Gvermi11738.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11738.t1
Unique NameGvermi11738.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1861934..1863433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI1G29760.1
PFAMsGlyco_transf_92
Max annot lvl35493|Streptophyta
Evalue8.12e-11
EggNOG OGsCOG0463@1|root,2QTF9@2759|Eukaryota,37N9S@33090|Viridiplantae,3GBHN@35493|Streptophyta,3KVVU@4447|Liliopsida,3I4Q3@38820|Poales
DescriptionGlycosyltransferase family 92
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11738Gvermi11738Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1861934..1863433 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11738.t1.stop1Gvermi11738.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1861934..1861936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11738.t1.CDS1Gvermi11738.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1861934..1863433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11738.t1.exon1Gvermi11738.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1861934..1863433 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11738.t1.start1Gvermi11738.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1863431..1863433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11738.t1Gvermi11738.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1861934..1863433 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11738.t1 ID=Gvermi11738.t1|Name=Gvermi11738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=500bp
MKWPTTPSKTRASFPIINILYVIITLIIAANLFKFLPTSTPPRLSPLLSH
KSPTYPPVLNDWKRPLTISLHARLNGASVRLTLFTTGVHTDTYGRSFSPV
GCMIGTHIVSAVEKRPEMTVCLVHSSYMVHDAALTVLLHFDETLRNAINT
TQHVKGEDFTVLPEDISILSERTPIPTNMPSQLAAIRTAVRWRNHMMDTS
GKSRYQLCMMTAMRQYPFLLSDWMAYYRRMGVDYFYIYENNAGKPLSRYI
DTNLAEVVPWPWSRSQMQSNNHFLLAAPNRCRFVAFFDADEYVMVGDRRR
NSLKRYILSRREEGYAQIVFHFLMMVNNGFVKRPKGSLPDLYTLREKGQK
IKLGKVAIDTDFEWTWHRIHMVEGRGCKTYWNTSLELDPQTLRHNAMLVH
YSKRSWEDFVAKNEAGGASVMTKGRPKKVLKVDEPDETYMSMEGQQFEGF
RGRWRRVMKWADDGCIHLERWNNDGNRTRQSYCPRCFLDHLRVTHCDSL*
back to top

spliced messenger RNA

>Gvermi11738.t1 ID=Gvermi11738.t1|Name=Gvermi11738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:1861934..1863433- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATGGCCAACTACTCCATCAAAAACACGTGCTTCATTTCCAATCAT
AAACATACTTTACGTCATTATAACCCTCATTATAGCAGCTAATCTGTTCA
AATTTCTCCCCACATCAACACCCCCTCGACTCTCTCCCCTTCTTTCTCAC
AAAAGTCCGACTTATCCTCCAGTGTTGAACGATTGGAAACGTCCTCTGAC
CATTTCGCTTCATGCTCGTCTCAATGGGGCGTCTGTGCGTCTTACTTTGT
TCACCACTGGCGTTCATACCGACACCTACGGACGTTCATTCTCCCCAGTT
GGTTGTATGATTGGAACCCACATTGTCTCTGCAGTTGAGAAGCGTCCTGA
GATGACTGTTTGTCTCGTGCATTCCTCTTATATGGTACATGATGCTGCGC
TTACCGTGCTTCTGCATTTTGATGAAACTCTGCGAAATGCAATCAACACC
ACACAGCATGTCAAAGGTGAGGATTTTACCGTGCTTCCGGAAGATATTAG
CATACTTTCTGAACGAACACCCATTCCCACCAACATGCCGTCTCAATTAG
CAGCCATACGCACAGCGGTCAGATGGCGAAATCATATGATGGACACTTCC
GGTAAGTCTCGTTATCAACTCTGCATGATGACTGCTATGCGACAATATCC
ATTTCTGCTTTCCGATTGGATGGCCTATTACAGACGTATGGGTGTGGACT
ACTTCTATATATACGAAAACAACGCTGGGAAACCACTAAGCCGATACATT
GATACCAATTTAGCGGAGGTGGTACCTTGGCCCTGGTCTCGTTCCCAAAT
GCAAAGCAACAATCATTTCTTGCTAGCGGCTCCAAATCGATGCAGATTTG
TCGCGTTTTTTGATGCAGATGAGTACGTTATGGTTGGTGATAGGCGACGT
AACTCCCTCAAACGGTATATCTTAAGTCGACGCGAAGAAGGATATGCGCA
GATCGTGTTTCATTTTTTAATGATGGTAAATAATGGTTTCGTGAAGCGTC
CTAAAGGAAGTCTTCCTGATCTTTATACACTACGAGAAAAAGGGCAAAAG
ATTAAACTGGGCAAGGTTGCGATTGATACAGATTTCGAGTGGACTTGGCA
CCGAATTCACATGGTAGAGGGACGAGGTTGCAAAACGTACTGGAACACTA
GTTTGGAGCTTGATCCCCAAACTCTACGGCATAATGCAATGCTTGTCCAT
TACTCAAAGCGAAGCTGGGAGGATTTTGTTGCCAAGAACGAAGCGGGGGG
GGCTAGCGTGATGACCAAAGGGCGTCCCAAGAAAGTTCTTAAAGTTGATG
AACCCGATGAGACTTACATGAGCATGGAAGGGCAGCAATTCGAAGGGTTT
AGAGGGCGGTGGAGAAGAGTGATGAAGTGGGCCGATGATGGTTGTATTCA
CCTAGAAAGATGGAATAATGATGGAAACAGAACCAGGCAAAGTTATTGTC
CACGCTGTTTTTTGGATCATTTAAGGGTCACACACTGTGATTCTTTGTGA
back to top

protein sequence of Gvermi11738.t1

>Gvermi11738.t1 ID=Gvermi11738.t1|Name=Gvermi11738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=500bp
MKWPTTPSKTRASFPIINILYVIITLIIAANLFKFLPTSTPPRLSPLLSH
KSPTYPPVLNDWKRPLTISLHARLNGASVRLTLFTTGVHTDTYGRSFSPV
GCMIGTHIVSAVEKRPEMTVCLVHSSYMVHDAALTVLLHFDETLRNAINT
TQHVKGEDFTVLPEDISILSERTPIPTNMPSQLAAIRTAVRWRNHMMDTS
GKSRYQLCMMTAMRQYPFLLSDWMAYYRRMGVDYFYIYENNAGKPLSRYI
DTNLAEVVPWPWSRSQMQSNNHFLLAAPNRCRFVAFFDADEYVMVGDRRR
NSLKRYILSRREEGYAQIVFHFLMMVNNGFVKRPKGSLPDLYTLREKGQK
IKLGKVAIDTDFEWTWHRIHMVEGRGCKTYWNTSLELDPQTLRHNAMLVH
YSKRSWEDFVAKNEAGGASVMTKGRPKKVLKVDEPDETYMSMEGQQFEGF
RGRWRRVMKWADDGCIHLERWNNDGNRTRQSYCPRCFLDHLRVTHCDSL*
back to top

mRNA from alignment at ScGOVlb_3404:1861934..1863433-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11738.t1 ID=Gvermi11738.t1|Name=Gvermi11738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:1861934..1863433- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATGGCCAACTACTCCATCAAAAACACGTGCTTCATTTCCAATCAT
AAACATACTTTACGTCATTATAACCCTCATTATAGCAGCTAATCTGTTCA
AATTTCTCCCCACATCAACACCCCCTCGACTCTCTCCCCTTCTTTCTCAC
AAAAGTCCGACTTATCCTCCAGTGTTGAACGATTGGAAACGTCCTCTGAC
CATTTCGCTTCATGCTCGTCTCAATGGGGCGTCTGTGCGTCTTACTTTGT
TCACCACTGGCGTTCATACCGACACCTACGGACGTTCATTCTCCCCAGTT
GGTTGTATGATTGGAACCCACATTGTCTCTGCAGTTGAGAAGCGTCCTGA
GATGACTGTTTGTCTCGTGCATTCCTCTTATATGGTACATGATGCTGCGC
TTACCGTGCTTCTGCATTTTGATGAAACTCTGCGAAATGCAATCAACACC
ACACAGCATGTCAAAGGTGAGGATTTTACCGTGCTTCCGGAAGATATTAG
CATACTTTCTGAACGAACACCCATTCCCACCAACATGCCGTCTCAATTAG
CAGCCATACGCACAGCGGTCAGATGGCGAAATCATATGATGGACACTTCC
GGTAAGTCTCGTTATCAACTCTGCATGATGACTGCTATGCGACAATATCC
ATTTCTGCTTTCCGATTGGATGGCCTATTACAGACGTATGGGTGTGGACT
ACTTCTATATATACGAAAACAACGCTGGGAAACCACTAAGCCGATACATT
GATACCAATTTAGCGGAGGTGGTACCTTGGCCCTGGTCTCGTTCCCAAAT
GCAAAGCAACAATCATTTCTTGCTAGCGGCTCCAAATCGATGCAGATTTG
TCGCGTTTTTTGATGCAGATGAGTACGTTATGGTTGGTGATAGGCGACGT
AACTCCCTCAAACGGTATATCTTAAGTCGACGCGAAGAAGGATATGCGCA
GATCGTGTTTCATTTTTTAATGATGGTAAATAATGGTTTCGTGAAGCGTC
CTAAAGGAAGTCTTCCTGATCTTTATACACTACGAGAAAAAGGGCAAAAG
ATTAAACTGGGCAAGGTTGCGATTGATACAGATTTCGAGTGGACTTGGCA
CCGAATTCACATGGTAGAGGGACGAGGTTGCAAAACGTACTGGAACACTA
GTTTGGAGCTTGATCCCCAAACTCTACGGCATAATGCAATGCTTGTCCAT
TACTCAAAGCGAAGCTGGGAGGATTTTGTTGCCAAGAACGAAGCGGGGGG
GGCTAGCGTGATGACCAAAGGGCGTCCCAAGAAAGTTCTTAAAGTTGATG
AACCCGATGAGACTTACATGAGCATGGAAGGGCAGCAATTCGAAGGGTTT
AGAGGGCGGTGGAGAAGAGTGATGAAGTGGGCCGATGATGGTTGTATTCA
CCTAGAAAGATGGAATAATGATGGAAACAGAACCAGGCAAAGTTATTGTC
CACGCTGTTTTTTGGATCATTTAAGGGTCACACACTGTGATTCTTTGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:1861934..1863433-

>Gvermi11738.t1 ID=Gvermi11738.t1|Name=Gvermi11738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:1861934..1863433- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATGGCCAACTACTCCATCAAAAACACGTGCTTCATTTCCAATCAT
AAACATACTTTACGTCATTATAACCCTCATTATAGCAGCTAATCTGTTCA
AATTTCTCCCCACATCAACACCCCCTCGACTCTCTCCCCTTCTTTCTCAC
AAAAGTCCGACTTATCCTCCAGTGTTGAACGATTGGAAACGTCCTCTGAC
CATTTCGCTTCATGCTCGTCTCAATGGGGCGTCTGTGCGTCTTACTTTGT
TCACCACTGGCGTTCATACCGACACCTACGGACGTTCATTCTCCCCAGTT
GGTTGTATGATTGGAACCCACATTGTCTCTGCAGTTGAGAAGCGTCCTGA
GATGACTGTTTGTCTCGTGCATTCCTCTTATATGGTACATGATGCTGCGC
TTACCGTGCTTCTGCATTTTGATGAAACTCTGCGAAATGCAATCAACACC
ACACAGCATGTCAAAGGTGAGGATTTTACCGTGCTTCCGGAAGATATTAG
CATACTTTCTGAACGAACACCCATTCCCACCAACATGCCGTCTCAATTAG
CAGCCATACGCACAGCGGTCAGATGGCGAAATCATATGATGGACACTTCC
GGTAAGTCTCGTTATCAACTCTGCATGATGACTGCTATGCGACAATATCC
ATTTCTGCTTTCCGATTGGATGGCCTATTACAGACGTATGGGTGTGGACT
ACTTCTATATATACGAAAACAACGCTGGGAAACCACTAAGCCGATACATT
GATACCAATTTAGCGGAGGTGGTACCTTGGCCCTGGTCTCGTTCCCAAAT
GCAAAGCAACAATCATTTCTTGCTAGCGGCTCCAAATCGATGCAGATTTG
TCGCGTTTTTTGATGCAGATGAGTACGTTATGGTTGGTGATAGGCGACGT
AACTCCCTCAAACGGTATATCTTAAGTCGACGCGAAGAAGGATATGCGCA
GATCGTGTTTCATTTTTTAATGATGGTAAATAATGGTTTCGTGAAGCGTC
CTAAAGGAAGTCTTCCTGATCTTTATACACTACGAGAAAAAGGGCAAAAG
ATTAAACTGGGCAAGGTTGCGATTGATACAGATTTCGAGTGGACTTGGCA
CCGAATTCACATGGTAGAGGGACGAGGTTGCAAAACGTACTGGAACACTA
GTTTGGAGCTTGATCCCCAAACTCTACGGCATAATGCAATGCTTGTCCAT
TACTCAAAGCGAAGCTGGGAGGATTTTGTTGCCAAGAACGAAGCGGGGGG
GGCTAGCGTGATGACCAAAGGGCGTCCCAAGAAAGTTCTTAAAGTTGATG
AACCCGATGAGACTTACATGAGCATGGAAGGGCAGCAATTCGAAGGGTTT
AGAGGGCGGTGGAGAAGAGTGATGAAGTGGGCCGATGATGGTTGTATTCA
CCTAGAAAGATGGAATAATGATGGAAACAGAACCAGGCAAAGTTATTGTC
CACGCTGTTTTTTGGATCATTTAAGGGTCACACACTGTGATTCTTTGTGA
back to top