Gvermi11737.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11737.t1
Unique NameGvermi11737.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1859822..1860808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog39416.CAZ81670
Preferred nameBET2
PFAMsPrenyltrans
Max annot lvl4751|Fungi
KEGG koko:K05956
GOsGO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008318,GO:0009987,GO:0015031,GO:0015833,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0031267,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Evalue1.64e-112
EggNOG OGsCOG5029@1|root,KOG0366@2759|Eukaryota,38DTQ@33154|Opisthokonta,3NTZW@4751|Fungi,3QKS7@4890|Ascomycota
EC2.5.1.60
DescriptionBeta subunit
COG categoryO
BRITEko00000,ko01000,ko01006,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11737Gvermi11737Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1859822..1860808 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11737.t1.stop1Gvermi11737.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1859822..1859824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11737.t1.CDS1Gvermi11737.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1859822..1860808 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11737.t1.exon1Gvermi11737.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1859822..1860808 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11737.t1.start1Gvermi11737.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1860806..1860808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11737.t1Gvermi11737.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1859822..1860808 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11737.t1 ID=Gvermi11737.t1|Name=Gvermi11737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=329bp
MDTKKEKAGIVDSFDRNKHVAYIVGLEKKTKTTDALYFTDHKRLSGVYWA
LSSLCLMHELDVLPREPILEYVMSCYHPDVGAFGGNSDQDPHLLYTLSAL
QILAIYDRLDLVNPDQIMNHIVSLQQSDGSFSGDRWGEIDTRFSYCALLC
ARILRRTHMIDVSNAVSYVLSCQNFDGGFGCIAGAESHAGQIFCCVGALC
LAGALDRIEDDEKERLSLWLCERQLPCGGLNGRPDKLEDVCYSWWVLSSL
CMLGHVDWIDGNKLIHFIIRSADDVDGGFADRPGDMPDVFHTFFALAGLS
LMGNHNLAKIDAAWALTEDVVRRLKDAD*
back to top

spliced messenger RNA

>Gvermi11737.t1 ID=Gvermi11737.t1|Name=Gvermi11737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=987bp|location=Sequence derived from alignment at ScGOVlb_3404:1859822..1860808- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACAAAGAAAGAAAAGGCCGGGATTGTCGACAGCTTTGATCGGAA
CAAACACGTAGCCTACATAGTTGGCCTCGAGAAAAAAACCAAAACTACCG
ATGCACTTTACTTCACGGATCATAAGCGACTGTCTGGGGTGTATTGGGCT
CTATCCTCACTATGTCTCATGCACGAGCTTGATGTTCTTCCCAGAGAACC
CATCTTGGAGTACGTTATGAGTTGCTATCATCCAGATGTGGGTGCCTTTG
GGGGAAACAGTGATCAAGATCCACATTTGCTTTACACTTTGTCCGCCCTT
CAAATTTTAGCCATATATGATCGCCTTGATCTTGTTAATCCAGACCAGAT
TATGAACCACATTGTGTCCTTGCAACAGAGCGATGGCAGCTTTTCTGGTG
ACAGGTGGGGAGAAATTGATACCCGGTTCAGTTACTGTGCTTTACTCTGT
GCGAGAATCCTGAGAAGAACGCATATGATTGATGTATCTAATGCTGTTAG
CTACGTTTTAAGCTGTCAGAACTTTGACGGGGGTTTCGGATGCATTGCAG
GCGCGGAGAGTCATGCAGGTCAGATATTCTGCTGCGTCGGTGCACTTTGT
CTGGCGGGCGCCTTGGATCGTATAGAAGACGATGAAAAAGAACGACTATC
TCTCTGGCTTTGCGAAAGACAACTGCCATGCGGAGGGCTCAACGGTAGAC
CTGACAAACTTGAAGATGTATGTTATTCCTGGTGGGTTTTATCAAGTCTG
TGTATGTTGGGCCATGTTGACTGGATTGATGGGAACAAGCTCATCCACTT
TATAATCCGAAGTGCAGATGATGTTGACGGCGGATTTGCTGACAGACCAG
GAGATATGCCTGATGTGTTTCACACATTCTTTGCGCTGGCCGGTCTTTCC
CTCATGGGAAACCATAATTTAGCAAAAATCGATGCAGCATGGGCACTGAC
AGAAGATGTCGTTCGTCGATTGAAGGACGCTGACTAA
back to top

protein sequence of Gvermi11737.t1

>Gvermi11737.t1 ID=Gvermi11737.t1|Name=Gvermi11737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=329bp
MDTKKEKAGIVDSFDRNKHVAYIVGLEKKTKTTDALYFTDHKRLSGVYWA
LSSLCLMHELDVLPREPILEYVMSCYHPDVGAFGGNSDQDPHLLYTLSAL
QILAIYDRLDLVNPDQIMNHIVSLQQSDGSFSGDRWGEIDTRFSYCALLC
ARILRRTHMIDVSNAVSYVLSCQNFDGGFGCIAGAESHAGQIFCCVGALC
LAGALDRIEDDEKERLSLWLCERQLPCGGLNGRPDKLEDVCYSWWVLSSL
CMLGHVDWIDGNKLIHFIIRSADDVDGGFADRPGDMPDVFHTFFALAGLS
LMGNHNLAKIDAAWALTEDVVRRLKDAD*
back to top

mRNA from alignment at ScGOVlb_3404:1859822..1860808-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11737.t1 ID=Gvermi11737.t1|Name=Gvermi11737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=987bp|location=Sequence derived from alignment at ScGOVlb_3404:1859822..1860808- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACAAAGAAAGAAAAGGCCGGGATTGTCGACAGCTTTGATCGGAA
CAAACACGTAGCCTACATAGTTGGCCTCGAGAAAAAAACCAAAACTACCG
ATGCACTTTACTTCACGGATCATAAGCGACTGTCTGGGGTGTATTGGGCT
CTATCCTCACTATGTCTCATGCACGAGCTTGATGTTCTTCCCAGAGAACC
CATCTTGGAGTACGTTATGAGTTGCTATCATCCAGATGTGGGTGCCTTTG
GGGGAAACAGTGATCAAGATCCACATTTGCTTTACACTTTGTCCGCCCTT
CAAATTTTAGCCATATATGATCGCCTTGATCTTGTTAATCCAGACCAGAT
TATGAACCACATTGTGTCCTTGCAACAGAGCGATGGCAGCTTTTCTGGTG
ACAGGTGGGGAGAAATTGATACCCGGTTCAGTTACTGTGCTTTACTCTGT
GCGAGAATCCTGAGAAGAACGCATATGATTGATGTATCTAATGCTGTTAG
CTACGTTTTAAGCTGTCAGAACTTTGACGGGGGTTTCGGATGCATTGCAG
GCGCGGAGAGTCATGCAGGTCAGATATTCTGCTGCGTCGGTGCACTTTGT
CTGGCGGGCGCCTTGGATCGTATAGAAGACGATGAAAAAGAACGACTATC
TCTCTGGCTTTGCGAAAGACAACTGCCATGCGGAGGGCTCAACGGTAGAC
CTGACAAACTTGAAGATGTATGTTATTCCTGGTGGGTTTTATCAAGTCTG
TGTATGTTGGGCCATGTTGACTGGATTGATGGGAACAAGCTCATCCACTT
TATAATCCGAAGTGCAGATGATGTTGACGGCGGATTTGCTGACAGACCAG
GAGATATGCCTGATGTGTTTCACACATTCTTTGCGCTGGCCGGTCTTTCC
CTCATGGGAAACCATAATTTAGCAAAAATCGATGCAGCATGGGCACTGAC
AGAAGATGTCGTTCGTCGATTGAAGGACGCTGACTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:1859822..1860808-

>Gvermi11737.t1 ID=Gvermi11737.t1|Name=Gvermi11737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=987bp|location=Sequence derived from alignment at ScGOVlb_3404:1859822..1860808- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACAAAGAAAGAAAAGGCCGGGATTGTCGACAGCTTTGATCGGAA
CAAACACGTAGCCTACATAGTTGGCCTCGAGAAAAAAACCAAAACTACCG
ATGCACTTTACTTCACGGATCATAAGCGACTGTCTGGGGTGTATTGGGCT
CTATCCTCACTATGTCTCATGCACGAGCTTGATGTTCTTCCCAGAGAACC
CATCTTGGAGTACGTTATGAGTTGCTATCATCCAGATGTGGGTGCCTTTG
GGGGAAACAGTGATCAAGATCCACATTTGCTTTACACTTTGTCCGCCCTT
CAAATTTTAGCCATATATGATCGCCTTGATCTTGTTAATCCAGACCAGAT
TATGAACCACATTGTGTCCTTGCAACAGAGCGATGGCAGCTTTTCTGGTG
ACAGGTGGGGAGAAATTGATACCCGGTTCAGTTACTGTGCTTTACTCTGT
GCGAGAATCCTGAGAAGAACGCATATGATTGATGTATCTAATGCTGTTAG
CTACGTTTTAAGCTGTCAGAACTTTGACGGGGGTTTCGGATGCATTGCAG
GCGCGGAGAGTCATGCAGGTCAGATATTCTGCTGCGTCGGTGCACTTTGT
CTGGCGGGCGCCTTGGATCGTATAGAAGACGATGAAAAAGAACGACTATC
TCTCTGGCTTTGCGAAAGACAACTGCCATGCGGAGGGCTCAACGGTAGAC
CTGACAAACTTGAAGATGTATGTTATTCCTGGTGGGTTTTATCAAGTCTG
TGTATGTTGGGCCATGTTGACTGGATTGATGGGAACAAGCTCATCCACTT
TATAATCCGAAGTGCAGATGATGTTGACGGCGGATTTGCTGACAGACCAG
GAGATATGCCTGATGTGTTTCACACATTCTTTGCGCTGGCCGGTCTTTCC
CTCATGGGAAACCATAATTTAGCAAAAATCGATGCAGCATGGGCACTGAC
AGAAGATGTCGTTCGTCGATTGAAGGACGCTGACTAA
back to top