Gvermi11741.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11741.t1
Unique NameGvermi11741.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length636
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1867749..1869656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314271.RB2654_08177
PFAMsGlyco_transf_7C
Max annot lvl28211|Alphaproteobacteria
Evalue2.84e-32
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria
DescriptionN-terminal domain of galactosyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11741Gvermi11741Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1867749..1869656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11741.t1.stop1Gvermi11741.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1867749..1867751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11741.t1.CDS1Gvermi11741.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1867749..1869656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11741.t1.exon1Gvermi11741.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1867749..1869656 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11741.t1.start1Gvermi11741.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1869654..1869656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11741.t1Gvermi11741.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1867749..1869656 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11741.t1 ID=Gvermi11741.t1|Name=Gvermi11741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp
LAPPPTPVLKDASLQHIRYIRSRRKKGSVTLVAACRDRTAFLQTALPGWL
KAVRPQDDILLVDWGTRPPDHVPLEEVVRITAGPKVSVVTVKEPGQWVLS
RAYNLAFSLATGEWIFKVDCDTEVRQSFFDRHPLQMKHPQSSFFYRFDWR
KAADENQKHLAGVFLARADHIARVHGYDERIATYGWDDSDLYSRLQANGT
PEGERLVPLDIQPATLFHMNHGDDLRSANQHLSMGPSMETELNSQAVSIL
SNWQDVAPTERTVYTFDIFSRDARFIAARPQKTPVPLLDQLSLEQRSSIV
DESTNRLLHDVYGFPWSVLTEINRSRSELARSLAALSKSAKSRFSSGLIF
AEVGGSVPQRLLAMSSALALAIIYERPLFLAWSSGSREEPTPRITDFFDV
DNSGFLLDDDLSISSKRKGARIYQIGRWKCRHSLEICARSDAAFETMTEF
RTGSHDDENKAAQEVLDVLRGKVSGKRNVLLRMEGAFPLQTPSERSRAFA
SLTPSSALASHVNKLGAVSDHVGVYLGPGIRQRGIDAMVKRLRLHTGEST
LFFVSGAERSVVDVTRKLLPSSSEVSAAVDEPVLYGATQEIRDTTREIAE
LYALSTCRDMVNDGRPPTSVLEVLSLLKRRMSQRS*
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spliced messenger RNA

>Gvermi11741.t1 ID=Gvermi11741.t1|Name=Gvermi11741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1908bp|location=Sequence derived from alignment at ScGOVlb_3404:1867749..1869656- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCACCGCCTCCAACTCCAGTTCTCAAAGATGCTAGCCTTCAGCACAT
CAGGTACATTCGTAGTAGAAGGAAGAAAGGATCTGTAACACTCGTCGCAG
CATGCAGGGACCGCACAGCTTTCTTGCAGACAGCATTGCCGGGCTGGTTG
AAAGCTGTCAGGCCACAAGATGATATTTTGCTCGTTGATTGGGGCACCAG
ACCTCCAGACCATGTTCCCCTTGAGGAGGTTGTCAGAATCACGGCTGGCC
CGAAGGTGTCCGTTGTTACCGTAAAAGAACCGGGTCAATGGGTGCTGTCC
CGAGCCTATAATCTTGCATTTTCGCTTGCGACTGGCGAATGGATTTTCAA
AGTCGATTGTGATACCGAGGTTCGCCAAAGTTTTTTCGACCGTCATCCAC
TGCAAATGAAGCATCCGCAGTCTTCCTTCTTTTACCGTTTTGACTGGAGA
AAAGCTGCGGACGAAAACCAAAAACATCTCGCAGGTGTCTTTCTTGCTCG
TGCGGATCACATAGCACGTGTTCACGGTTATGATGAGCGCATTGCTACTT
ATGGTTGGGATGACTCTGATCTCTATTCCCGCCTGCAAGCCAATGGCACT
CCAGAGGGGGAACGGCTTGTTCCACTGGATATTCAGCCTGCCACCTTGTT
CCATATGAATCATGGAGACGATCTAAGATCCGCGAACCAACATCTTTCCA
TGGGACCCTCAATGGAAACCGAATTGAACAGTCAAGCAGTTTCCATTCTT
TCCAACTGGCAAGATGTAGCCCCAACAGAAAGGACCGTTTATACTTTCGA
TATATTCTCGCGGGATGCGCGTTTCATTGCGGCAAGACCCCAAAAAACGC
CTGTCCCACTTCTTGATCAGCTATCGCTCGAGCAACGTTCCTCAATCGTA
GACGAAAGCACCAATCGATTGCTTCACGATGTGTACGGTTTTCCCTGGAG
CGTGTTGACAGAGATCAACCGTTCACGCTCAGAACTAGCTCGCTCGCTTG
CTGCACTGAGCAAATCAGCGAAGTCACGATTTTCGTCTGGGCTCATCTTT
GCTGAAGTGGGAGGATCCGTGCCTCAACGTTTGCTCGCAATGTCTTCCGC
TCTGGCACTGGCTATTATTTATGAGAGACCTCTGTTTCTTGCATGGAGTT
CTGGCTCTCGGGAGGAACCTACACCACGCATAACCGACTTTTTCGATGTT
GATAATAGTGGTTTTCTTTTGGATGACGACCTTTCAATTTCATCCAAACG
CAAAGGGGCGCGCATTTATCAAATCGGAAGATGGAAATGTCGCCACTCCC
TTGAGATTTGTGCTCGATCCGATGCTGCGTTCGAGACAATGACCGAGTTT
CGTACGGGGTCACATGATGACGAGAATAAGGCGGCTCAAGAGGTACTTGA
TGTCCTCAGAGGCAAAGTATCAGGGAAAAGAAACGTTCTTCTAAGGATGG
AGGGCGCTTTTCCGTTGCAGACACCTTCTGAAAGGTCGCGTGCGTTTGCA
TCATTAACTCCTTCTTCGGCGCTAGCGTCTCATGTGAACAAGCTTGGAGC
AGTTTCAGATCATGTAGGTGTTTACCTCGGCCCCGGTATACGTCAGAGAG
GAATAGATGCTATGGTGAAGCGACTCCGACTTCATACAGGTGAAAGCACA
TTGTTTTTCGTCAGTGGTGCTGAGCGCAGCGTTGTGGATGTCACACGGAA
GCTGCTGCCGTCATCTTCAGAAGTTTCAGCCGCCGTCGACGAACCCGTAT
TGTACGGAGCTACGCAGGAAATCAGAGACACGACACGAGAAATTGCAGAA
CTGTATGCACTTTCGACGTGCCGGGATATGGTTAACGACGGGCGTCCGCC
CACGTCTGTTTTAGAGGTTCTTTCGTTGCTGAAACGACGCATGTCTCAGC
GCTCGTAA
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protein sequence of Gvermi11741.t1

>Gvermi11741.t1 ID=Gvermi11741.t1|Name=Gvermi11741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=636bp
LAPPPTPVLKDASLQHIRYIRSRRKKGSVTLVAACRDRTAFLQTALPGWL
KAVRPQDDILLVDWGTRPPDHVPLEEVVRITAGPKVSVVTVKEPGQWVLS
RAYNLAFSLATGEWIFKVDCDTEVRQSFFDRHPLQMKHPQSSFFYRFDWR
KAADENQKHLAGVFLARADHIARVHGYDERIATYGWDDSDLYSRLQANGT
PEGERLVPLDIQPATLFHMNHGDDLRSANQHLSMGPSMETELNSQAVSIL
SNWQDVAPTERTVYTFDIFSRDARFIAARPQKTPVPLLDQLSLEQRSSIV
DESTNRLLHDVYGFPWSVLTEINRSRSELARSLAALSKSAKSRFSSGLIF
AEVGGSVPQRLLAMSSALALAIIYERPLFLAWSSGSREEPTPRITDFFDV
DNSGFLLDDDLSISSKRKGARIYQIGRWKCRHSLEICARSDAAFETMTEF
RTGSHDDENKAAQEVLDVLRGKVSGKRNVLLRMEGAFPLQTPSERSRAFA
SLTPSSALASHVNKLGAVSDHVGVYLGPGIRQRGIDAMVKRLRLHTGEST
LFFVSGAERSVVDVTRKLLPSSSEVSAAVDEPVLYGATQEIRDTTREIAE
LYALSTCRDMVNDGRPPTSVLEVLSLLKRRMSQRS*
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mRNA from alignment at ScGOVlb_3404:1867749..1869656-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11741.t1 ID=Gvermi11741.t1|Name=Gvermi11741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1908bp|location=Sequence derived from alignment at ScGOVlb_3404:1867749..1869656- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCACCGCCTCCAACTCCAGTTCTCAAAGATGCTAGCCTTCAGCACAT
CAGGTACATTCGTAGTAGAAGGAAGAAAGGATCTGTAACACTCGTCGCAG
CATGCAGGGACCGCACAGCTTTCTTGCAGACAGCATTGCCGGGCTGGTTG
AAAGCTGTCAGGCCACAAGATGATATTTTGCTCGTTGATTGGGGCACCAG
ACCTCCAGACCATGTTCCCCTTGAGGAGGTTGTCAGAATCACGGCTGGCC
CGAAGGTGTCCGTTGTTACCGTAAAAGAACCGGGTCAATGGGTGCTGTCC
CGAGCCTATAATCTTGCATTTTCGCTTGCGACTGGCGAATGGATTTTCAA
AGTCGATTGTGATACCGAGGTTCGCCAAAGTTTTTTCGACCGTCATCCAC
TGCAAATGAAGCATCCGCAGTCTTCCTTCTTTTACCGTTTTGACTGGAGA
AAAGCTGCGGACGAAAACCAAAAACATCTCGCAGGTGTCTTTCTTGCTCG
TGCGGATCACATAGCACGTGTTCACGGTTATGATGAGCGCATTGCTACTT
ATGGTTGGGATGACTCTGATCTCTATTCCCGCCTGCAAGCCAATGGCACT
CCAGAGGGGGAACGGCTTGTTCCACTGGATATTCAGCCTGCCACCTTGTT
CCATATGAATCATGGAGACGATCTAAGATCCGCGAACCAACATCTTTCCA
TGGGACCCTCAATGGAAACCGAATTGAACAGTCAAGCAGTTTCCATTCTT
TCCAACTGGCAAGATGTAGCCCCAACAGAAAGGACCGTTTATACTTTCGA
TATATTCTCGCGGGATGCGCGTTTCATTGCGGCAAGACCCCAAAAAACGC
CTGTCCCACTTCTTGATCAGCTATCGCTCGAGCAACGTTCCTCAATCGTA
GACGAAAGCACCAATCGATTGCTTCACGATGTGTACGGTTTTCCCTGGAG
CGTGTTGACAGAGATCAACCGTTCACGCTCAGAACTAGCTCGCTCGCTTG
CTGCACTGAGCAAATCAGCGAAGTCACGATTTTCGTCTGGGCTCATCTTT
GCTGAAGTGGGAGGATCCGTGCCTCAACGTTTGCTCGCAATGTCTTCCGC
TCTGGCACTGGCTATTATTTATGAGAGACCTCTGTTTCTTGCATGGAGTT
CTGGCTCTCGGGAGGAACCTACACCACGCATAACCGACTTTTTCGATGTT
GATAATAGTGGTTTTCTTTTGGATGACGACCTTTCAATTTCATCCAAACG
CAAAGGGGCGCGCATTTATCAAATCGGAAGATGGAAATGTCGCCACTCCC
TTGAGATTTGTGCTCGATCCGATGCTGCGTTCGAGACAATGACCGAGTTT
CGTACGGGGTCACATGATGACGAGAATAAGGCGGCTCAAGAGGTACTTGA
TGTCCTCAGAGGCAAAGTATCAGGGAAAAGAAACGTTCTTCTAAGGATGG
AGGGCGCTTTTCCGTTGCAGACACCTTCTGAAAGGTCGCGTGCGTTTGCA
TCATTAACTCCTTCTTCGGCGCTAGCGTCTCATGTGAACAAGCTTGGAGC
AGTTTCAGATCATGTAGGTGTTTACCTCGGCCCCGGTATACGTCAGAGAG
GAATAGATGCTATGGTGAAGCGACTCCGACTTCATACAGGTGAAAGCACA
TTGTTTTTCGTCAGTGGTGCTGAGCGCAGCGTTGTGGATGTCACACGGAA
GCTGCTGCCGTCATCTTCAGAAGTTTCAGCCGCCGTCGACGAACCCGTAT
TGTACGGAGCTACGCAGGAAATCAGAGACACGACACGAGAAATTGCAGAA
CTGTATGCACTTTCGACGTGCCGGGATATGGTTAACGACGGGCGTCCGCC
CACGTCTGTTTTAGAGGTTCTTTCGTTGCTGAAACGACGCATGTCTCAGC
GCTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1867749..1869656-

>Gvermi11741.t1 ID=Gvermi11741.t1|Name=Gvermi11741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1908bp|location=Sequence derived from alignment at ScGOVlb_3404:1867749..1869656- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCACCGCCTCCAACTCCAGTTCTCAAAGATGCTAGCCTTCAGCACAT
CAGGTACATTCGTAGTAGAAGGAAGAAAGGATCTGTAACACTCGTCGCAG
CATGCAGGGACCGCACAGCTTTCTTGCAGACAGCATTGCCGGGCTGGTTG
AAAGCTGTCAGGCCACAAGATGATATTTTGCTCGTTGATTGGGGCACCAG
ACCTCCAGACCATGTTCCCCTTGAGGAGGTTGTCAGAATCACGGCTGGCC
CGAAGGTGTCCGTTGTTACCGTAAAAGAACCGGGTCAATGGGTGCTGTCC
CGAGCCTATAATCTTGCATTTTCGCTTGCGACTGGCGAATGGATTTTCAA
AGTCGATTGTGATACCGAGGTTCGCCAAAGTTTTTTCGACCGTCATCCAC
TGCAAATGAAGCATCCGCAGTCTTCCTTCTTTTACCGTTTTGACTGGAGA
AAAGCTGCGGACGAAAACCAAAAACATCTCGCAGGTGTCTTTCTTGCTCG
TGCGGATCACATAGCACGTGTTCACGGTTATGATGAGCGCATTGCTACTT
ATGGTTGGGATGACTCTGATCTCTATTCCCGCCTGCAAGCCAATGGCACT
CCAGAGGGGGAACGGCTTGTTCCACTGGATATTCAGCCTGCCACCTTGTT
CCATATGAATCATGGAGACGATCTAAGATCCGCGAACCAACATCTTTCCA
TGGGACCCTCAATGGAAACCGAATTGAACAGTCAAGCAGTTTCCATTCTT
TCCAACTGGCAAGATGTAGCCCCAACAGAAAGGACCGTTTATACTTTCGA
TATATTCTCGCGGGATGCGCGTTTCATTGCGGCAAGACCCCAAAAAACGC
CTGTCCCACTTCTTGATCAGCTATCGCTCGAGCAACGTTCCTCAATCGTA
GACGAAAGCACCAATCGATTGCTTCACGATGTGTACGGTTTTCCCTGGAG
CGTGTTGACAGAGATCAACCGTTCACGCTCAGAACTAGCTCGCTCGCTTG
CTGCACTGAGCAAATCAGCGAAGTCACGATTTTCGTCTGGGCTCATCTTT
GCTGAAGTGGGAGGATCCGTGCCTCAACGTTTGCTCGCAATGTCTTCCGC
TCTGGCACTGGCTATTATTTATGAGAGACCTCTGTTTCTTGCATGGAGTT
CTGGCTCTCGGGAGGAACCTACACCACGCATAACCGACTTTTTCGATGTT
GATAATAGTGGTTTTCTTTTGGATGACGACCTTTCAATTTCATCCAAACG
CAAAGGGGCGCGCATTTATCAAATCGGAAGATGGAAATGTCGCCACTCCC
TTGAGATTTGTGCTCGATCCGATGCTGCGTTCGAGACAATGACCGAGTTT
CGTACGGGGTCACATGATGACGAGAATAAGGCGGCTCAAGAGGTACTTGA
TGTCCTCAGAGGCAAAGTATCAGGGAAAAGAAACGTTCTTCTAAGGATGG
AGGGCGCTTTTCCGTTGCAGACACCTTCTGAAAGGTCGCGTGCGTTTGCA
TCATTAACTCCTTCTTCGGCGCTAGCGTCTCATGTGAACAAGCTTGGAGC
AGTTTCAGATCATGTAGGTGTTTACCTCGGCCCCGGTATACGTCAGAGAG
GAATAGATGCTATGGTGAAGCGACTCCGACTTCATACAGGTGAAAGCACA
TTGTTTTTCGTCAGTGGTGCTGAGCGCAGCGTTGTGGATGTCACACGGAA
GCTGCTGCCGTCATCTTCAGAAGTTTCAGCCGCCGTCGACGAACCCGTAT
TGTACGGAGCTACGCAGGAAATCAGAGACACGACACGAGAAATTGCAGAA
CTGTATGCACTTTCGACGTGCCGGGATATGGTTAACGACGGGCGTCCGCC
CACGTCTGTTTTAGAGGTTCTTTCGTTGCTGAAACGACGCATGTCTCAGC
GCTCGTAA
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