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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1121481.AUAS01000008_gene3123 |
| PFAMs | Kelch_1,Kelch_3,Kelch_4,Kelch_6 |
| Max annot lvl | 976|Bacteroidetes |
| Evalue | 4.13e-61 |
| EggNOG OGs | COG3055@1|root,COG3055@2|Bacteria,4NHHD@976|Bacteroidetes,47K9E@768503|Cytophagia |
| Description | Kelch repeat |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11756.t1 ID=Gvermi11756.t1|Name=Gvermi11756.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=874bp MAWYVLFLVALVLLPSVFAEASWKKVAVTGTYPGRGETAFSRCGGSKLCL LGGRGPNRVHILDSDTLEWSAGKQNSLEMHHFQGFQGPDECIWVVGAWTG PYPNEETINNIWRYCTDSNEWFMGDPVARPRGSGGAFFYNGKVYLVTGNV GGHRDGAMVVPWFDSYDPQTGKWERLPDIPHARDHCHAVVRNNKVYVAGG RRSISEAPEFFDDTVAEVDVYDFGSGTWSTITSLSRPRGGTVSAVYNNKV FLIGGEGDNRAWTEVDVLENENFQQGPSLPEPRHGTGAISCNGAIWIAGG ARVLGGGNNAKDTYAFFEGENPPPCREAENSASIAEPSTSEDTFDSTETA HEEEAQEQVEEHKEEVGIFQTTETPIPADVPDPVLSPMPVLTSEPVASST PTASPSFDTVLVEGDGNTVAVERSPESSEFIDNFASENESPQSTGMGTDY TEESDGEQSSKEGPGRHEKHFEKEPSESVPEYSVVASTNPEIAMSESPRA SPMQVEVEVVTESPVASPAPAVISFVSESPIVPSATAKIEFDIASPSASP LAVELDFVTESDSSELPMPSHSVHSPVIIASSPMTTFSAPIAASTQPTPS TSVLMIPSPVELEESNTLEKSSMEPSILADEMGPALDGYSSPEPTALVDG DFNDADMSSSTTEEPHSSDLFADDDELFLDPEPSSTEIDDGTGSCFPSNA LVELQDGSMKPMALLRIGDRVKVAHPAEFSEVFFFSHKHPNRDAEFLELK TSIEGTSLTLSPGHLVYANGELVKASAVKSGDQLSLGNDIGSALVTGVSR IRGSGLHNPHTLHGDIVVNGVVVSTFTSAVHPSIAKLLLKPFKVAFYALK NEEHMDIINTVVLRALERTWWKM* back to topspliced messenger RNA >Gvermi11756.t1 ID=Gvermi11756.t1|Name=Gvermi11756.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2622bp|location=Sequence derived from alignment at ScGOVlb_3404:1922883..1925670- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTTGGTACGTCTTGTTTCTTGTTGCTCTGGTCCTACTTCCCTCTGT TTTTGCTGAAGCCTCTTGGAAAAAGGTTGCAGTGACTGGAACCTATCCTG GACGAGGAGAGACGGCCTTCTCCAGATGCGGGGGCAGCAAACTATGCCTT CTGGGGGGGCGAGGTCCGAACCGCGTGCACATTTTGGACTCTGACACCCT TGAATGGAGTGCAGGAAAGCAAAACTCTCTTGAGATGCATCATTTTCAAG GATTTCAAGGTCCTGACGAATGTATCTGGGTAGTCGGTGCTTGGACTGGT CCCTATCCGAATGAAGAGACGATTAACAATATATGGCGCTATTGTACAGA CTCTAATGAATGGTTCATGGGCGATCCCGTAGCTCGTCCTCGAGGCTCTG GCGGAGCATTCTTCTACAACGGAAAAGTATACCTGGTCACGGGAAATGTT GGAGGCCACCGTGATGGCGCAATGGTTGTGCCTTGGTTCGACTCCTATGA TCCCCAAACTGGAAAATGGGAGAGACTGCCTGATATTCCGCATGCGCGAG ACCATTGCCATGCTGTGGTTAGAAATAACAAAGTTTACGTCGCAGGTGGT CGGCGTTCCATATCAGAAGCACCAGAGTTTTTTGATGATACTGTGGCTGA GGTTGATGTCTATGACTTCGGTTCGGGTACATGGAGTACAATAACAAGCC TTAGTCGACCACGAGGTGGCACAGTATCTGCTGTGTATAACAACAAAGTA TTTTTGATCGGCGGCGAAGGCGACAATCGGGCTTGGACCGAGGTGGATGT TCTCGAGAACGAGAATTTCCAGCAAGGGCCATCTTTGCCGGAACCACGTC ACGGAACAGGAGCCATTTCTTGCAATGGAGCGATCTGGATTGCTGGGGGA GCACGAGTGCTTGGTGGGGGTAACAACGCGAAAGACACATATGCTTTCTT TGAGGGTGAGAACCCACCTCCCTGTCGAGAGGCCGAGAACAGTGCTTCGA TTGCCGAACCCTCCACGTCGGAAGACACATTTGATTCGACGGAGACTGCT CATGAAGAAGAAGCACAAGAACAAGTTGAAGAACACAAAGAAGAAGTGGG AATATTCCAAACAACCGAAACACCGATACCTGCAGACGTCCCGGATCCTG TGCTTTCGCCAATGCCTGTGTTGACCTCCGAGCCGGTAGCATCCAGCACC CCGACAGCGTCTCCATCTTTCGATACAGTTCTGGTTGAAGGTGATGGAAA CACTGTCGCAGTTGAAAGGTCTCCTGAATCTTCTGAGTTTATTGATAATT TCGCTTCCGAGAACGAGTCTCCTCAAAGTACTGGAATGGGTACCGATTAT ACTGAAGAGTCTGACGGGGAACAGTCTTCTAAAGAAGGGCCTGGCAGACA TGAAAAACACTTTGAAAAGGAACCGTCCGAGTCGGTTCCAGAGTATTCCG TGGTAGCCAGTACAAATCCTGAAATTGCGATGAGTGAATCCCCAAGAGCA TCACCGATGCAAGTCGAAGTCGAGGTTGTAACAGAATCTCCGGTGGCATC ACCAGCGCCAGCTGTAATCAGCTTTGTCTCTGAATCTCCCATAGTGCCGT CAGCAACAGCCAAGATCGAATTTGACATCGCATCGCCAAGTGCATCACCA TTGGCGGTTGAACTCGACTTCGTGACCGAGTCTGATTCTTCAGAGCTTCC AATGCCTTCGCACTCCGTCCATTCTCCTGTCATTATAGCATCATCTCCAA TGACGACCTTTTCGGCTCCAATCGCCGCATCAACTCAGCCTACACCCTCT ACATCTGTTCTCATGATTCCTTCTCCTGTTGAATTAGAAGAATCAAACAC ACTCGAAAAATCCTCAATGGAACCTTCAATACTTGCAGACGAGATGGGCC CTGCTTTAGATGGCTATTCGTCCCCTGAGCCTACCGCGTTGGTAGATGGT GATTTCAATGATGCAGATATGTCGTCAAGTACAACGGAGGAACCTCACAG TTCTGATTTGTTCGCCGATGACGATGAGCTATTTCTTGACCCTGAGCCCT CATCAACAGAAATTGATGACGGAACGGGTTCTTGTTTTCCGTCTAATGCT CTGGTCGAGTTGCAGGATGGTTCAATGAAACCCATGGCTTTGCTTCGTAT TGGAGATCGCGTGAAGGTTGCACATCCTGCTGAGTTCAGCGAAGTCTTTT TCTTCTCACATAAGCACCCGAACAGAGACGCAGAGTTTCTTGAACTGAAG ACATCTATCGAAGGTACATCTTTGACACTCTCACCCGGGCATTTGGTGTA TGCAAATGGGGAGTTAGTGAAAGCCTCCGCGGTCAAAAGCGGCGATCAAC TATCACTTGGAAACGATATTGGGAGTGCACTTGTGACTGGAGTGTCTAGA ATTAGGGGGTCTGGATTGCACAATCCACACACTTTGCACGGAGATATTGT CGTTAATGGCGTGGTTGTCAGCACTTTTACATCTGCAGTTCATCCAAGCA TTGCAAAACTGCTCCTCAAACCATTCAAAGTAGCTTTCTACGCTCTCAAA AATGAGGAGCACATGGATATTATCAATACAGTTGTTCTTCGAGCTCTTGA AAGAACTTGGTGGAAAATGTGA back to topprotein sequence of Gvermi11756.t1 >Gvermi11756.t1 ID=Gvermi11756.t1|Name=Gvermi11756.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=874bp
MAWYVLFLVALVLLPSVFAEASWKKVAVTGTYPGRGETAFSRCGGSKLCL LGGRGPNRVHILDSDTLEWSAGKQNSLEMHHFQGFQGPDECIWVVGAWTG PYPNEETINNIWRYCTDSNEWFMGDPVARPRGSGGAFFYNGKVYLVTGNV GGHRDGAMVVPWFDSYDPQTGKWERLPDIPHARDHCHAVVRNNKVYVAGG RRSISEAPEFFDDTVAEVDVYDFGSGTWSTITSLSRPRGGTVSAVYNNKV FLIGGEGDNRAWTEVDVLENENFQQGPSLPEPRHGTGAISCNGAIWIAGG ARVLGGGNNAKDTYAFFEGENPPPCREAENSASIAEPSTSEDTFDSTETA HEEEAQEQVEEHKEEVGIFQTTETPIPADVPDPVLSPMPVLTSEPVASST PTASPSFDTVLVEGDGNTVAVERSPESSEFIDNFASENESPQSTGMGTDY TEESDGEQSSKEGPGRHEKHFEKEPSESVPEYSVVASTNPEIAMSESPRA SPMQVEVEVVTESPVASPAPAVISFVSESPIVPSATAKIEFDIASPSASP LAVELDFVTESDSSELPMPSHSVHSPVIIASSPMTTFSAPIAASTQPTPS TSVLMIPSPVELEESNTLEKSSMEPSILADEMGPALDGYSSPEPTALVDG DFNDADMSSSTTEEPHSSDLFADDDELFLDPEPSSTEIDDGTGSCFPSNA LVELQDGSMKPMALLRIGDRVKVAHPAEFSEVFFFSHKHPNRDAEFLELK TSIEGTSLTLSPGHLVYANGELVKASAVKSGDQLSLGNDIGSALVTGVSR IRGSGLHNPHTLHGDIVVNGVVVSTFTSAVHPSIAKLLLKPFKVAFYALK NEEHMDIINTVVLRALERTWWKM* back to topmRNA from alignment at ScGOVlb_3404:1922883..1925670- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11756.t1 ID=Gvermi11756.t1|Name=Gvermi11756.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2788bp|location=Sequence derived from alignment at ScGOVlb_3404:1922883..1925670- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCTTGGTACGTCTTGTTTCTTGTTGCTCTGGTCCTACTTCCCTCTGT
TTTTGCTGAAGCCTCTTGGAAAAAGGTTGCAGTGACTGGAACCTATCCTG
GACGAGGAGAGACGGCCTTCTCCAGATGCGGGGGCAGCAAACTATGCCTT
CTGGGGGGGCGAGGTCCGAACCGCGTGCACATTTTGGACTCTGACACCCT
TGAATGGAGTGCAGGAAAGCAAAACTCTCTTGAGATGCATCATTTTCAAG
GATTTCAAGGTCCTGACGAATGTATCTGGGTAGTCGGTGCTTGGACTGGT
CCCTATCCGAATGAAGAGACGATTAACAATATATGGCGCTATTGTACAGA
CTCTAATGAATGGTTCATGGGCGATCCCGTAGCTCGTCCTCGAGGCTCTG
GCGGAGCATTCTTCTACAACGGAAAAGTATACCTGGTCACGGGAAATGTT
GGAGGCCACCGTGATGGCGCAATGGTTGTGCCTTGGTTCGACTCCTATGA
TCCCCAAACTGGAAAATGGGAGAGACTGCCTGATATTCCGCATGGTAAGT
GAAGCGGAGACTTTCATCATTGAACATTGAAATCATTCTAACCGAAACTT
CTTACGTTCATAGCGCGAGACCATTGCCATGCTGTGGTTAGAAATAACAA
AGTTTACGTCGCAGGTGGTCGGCGTTCCATATCAGAAGCACCAGAGTTTT
TTGATGATACTGTGGCTGAGGTTGATGTCTATGACTTCGGTTCGGGTACA
TGGAGTACAATAACAAGCCTTAGTCGACCACGAGGTGGCACAGTATCTGC
TGTGTATAACAACAAAGTATTTTTGATCGGCGGCGAAGGCGACAATCGGG
CTTGGACCGAGGTGGATGTTCTCGAGAACGAGAATTTCCAGCAAGGGCCA
TCTTTGCCGGAACCACGTCACGGAACAGGAGCCATTTCTTGCAATGGAGC
GATCTGGATTGCTGGGGGAGCACGAGTGCTTGGTGGGGGTAACAACGCGA
AAGACACATATGCTTTCTTTGAGGGTGAGAACCCACCTCCCTGTCGAGAG
GCCGAGAACAGTGCTTCGATTGCCGAACCCTCCACGTCGGAAGACACATT
TGATTCGACGGAGACTGCTCATGAAGAAGAAGCACAAGAACAAGTTGAAG
AACACAAAGAAGAAGTGGGAATATTCCAAACAACCGAAACACCGATACCT
GCAGACGTCCCGGATCCTGTGCTTTCGCCAATGCCTGTGTTGACCTCCGA
GCCGGTAGCATCCAGCACCCCGACAGCGTCTCCATCTTTCGATACAGTTC
TGGTTGAAGGTGATGGAAACACTGTCGCAGTTGAAAGGTCTCCTGAATCT
TCTGAGTTTATTGATAATTTCGCTTCCGAGAACGAGTCTCCTCAAAGTAC
TGGAATGGGTACCGATTATACTGAAGAGTCTGACGGGGAACAGTCTTCTA
AAGAAGGGCCTGGCAGACATGAAAAACACTTTGAAAAGGAACCGTCCGAG
TCGGTTCCAGAGTATTCCGTGGTAGCCAGTACAAATCCTGAAATTGCGAT
GAGTGAATCCCCAAGAGCATCACCGATGCAAGTCGAAGTCGAGGTTGTAA
CAGAATCTCCGGTGGCATCACCAGCGCCAGCTGTAATCAGCTTTGTCTCT
GAATCTCCCATAGTGCCGTCAGCAACAGCCAAGATCGAATTTGACATCGC
ATCGCCAAGTGCATCACCATTGGCGGTTGAACTCGACTTCGTGACCGAGT
CTGATTCTTCAGAGCTTCCAATGCCTTCGCACTCCGTCCATTCTCCTGTC
ATTATAGCATCATCTCCAATGACGACCTTTTCGGCTCCAATCGCCGCATC
AACTCAGCCTACACCCTCTACATCTGTTCTCATGATTCCTTCTCCTGTTG
AATTAGAAGAATCAAACACACTCGAAAAATCCTCAATGGAACCTTCAATA
CTTGCAGACGAGATGGGCCCTGCTTTAGATGGCTGTAAGTTATTTCCGTT
CCGGTAATGTTCCTGCTCTGTCTTTTTTTGTGTACTCATTATCCTATTAT
TTTACTAACATCTAATATGATACTGAAACAGATTCGTCCCCTGAGCCTAC
CGCGTTGGTAGATGGTGATTTCAATGATGCAGATATGTCGTCAAGTACAA
CGGAGGAACCTCACAGTTCTGATTTGTTCGCCGATGACGATGAGCTATTT
CTTGACCCTGAGCCCTCATCAACAGAAATTGATGACGGAACGGGTTCTTG
TTTTCCGTCTAATGCTCTGGTCGAGTTGCAGGATGGTTCAATGAAACCCA
TGGCTTTGCTTCGTATTGGAGATCGCGTGAAGGTTGCACATCCTGCTGAG
TTCAGCGAAGTCTTTTTCTTCTCACATAAGCACCCGAACAGAGACGCAGA
GTTTCTTGAACTGAAGACATCTATCGAAGGTACATCTTTGACACTCTCAC
CCGGGCATTTGGTGTATGCAAATGGGGAGTTAGTGAAAGCCTCCGCGGTC
AAAAGCGGCGATCAACTATCACTTGGAAACGATATTGGGAGTGCACTTGT
GACTGGAGTGTCTAGAATTAGGGGGTCTGGATTGCACAATCCACACACTT
TGCACGGAGATATTGTCGTTAATGGCGTGGTTGTCAGCACTTTTACATCT
GCAGTTCATCCAAGCATTGCAAAACTGCTCCTCAAACCATTCAAAGTAGC
TTTCTACGCTCTCAAAAATGAGGAGCACATGGATATTATCAATACAGTTG
TTCTTCGAGCTCTTGAAAGAACTTGGTGGAAAATGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:1922883..1925670- >Gvermi11756.t1 ID=Gvermi11756.t1|Name=Gvermi11756.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2622bp|location=Sequence derived from alignment at ScGOVlb_3404:1922883..1925670- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCTTGGTACGTCTTGTTTCTTGTTGCTCTGGTCCTACTTCCCTCTGT TTTTGCTGAAGCCTCTTGGAAAAAGGTTGCAGTGACTGGAACCTATCCTG GACGAGGAGAGACGGCCTTCTCCAGATGCGGGGGCAGCAAACTATGCCTT CTGGGGGGGCGAGGTCCGAACCGCGTGCACATTTTGGACTCTGACACCCT TGAATGGAGTGCAGGAAAGCAAAACTCTCTTGAGATGCATCATTTTCAAG GATTTCAAGGTCCTGACGAATGTATCTGGGTAGTCGGTGCTTGGACTGGT CCCTATCCGAATGAAGAGACGATTAACAATATATGGCGCTATTGTACAGA CTCTAATGAATGGTTCATGGGCGATCCCGTAGCTCGTCCTCGAGGCTCTG GCGGAGCATTCTTCTACAACGGAAAAGTATACCTGGTCACGGGAAATGTT GGAGGCCACCGTGATGGCGCAATGGTTGTGCCTTGGTTCGACTCCTATGA TCCCCAAACTGGAAAATGGGAGAGACTGCCTGATATTCCGCATGCGCGAG ACCATTGCCATGCTGTGGTTAGAAATAACAAAGTTTACGTCGCAGGTGGT CGGCGTTCCATATCAGAAGCACCAGAGTTTTTTGATGATACTGTGGCTGA GGTTGATGTCTATGACTTCGGTTCGGGTACATGGAGTACAATAACAAGCC TTAGTCGACCACGAGGTGGCACAGTATCTGCTGTGTATAACAACAAAGTA TTTTTGATCGGCGGCGAAGGCGACAATCGGGCTTGGACCGAGGTGGATGT TCTCGAGAACGAGAATTTCCAGCAAGGGCCATCTTTGCCGGAACCACGTC ACGGAACAGGAGCCATTTCTTGCAATGGAGCGATCTGGATTGCTGGGGGA GCACGAGTGCTTGGTGGGGGTAACAACGCGAAAGACACATATGCTTTCTT TGAGGGTGAGAACCCACCTCCCTGTCGAGAGGCCGAGAACAGTGCTTCGA TTGCCGAACCCTCCACGTCGGAAGACACATTTGATTCGACGGAGACTGCT CATGAAGAAGAAGCACAAGAACAAGTTGAAGAACACAAAGAAGAAGTGGG AATATTCCAAACAACCGAAACACCGATACCTGCAGACGTCCCGGATCCTG TGCTTTCGCCAATGCCTGTGTTGACCTCCGAGCCGGTAGCATCCAGCACC CCGACAGCGTCTCCATCTTTCGATACAGTTCTGGTTGAAGGTGATGGAAA CACTGTCGCAGTTGAAAGGTCTCCTGAATCTTCTGAGTTTATTGATAATT TCGCTTCCGAGAACGAGTCTCCTCAAAGTACTGGAATGGGTACCGATTAT ACTGAAGAGTCTGACGGGGAACAGTCTTCTAAAGAAGGGCCTGGCAGACA TGAAAAACACTTTGAAAAGGAACCGTCCGAGTCGGTTCCAGAGTATTCCG TGGTAGCCAGTACAAATCCTGAAATTGCGATGAGTGAATCCCCAAGAGCA TCACCGATGCAAGTCGAAGTCGAGGTTGTAACAGAATCTCCGGTGGCATC ACCAGCGCCAGCTGTAATCAGCTTTGTCTCTGAATCTCCCATAGTGCCGT CAGCAACAGCCAAGATCGAATTTGACATCGCATCGCCAAGTGCATCACCA TTGGCGGTTGAACTCGACTTCGTGACCGAGTCTGATTCTTCAGAGCTTCC AATGCCTTCGCACTCCGTCCATTCTCCTGTCATTATAGCATCATCTCCAA TGACGACCTTTTCGGCTCCAATCGCCGCATCAACTCAGCCTACACCCTCT ACATCTGTTCTCATGATTCCTTCTCCTGTTGAATTAGAAGAATCAAACAC ACTCGAAAAATCCTCAATGGAACCTTCAATACTTGCAGACGAGATGGGCC CTGCTTTAGATGGCTATTCGTCCCCTGAGCCTACCGCGTTGGTAGATGGT GATTTCAATGATGCAGATATGTCGTCAAGTACAACGGAGGAACCTCACAG TTCTGATTTGTTCGCCGATGACGATGAGCTATTTCTTGACCCTGAGCCCT CATCAACAGAAATTGATGACGGAACGGGTTCTTGTTTTCCGTCTAATGCT CTGGTCGAGTTGCAGGATGGTTCAATGAAACCCATGGCTTTGCTTCGTAT TGGAGATCGCGTGAAGGTTGCACATCCTGCTGAGTTCAGCGAAGTCTTTT TCTTCTCACATAAGCACCCGAACAGAGACGCAGAGTTTCTTGAACTGAAG ACATCTATCGAAGGTACATCTTTGACACTCTCACCCGGGCATTTGGTGTA TGCAAATGGGGAGTTAGTGAAAGCCTCCGCGGTCAAAAGCGGCGATCAAC TATCACTTGGAAACGATATTGGGAGTGCACTTGTGACTGGAGTGTCTAGA ATTAGGGGGTCTGGATTGCACAATCCACACACTTTGCACGGAGATATTGT CGTTAATGGCGTGGTTGTCAGCACTTTTACATCTGCAGTTCATCCAAGCA TTGCAAAACTGCTCCTCAAACCATTCAAAGTAGCTTTCTACGCTCTCAAA AATGAGGAGCACATGGATATTATCAATACAGTTGTTCTTCGAGCTCTTGA AAGAACTTGGTGGAAAATGTGA back to top
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