSRRSTVRDVFGRLSQLAMLVNLERPAEVYDVWGPNAGGMTWRLTTGEV RRALSLRSDFNKDAIKSLKL* back to topspliced messenger RNA >Gvermi11762.t1 ID=Gvermi11762.t1|Name=Gvermi11762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2463bp|location=Sequence derived from alignment at ScGOVlb_3404:1988621..1991150+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGATGATTCGCGGTCCGGATCATCAAGTCGAGGGCGAGTACGGGGCCGT CTCTGATCGCTGGCTGGTAGGCGCGATGCACTTCTCCCTCACCCCTGACC CAGCCTGTCCTGCAAGTGTGTTTGCAACCAGGGACGATATGCCGGCTCCG GCCCAAGAAGTTCCGATCACTGCTCTCGAAACACTCTCTTCTATAACCCA GGCGCTGCAGGATGCGATCTTATCATCGGAGCAGACGGAGGCTTCTCTTG ATGAACAACTTACCATCTCAGCGCAGAGAGCTGCGGAGAGGTCGCAGGTT TTGGACACAGCCTCAAAGTTCTCGACCGCAGTGACAAAAGAGACTCAAGA GCTGGCTTCTCTTCTTGAATCCGCAGTGCGCAAGTCCGACTCAGCATGCG CGAGTATTCGCAGTCTGGACTTACTTCTCACTCGCACGAACAAGGCATTG TCGTGGGCCGACGATATTCTAACTCTAAGGGTTTGCGCGGAAGGAGCCAA GACAAGCCTTAGCGCGGACGACCTCGCAAGTGCTGCCCGCCATGTACAGA CGTATCTTACCCTGGGCGATGCAATTCGAGCAGACTCTGCCTCTGCGACA GCCGTCTCTCAAATCGAGCAATCACGCGCAGAACTATCTCGAAAAGTTCG CAATGCAACCGAACAGAAACTCAAAGCAGAGCTTTCCACGGCAGACGCCA TCGGCGCCGTGCAGCTCTTCGTACCTATTGGACAAGCGGATGAAGGTCTG GCAAAGCTTTGTGAGCACCTCAAGGCACGACTTGCCCGCGAGAGCGATGG TGATGTGAGAGAATTACTGCTCAACTCAACAACAGAAGCTGTGGGGGCTG AGGAGCCGCACATCGTTGCTGTCGCCCGGCTCTTTGAAAGCGTTGCTGCA ATCGTACATGACGGAAGGGCGAGCCTTTTGAATCTGTTCGGGACTTCGTC TGTAACAGTTGTTCTTGAAAGTCTTCAAGAGCAATGTGATTCAAGTCTGA ATCGCATCCTTGATCGGTACGAAGAAGCCAAACGCCTGGATGAAGTCATG CGAGCATTGCGCTCGGAATCAACAAACGCAAGAGAGTTAGATGGCCTTCT CAATGAGCTTACATTGATGAGTCAAAGAATGGCGGGATATATCGACTTCC TTGTCGGTAAAAGAGTGCCAGCTTCTGCCGACGGGGCAACAGGAGAGGCA CATGATGAATTAAAAGCGGAATACCGCAAGGTCGAGAAGATGTTGGAAAA GACGGCACTGTATAAGAGAAAACGTGATCTGGCTGGATTCTACAACACCA TTGAATCATATTTTATGAGAGAGAATGCGAGGCTGGCGATCAAGATTGAC GAGAGTAACGGGGAGGATGCCGAGACTTCAACTGTTGTTGACGACTTCTT CTTCGTTTTGCAAAAGTGTTTCCAAAGAGCATTCGCCTACGGTGACACTG ATCCCGAGGTGCTGCGTTTGGTTCTAAATCAGGTCAGTCTTTGCCTCATG AATGATCTGATCCCCTACATGAGGCGAAGGCTTAGAGAAACTGAAGCAGC GCTGGAGAAGCTGTTTGGCGGTGCGGGGGCTGCTTCTGCTCTCCCAGCTG CAGCTTTGACAGTGTCATATCTCACAGAACTTGCGAAGGCAAACATTAGC ATACCAGGTGGGGGCGACATGTCGTCCAACAGTGCTGACGTCGCAAAGTA CGACTTTTTTGTAGCCCTCAACAACACTTCCGTTTCCGCAGATTATGCGA GTCGTCTCCGCAGCAACGTCGAGAAGGCAGTTCATGCATCGCCGAGGCTT TCAGTCGATGACAGAACTCTTGTGGTTGCACCTCTGACCAATATAAATGA CGCATCCCGCACACTTTTACAGGCGTCGGAACACGGGGTTGGCCGGTTGG CTTCTGTTTTATTGGACAGGATAACGTTTGTAGTGCAAAAATCACTGAGA CAGGCGTCGTATATGGTTTCAGAAGCTCAATACTCTCTCGATTCCGATGC GACTCCATCATTTTCGCGCGAGGTTGCCAATCAATTAGAGAGCAAAGTTC TGAGCCCTTCTCTCGAAAAGCGCCTCACGGAAAAGAACTGGGACGCACTC GTGCGACAGGTCGCCGAGTGGTACGCGCAACAAGTGGAGGGTCTTGTGTT TCTGCCGCCCACTTCGAACGCTGTGGATTCCAAATCGTTCACCGCGTTTG GGGGGTTGCGAGCAGATAGAGACGTGAGGGCCATCTCATCGTATTTCTCG AACAAGAGTCGACGAAGCACAGTGAGGGATGTGTTTGGAAGACTATCACA ACTGGCAATGCTGGTCAATCTTGAACGACCTGCCGAAGTCTATGACGTCT GGGGACCTAATGCGGGTGGAATGACATGGAGATTGACAACGGGTGAAGTG AGACGAGCACTGTCATTGCGCTCCGATTTCAATAAGGATGCAATCAAGTC TCTTAAGCTTTAG back to topprotein sequence of Gvermi11762.t1 >Gvermi11762.t1 ID=Gvermi11762.t1|Name=Gvermi11762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=821bp
MMIRGPDHQVEGEYGAVSDRWLVGAMHFSLTPDPACPASVFATRDDMPAP AQEVPITALETLSSITQALQDAILSSEQTEASLDEQLTISAQRAAERSQV LDTASKFSTAVTKETQELASLLESAVRKSDSACASIRSLDLLLTRTNKAL SWADDILTLRVCAEGAKTSLSADDLASAARHVQTYLTLGDAIRADSASAT AVSQIEQSRAELSRKVRNATEQKLKAELSTADAIGAVQLFVPIGQADEGL AKLCEHLKARLARESDGDVRELLLNSTTEAVGAEEPHIVAVARLFESVAA IVHDGRASLLNLFGTSSVTVVLESLQEQCDSSLNRILDRYEEAKRLDEVM RALRSESTNARELDGLLNELTLMSQRMAGYIDFLVGKRVPASADGATGEA HDELKAEYRKVEKMLEKTALYKRKRDLAGFYNTIESYFMRENARLAIKID ESNGEDAETSTVVDDFFFVLQKCFQRAFAYGDTDPEVLRLVLNQVSLCLM NDLIPYMRRRLRETEAALEKLFGGAGAASALPAAALTVSYLTELAKANIS IPGGGDMSSNSADVAKYDFFVALNNTSVSADYASRLRSNVEKAVHASPRL SVDDRTLVVAPLTNINDASRTLLQASEHGVGRLASVLLDRITFVVQKSLR QASYMVSEAQYSLDSDATPSFSREVANQLESKVLSPSLEKRLTEKNWDAL VRQVAEWYAQQVEGLVFLPPTSNAVDSKSFTAFGGLRADRDVRAISSYFS NKSRRSTVRDVFGRLSQLAMLVNLERPAEVYDVWGPNAGGMTWRLTTGEV RRALSLRSDFNKDAIKSLKL* back to topmRNA from alignment at ScGOVlb_3404:1988621..1991150+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11762.t1 ID=Gvermi11762.t1|Name=Gvermi11762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2530bp|location=Sequence derived from alignment at ScGOVlb_3404:1988621..1991150+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGATGATTCGCGGTCCGGATCATCAAGTCGAGGGCGAGTACGGGGCCGT
CTCTGATCGCTGGCTGGTAGGCGCGATGCACTGTAGAACGGCTCTATTTT
GCATGTGCATACTACACAAAAGTCACGAACAATGCGGAGTGTCAGTCAGT
CTCCCTCACCCCTGACCCAGCCTGTCCTGCAAGTGTGTTTGCAACCAGGG
ACGATATGCCGGCTCCGGCCCAAGAAGTTCCGATCACTGCTCTCGAAACA
CTCTCTTCTATAACCCAGGCGCTGCAGGATGCGATCTTATCATCGGAGCA
GACGGAGGCTTCTCTTGATGAACAACTTACCATCTCAGCGCAGAGAGCTG
CGGAGAGGTCGCAGGTTTTGGACACAGCCTCAAAGTTCTCGACCGCAGTG
ACAAAAGAGACTCAAGAGCTGGCTTCTCTTCTTGAATCCGCAGTGCGCAA
GTCCGACTCAGCATGCGCGAGTATTCGCAGTCTGGACTTACTTCTCACTC
GCACGAACAAGGCATTGTCGTGGGCCGACGATATTCTAACTCTAAGGGTT
TGCGCGGAAGGAGCCAAGACAAGCCTTAGCGCGGACGACCTCGCAAGTGC
TGCCCGCCATGTACAGACGTATCTTACCCTGGGCGATGCAATTCGAGCAG
ACTCTGCCTCTGCGACAGCCGTCTCTCAAATCGAGCAATCACGCGCAGAA
CTATCTCGAAAAGTTCGCAATGCAACCGAACAGAAACTCAAAGCAGAGCT
TTCCACGGCAGACGCCATCGGCGCCGTGCAGCTCTTCGTACCTATTGGAC
AAGCGGATGAAGGTCTGGCAAAGCTTTGTGAGCACCTCAAGGCACGACTT
GCCCGCGAGAGCGATGGTGATGTGAGAGAATTACTGCTCAACTCAACAAC
AGAAGCTGTGGGGGCTGAGGAGCCGCACATCGTTGCTGTCGCCCGGCTCT
TTGAAAGCGTTGCTGCAATCGTACATGACGGAAGGGCGAGCCTTTTGAAT
CTGTTCGGGACTTCGTCTGTAACAGTTGTTCTTGAAAGTCTTCAAGAGCA
ATGTGATTCAAGTCTGAATCGCATCCTTGATCGGTACGAAGAAGCCAAAC
GCCTGGATGAAGTCATGCGAGCATTGCGCTCGGAATCAACAAACGCAAGA
GAGTTAGATGGCCTTCTCAATGAGCTTACATTGATGAGTCAAAGAATGGC
GGGATATATCGACTTCCTTGTCGGTAAAAGAGTGCCAGCTTCTGCCGACG
GGGCAACAGGAGAGGCACATGATGAATTAAAAGCGGAATACCGCAAGGTC
GAGAAGATGTTGGAAAAGACGGCACTGTATAAGAGAAAACGTGATCTGGC
TGGATTCTACAACACCATTGAATCATATTTTATGAGAGAGAATGCGAGGC
TGGCGATCAAGATTGACGAGAGTAACGGGGAGGATGCCGAGACTTCAACT
GTTGTTGACGACTTCTTCTTCGTTTTGCAAAAGTGTTTCCAAAGAGCATT
CGCCTACGGTGACACTGATCCCGAGGTGCTGCGTTTGGTTCTAAATCAGG
TCAGTCTTTGCCTCATGAATGATCTGATCCCCTACATGAGGCGAAGGCTT
AGAGAAACTGAAGCAGCGCTGGAGAAGCTGTTTGGCGGTGCGGGGGCTGC
TTCTGCTCTCCCAGCTGCAGCTTTGACAGTGTCATATCTCACAGAACTTG
CGAAGGCAAACATTAGCATACCAGGTGGGGGCGACATGTCGTCCAACAGT
GCTGACGTCGCAAAGTACGACTTTTTTGTAGCCCTCAACAACACTTCCGT
TTCCGCAGATTATGCGAGTCGTCTCCGCAGCAACGTCGAGAAGGCAGTTC
ATGCATCGCCGAGGCTTTCAGTCGATGACAGAACTCTTGTGGTTGCACCT
CTGACCAATATAAATGACGCATCCCGCACACTTTTACAGGCGTCGGAACA
CGGGGTTGGCCGGTTGGCTTCTGTTTTATTGGACAGGATAACGTTTGTAG
TGCAAAAATCACTGAGACAGGCGTCGTATATGGTTTCAGAAGCTCAATAC
TCTCTCGATTCCGATGCGACTCCATCATTTTCGCGCGAGGTTGCCAATCA
ATTAGAGAGCAAAGTTCTGAGCCCTTCTCTCGAAAAGCGCCTCACGGAAA
AGAACTGGGACGCACTCGTGCGACAGGTCGCCGAGTGGTACGCGCAACAA
GTGGAGGGTCTTGTGTTTCTGCCGCCCACTTCGAACGCTGTGGATTCCAA
ATCGTTCACCGCGTTTGGGGGGTTGCGAGCAGATAGAGACGTGAGGGCCA
TCTCATCGTATTTCTCGAACAAGAGTCGACGAAGCACAGTGAGGGATGTG
TTTGGAAGACTATCACAACTGGCAATGCTGGTCAATCTTGAACGACCTGC
CGAAGTCTATGACGTCTGGGGACCTAATGCGGGTGGAATGACATGGAGAT
TGACAACGGGTGAAGTGAGACGAGCACTGTCATTGCGCTCCGATTTCAAT
AAGGATGCAATCAAGTCTCTTAAGCTTTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:1988621..1991150+ >Gvermi11762.t1 ID=Gvermi11762.t1|Name=Gvermi11762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2463bp|location=Sequence derived from alignment at ScGOVlb_3404:1988621..1991150+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGATGATTCGCGGTCCGGATCATCAAGTCGAGGGCGAGTACGGGGCCGT CTCTGATCGCTGGCTGGTAGGCGCGATGCACTTCTCCCTCACCCCTGACC CAGCCTGTCCTGCAAGTGTGTTTGCAACCAGGGACGATATGCCGGCTCCG GCCCAAGAAGTTCCGATCACTGCTCTCGAAACACTCTCTTCTATAACCCA GGCGCTGCAGGATGCGATCTTATCATCGGAGCAGACGGAGGCTTCTCTTG ATGAACAACTTACCATCTCAGCGCAGAGAGCTGCGGAGAGGTCGCAGGTT TTGGACACAGCCTCAAAGTTCTCGACCGCAGTGACAAAAGAGACTCAAGA GCTGGCTTCTCTTCTTGAATCCGCAGTGCGCAAGTCCGACTCAGCATGCG CGAGTATTCGCAGTCTGGACTTACTTCTCACTCGCACGAACAAGGCATTG TCGTGGGCCGACGATATTCTAACTCTAAGGGTTTGCGCGGAAGGAGCCAA GACAAGCCTTAGCGCGGACGACCTCGCAAGTGCTGCCCGCCATGTACAGA CGTATCTTACCCTGGGCGATGCAATTCGAGCAGACTCTGCCTCTGCGACA GCCGTCTCTCAAATCGAGCAATCACGCGCAGAACTATCTCGAAAAGTTCG CAATGCAACCGAACAGAAACTCAAAGCAGAGCTTTCCACGGCAGACGCCA TCGGCGCCGTGCAGCTCTTCGTACCTATTGGACAAGCGGATGAAGGTCTG GCAAAGCTTTGTGAGCACCTCAAGGCACGACTTGCCCGCGAGAGCGATGG TGATGTGAGAGAATTACTGCTCAACTCAACAACAGAAGCTGTGGGGGCTG AGGAGCCGCACATCGTTGCTGTCGCCCGGCTCTTTGAAAGCGTTGCTGCA ATCGTACATGACGGAAGGGCGAGCCTTTTGAATCTGTTCGGGACTTCGTC TGTAACAGTTGTTCTTGAAAGTCTTCAAGAGCAATGTGATTCAAGTCTGA ATCGCATCCTTGATCGGTACGAAGAAGCCAAACGCCTGGATGAAGTCATG CGAGCATTGCGCTCGGAATCAACAAACGCAAGAGAGTTAGATGGCCTTCT CAATGAGCTTACATTGATGAGTCAAAGAATGGCGGGATATATCGACTTCC TTGTCGGTAAAAGAGTGCCAGCTTCTGCCGACGGGGCAACAGGAGAGGCA CATGATGAATTAAAAGCGGAATACCGCAAGGTCGAGAAGATGTTGGAAAA GACGGCACTGTATAAGAGAAAACGTGATCTGGCTGGATTCTACAACACCA TTGAATCATATTTTATGAGAGAGAATGCGAGGCTGGCGATCAAGATTGAC GAGAGTAACGGGGAGGATGCCGAGACTTCAACTGTTGTTGACGACTTCTT CTTCGTTTTGCAAAAGTGTTTCCAAAGAGCATTCGCCTACGGTGACACTG ATCCCGAGGTGCTGCGTTTGGTTCTAAATCAGGTCAGTCTTTGCCTCATG AATGATCTGATCCCCTACATGAGGCGAAGGCTTAGAGAAACTGAAGCAGC GCTGGAGAAGCTGTTTGGCGGTGCGGGGGCTGCTTCTGCTCTCCCAGCTG CAGCTTTGACAGTGTCATATCTCACAGAACTTGCGAAGGCAAACATTAGC ATACCAGGTGGGGGCGACATGTCGTCCAACAGTGCTGACGTCGCAAAGTA CGACTTTTTTGTAGCCCTCAACAACACTTCCGTTTCCGCAGATTATGCGA GTCGTCTCCGCAGCAACGTCGAGAAGGCAGTTCATGCATCGCCGAGGCTT TCAGTCGATGACAGAACTCTTGTGGTTGCACCTCTGACCAATATAAATGA CGCATCCCGCACACTTTTACAGGCGTCGGAACACGGGGTTGGCCGGTTGG CTTCTGTTTTATTGGACAGGATAACGTTTGTAGTGCAAAAATCACTGAGA CAGGCGTCGTATATGGTTTCAGAAGCTCAATACTCTCTCGATTCCGATGC GACTCCATCATTTTCGCGCGAGGTTGCCAATCAATTAGAGAGCAAAGTTC TGAGCCCTTCTCTCGAAAAGCGCCTCACGGAAAAGAACTGGGACGCACTC GTGCGACAGGTCGCCGAGTGGTACGCGCAACAAGTGGAGGGTCTTGTGTT TCTGCCGCCCACTTCGAACGCTGTGGATTCCAAATCGTTCACCGCGTTTG GGGGGTTGCGAGCAGATAGAGACGTGAGGGCCATCTCATCGTATTTCTCG AACAAGAGTCGACGAAGCACAGTGAGGGATGTGTTTGGAAGACTATCACA ACTGGCAATGCTGGTCAATCTTGAACGACCTGCCGAAGTCTATGACGTCT GGGGACCTAATGCGGGTGGAATGACATGGAGATTGACAACGGGTGAAGTG AGACGAGCACTGTCATTGCGCTCCGATTTCAATAAGGATGCAATCAAGTC TCTTAAGCTTTAG back to top
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