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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1174528.JH992898_gene1440 |
| Preferred name | mfd |
| PFAMs | CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K03723 |
| KEGG Pathway | ko03420,map03420 |
| Evalue | 3.95e-156 |
| EggNOG OGs | COG1197@1|root,COG1197@2|Bacteria,1G1B8@1117|Cyanobacteria,1JHM7@1189|Stigonemataceae |
| Description | TRCF |
| COG category | L |
| BRITE | ko00000,ko00001,ko01000,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11725.t1 ID=Gvermi11725.t1|Name=Gvermi11725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=849bp MAFVSAILRATPHACDHPFFAPRENTAPKPPLTPQQRRLDAKRAERQPPP TYDAEDQRRLQLASENLSADDLASILSVSHSPQATNPHELLPSAKPPKGS SSSSVATTVTEAPVSGVKPFLPESPQVSSPPAKLYSECLVIHSQHGIGRF LGLERTVSTQGAAQEYAVVSYRDGELYVPLSQLERLSPLSPKDAAQVQRL DHMQLDPLFARRRLRSNKSRYLARKRTRANIRRQLVNLHALYAARHQATR KPFPINEGAEKVFAHICPFRLTKDQSVALRQVLNDMSSRETPMDRLLCGD VGFGKTEVALRAAFRAINAGRQVALLAPTTILAHQHYETFKERLQEHYPQ VSISCLTRFVARREILKAREEIRNGTCHIAVGTHMLLNDSVSFSALGLLI VDEEHRFGVNQKEKIRERYKDVDTLSLSATPIPRTLHLALTGLRDTSVLR EAPEGRKPIVTSVCQRGAGPVRRAISAEMRRGGQVFFVVPRVDGIDATAD WLRHLFPTLRVLVAHGQMSDVEHRVWEFASGKYDVLVCTTIIENGINMPD VNTIVVNDATRFGLAQLHQLRGRVGRSKRQAFAWFLYNENGGAKASEAVQ RLKTLELYNQLGSGFQIAQKDMEMRGVGTVLGVEQHGNSSVEAAEYAQML SEELEHIRTGNPIPLTLPVSEMVEVFLPVSSLIPEDFVPDFDQKMAAYST LSAAQSSRELIAIAKSLQARYGTLPPSTIRHISVLDLKLFAKGIGIRRVV SERQHVVLDWAIDEPALKALAAFVRDDSMRARLEHLVFEERVLVRGLGVC SGDVQLAKLRSLLRVFSKAAKEWPRRGSPAEGTTKKPSLVEILHDSFK* back to topspliced messenger RNA >Gvermi11725.t1 ID=Gvermi11725.t1|Name=Gvermi11725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2547bp|location=Sequence derived from alignment at ScGOVlb_3404:1822063..1824609+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTTTGTGAGCGCCATCCTTCGCGCCACTCCTCACGCATGCGATCA CCCCTTTTTCGCTCCTCGCGAGAATACTGCCCCAAAGCCACCTCTCACTC CTCAACAGCGGCGCTTAGACGCCAAACGTGCCGAGCGTCAACCTCCCCCG ACCTATGATGCTGAAGACCAACGCCGCCTTCAGCTTGCCTCTGAGAATTT GAGCGCCGATGACCTCGCCAGCATCCTAAGTGTCTCGCACTCGCCTCAAG CAACAAATCCGCATGAGTTACTACCTTCCGCCAAGCCGCCAAAGGGCTCA TCTTCCTCGTCAGTCGCAACCACCGTGACGGAAGCTCCAGTGTCTGGCGT TAAGCCGTTTCTCCCTGAATCGCCGCAAGTATCGTCACCGCCTGCGAAGC TTTACTCAGAGTGTCTTGTGATCCATTCTCAACATGGCATTGGTCGTTTT CTCGGTCTTGAGCGCACGGTGAGCACTCAAGGGGCAGCGCAAGAGTATGC CGTCGTATCGTATCGCGATGGTGAATTGTACGTTCCCCTTAGCCAACTTG AGCGCTTGAGCCCCTTGTCCCCTAAAGACGCGGCTCAAGTCCAACGCTTA GATCATATGCAACTTGACCCGTTGTTCGCACGTCGTCGGTTGCGCTCAAA CAAGTCTCGATATTTAGCTCGTAAACGCACACGAGCAAACATTCGACGCC AACTTGTTAACTTGCATGCATTGTATGCCGCTCGACATCAGGCCACCCGA AAGCCGTTTCCCATAAATGAAGGCGCAGAGAAAGTCTTCGCGCACATATG TCCTTTCCGATTAACTAAAGATCAGAGTGTGGCCCTCAGGCAGGTTCTCA ACGATATGAGTTCACGGGAAACACCTATGGACCGCCTTTTGTGCGGTGAC GTTGGCTTCGGCAAGACTGAAGTTGCACTTCGAGCAGCATTTCGTGCGAT AAATGCTGGCAGGCAGGTGGCCCTGTTGGCCCCAACTACAATTCTTGCGC ATCAGCATTATGAAACCTTCAAAGAACGTTTGCAAGAGCATTATCCCCAA GTTTCCATCTCATGTCTTACGCGCTTTGTTGCGAGACGAGAAATTCTCAA GGCAAGAGAAGAAATACGCAATGGAACATGCCACATTGCCGTTGGAACTC ATATGCTGTTGAACGATTCTGTATCTTTTTCAGCTCTGGGTCTTCTCATC GTGGACGAGGAACACCGGTTTGGGGTCAACCAAAAGGAAAAGATCCGAGA ACGGTACAAAGACGTAGACACGCTGTCTTTGTCTGCAACTCCTATACCGC GCACTCTGCACCTCGCGCTTACCGGTTTACGAGACACCTCCGTTCTTCGC GAAGCGCCTGAAGGCCGCAAACCGATCGTTACAAGCGTATGTCAGAGAGG CGCTGGACCTGTACGTCGTGCCATTTCTGCGGAAATGCGTCGAGGAGGTC AGGTATTTTTCGTCGTCCCTAGAGTTGACGGGATTGATGCTACTGCCGAC TGGCTCCGCCATCTCTTTCCAACACTACGAGTGCTCGTTGCACATGGTCA GATGTCAGATGTCGAACATCGCGTTTGGGAATTTGCTTCCGGAAAGTACG ATGTGCTTGTGTGCACAACTATTATCGAGAATGGCATCAACATGCCGGAT GTGAACACCATCGTCGTAAACGATGCGACACGCTTTGGTCTGGCTCAGTT ACATCAACTGCGCGGCAGGGTTGGCCGAAGCAAACGCCAAGCCTTCGCGT GGTTCTTGTATAATGAAAATGGTGGTGCTAAAGCCTCCGAAGCCGTGCAG CGTCTCAAGACCCTGGAGCTCTACAATCAGCTCGGGTCAGGCTTTCAGAT AGCACAAAAAGATATGGAAATGAGGGGAGTTGGAACAGTTCTGGGTGTTG AACAGCACGGCAACAGCTCCGTCGAGGCTGCAGAATACGCACAGATGCTT TCAGAAGAGCTCGAGCACATTCGCACTGGCAATCCGATCCCGTTGACATT ACCTGTCTCAGAAATGGTAGAAGTTTTCCTTCCTGTGTCATCACTTATTC CTGAAGACTTCGTTCCTGACTTTGATCAAAAGATGGCCGCATATAGCACT TTGTCCGCCGCCCAAAGTTCCAGGGAGCTTATCGCGATTGCTAAGAGTTT ACAGGCACGGTATGGAACTTTACCACCATCCACGATCCGGCACATTTCTG TTCTGGATTTAAAGCTGTTCGCTAAGGGAATTGGTATCCGCCGCGTAGTA TCAGAGAGGCAGCATGTAGTCCTGGATTGGGCCATCGATGAACCTGCTTT GAAGGCGTTGGCAGCGTTTGTAAGAGATGATTCAATGCGAGCAAGGCTGG AACACTTAGTGTTTGAAGAAAGAGTGTTGGTGAGAGGCTTAGGTGTATGT TCCGGGGATGTGCAACTGGCTAAATTACGGAGTTTGTTGAGGGTCTTTAG TAAGGCTGCGAAAGAGTGGCCAAGACGGGGTAGCCCCGCAGAGGGTACTA CAAAGAAGCCCAGTCTTGTCGAAATTTTGCATGATTCATTCAAATAA back to topprotein sequence of Gvermi11725.t1 >Gvermi11725.t1 ID=Gvermi11725.t1|Name=Gvermi11725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=849bp
MAFVSAILRATPHACDHPFFAPRENTAPKPPLTPQQRRLDAKRAERQPPP TYDAEDQRRLQLASENLSADDLASILSVSHSPQATNPHELLPSAKPPKGS SSSSVATTVTEAPVSGVKPFLPESPQVSSPPAKLYSECLVIHSQHGIGRF LGLERTVSTQGAAQEYAVVSYRDGELYVPLSQLERLSPLSPKDAAQVQRL DHMQLDPLFARRRLRSNKSRYLARKRTRANIRRQLVNLHALYAARHQATR KPFPINEGAEKVFAHICPFRLTKDQSVALRQVLNDMSSRETPMDRLLCGD VGFGKTEVALRAAFRAINAGRQVALLAPTTILAHQHYETFKERLQEHYPQ VSISCLTRFVARREILKAREEIRNGTCHIAVGTHMLLNDSVSFSALGLLI VDEEHRFGVNQKEKIRERYKDVDTLSLSATPIPRTLHLALTGLRDTSVLR EAPEGRKPIVTSVCQRGAGPVRRAISAEMRRGGQVFFVVPRVDGIDATAD WLRHLFPTLRVLVAHGQMSDVEHRVWEFASGKYDVLVCTTIIENGINMPD VNTIVVNDATRFGLAQLHQLRGRVGRSKRQAFAWFLYNENGGAKASEAVQ RLKTLELYNQLGSGFQIAQKDMEMRGVGTVLGVEQHGNSSVEAAEYAQML SEELEHIRTGNPIPLTLPVSEMVEVFLPVSSLIPEDFVPDFDQKMAAYST LSAAQSSRELIAIAKSLQARYGTLPPSTIRHISVLDLKLFAKGIGIRRVV SERQHVVLDWAIDEPALKALAAFVRDDSMRARLEHLVFEERVLVRGLGVC SGDVQLAKLRSLLRVFSKAAKEWPRRGSPAEGTTKKPSLVEILHDSFK* back to topmRNA from alignment at ScGOVlb_3404:1822063..1824609+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11725.t1 ID=Gvermi11725.t1|Name=Gvermi11725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2547bp|location=Sequence derived from alignment at ScGOVlb_3404:1822063..1824609+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCGTTTGTGAGCGCCATCCTTCGCGCCACTCCTCACGCATGCGATCA
CCCCTTTTTCGCTCCTCGCGAGAATACTGCCCCAAAGCCACCTCTCACTC
CTCAACAGCGGCGCTTAGACGCCAAACGTGCCGAGCGTCAACCTCCCCCG
ACCTATGATGCTGAAGACCAACGCCGCCTTCAGCTTGCCTCTGAGAATTT
GAGCGCCGATGACCTCGCCAGCATCCTAAGTGTCTCGCACTCGCCTCAAG
CAACAAATCCGCATGAGTTACTACCTTCCGCCAAGCCGCCAAAGGGCTCA
TCTTCCTCGTCAGTCGCAACCACCGTGACGGAAGCTCCAGTGTCTGGCGT
TAAGCCGTTTCTCCCTGAATCGCCGCAAGTATCGTCACCGCCTGCGAAGC
TTTACTCAGAGTGTCTTGTGATCCATTCTCAACATGGCATTGGTCGTTTT
CTCGGTCTTGAGCGCACGGTGAGCACTCAAGGGGCAGCGCAAGAGTATGC
CGTCGTATCGTATCGCGATGGTGAATTGTACGTTCCCCTTAGCCAACTTG
AGCGCTTGAGCCCCTTGTCCCCTAAAGACGCGGCTCAAGTCCAACGCTTA
GATCATATGCAACTTGACCCGTTGTTCGCACGTCGTCGGTTGCGCTCAAA
CAAGTCTCGATATTTAGCTCGTAAACGCACACGAGCAAACATTCGACGCC
AACTTGTTAACTTGCATGCATTGTATGCCGCTCGACATCAGGCCACCCGA
AAGCCGTTTCCCATAAATGAAGGCGCAGAGAAAGTCTTCGCGCACATATG
TCCTTTCCGATTAACTAAAGATCAGAGTGTGGCCCTCAGGCAGGTTCTCA
ACGATATGAGTTCACGGGAAACACCTATGGACCGCCTTTTGTGCGGTGAC
GTTGGCTTCGGCAAGACTGAAGTTGCACTTCGAGCAGCATTTCGTGCGAT
AAATGCTGGCAGGCAGGTGGCCCTGTTGGCCCCAACTACAATTCTTGCGC
ATCAGCATTATGAAACCTTCAAAGAACGTTTGCAAGAGCATTATCCCCAA
GTTTCCATCTCATGTCTTACGCGCTTTGTTGCGAGACGAGAAATTCTCAA
GGCAAGAGAAGAAATACGCAATGGAACATGCCACATTGCCGTTGGAACTC
ATATGCTGTTGAACGATTCTGTATCTTTTTCAGCTCTGGGTCTTCTCATC
GTGGACGAGGAACACCGGTTTGGGGTCAACCAAAAGGAAAAGATCCGAGA
ACGGTACAAAGACGTAGACACGCTGTCTTTGTCTGCAACTCCTATACCGC
GCACTCTGCACCTCGCGCTTACCGGTTTACGAGACACCTCCGTTCTTCGC
GAAGCGCCTGAAGGCCGCAAACCGATCGTTACAAGCGTATGTCAGAGAGG
CGCTGGACCTGTACGTCGTGCCATTTCTGCGGAAATGCGTCGAGGAGGTC
AGGTATTTTTCGTCGTCCCTAGAGTTGACGGGATTGATGCTACTGCCGAC
TGGCTCCGCCATCTCTTTCCAACACTACGAGTGCTCGTTGCACATGGTCA
GATGTCAGATGTCGAACATCGCGTTTGGGAATTTGCTTCCGGAAAGTACG
ATGTGCTTGTGTGCACAACTATTATCGAGAATGGCATCAACATGCCGGAT
GTGAACACCATCGTCGTAAACGATGCGACACGCTTTGGTCTGGCTCAGTT
ACATCAACTGCGCGGCAGGGTTGGCCGAAGCAAACGCCAAGCCTTCGCGT
GGTTCTTGTATAATGAAAATGGTGGTGCTAAAGCCTCCGAAGCCGTGCAG
CGTCTCAAGACCCTGGAGCTCTACAATCAGCTCGGGTCAGGCTTTCAGAT
AGCACAAAAAGATATGGAAATGAGGGGAGTTGGAACAGTTCTGGGTGTTG
AACAGCACGGCAACAGCTCCGTCGAGGCTGCAGAATACGCACAGATGCTT
TCAGAAGAGCTCGAGCACATTCGCACTGGCAATCCGATCCCGTTGACATT
ACCTGTCTCAGAAATGGTAGAAGTTTTCCTTCCTGTGTCATCACTTATTC
CTGAAGACTTCGTTCCTGACTTTGATCAAAAGATGGCCGCATATAGCACT
TTGTCCGCCGCCCAAAGTTCCAGGGAGCTTATCGCGATTGCTAAGAGTTT
ACAGGCACGGTATGGAACTTTACCACCATCCACGATCCGGCACATTTCTG
TTCTGGATTTAAAGCTGTTCGCTAAGGGAATTGGTATCCGCCGCGTAGTA
TCAGAGAGGCAGCATGTAGTCCTGGATTGGGCCATCGATGAACCTGCTTT
GAAGGCGTTGGCAGCGTTTGTAAGAGATGATTCAATGCGAGCAAGGCTGG
AACACTTAGTGTTTGAAGAAAGAGTGTTGGTGAGAGGCTTAGGTGTATGT
TCCGGGGATGTGCAACTGGCTAAATTACGGAGTTTGTTGAGGGTCTTTAG
TAAGGCTGCGAAAGAGTGGCCAAGACGGGGTAGCCCCGCAGAGGGTACTA
CAAAGAAGCCCAGTCTTGTCGAAATTTTGCATGATTCATTCAAATAA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:1822063..1824609+ >Gvermi11725.t1 ID=Gvermi11725.t1|Name=Gvermi11725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2547bp|location=Sequence derived from alignment at ScGOVlb_3404:1822063..1824609+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCGTTTGTGAGCGCCATCCTTCGCGCCACTCCTCACGCATGCGATCA CCCCTTTTTCGCTCCTCGCGAGAATACTGCCCCAAAGCCACCTCTCACTC CTCAACAGCGGCGCTTAGACGCCAAACGTGCCGAGCGTCAACCTCCCCCG ACCTATGATGCTGAAGACCAACGCCGCCTTCAGCTTGCCTCTGAGAATTT GAGCGCCGATGACCTCGCCAGCATCCTAAGTGTCTCGCACTCGCCTCAAG CAACAAATCCGCATGAGTTACTACCTTCCGCCAAGCCGCCAAAGGGCTCA TCTTCCTCGTCAGTCGCAACCACCGTGACGGAAGCTCCAGTGTCTGGCGT TAAGCCGTTTCTCCCTGAATCGCCGCAAGTATCGTCACCGCCTGCGAAGC TTTACTCAGAGTGTCTTGTGATCCATTCTCAACATGGCATTGGTCGTTTT CTCGGTCTTGAGCGCACGGTGAGCACTCAAGGGGCAGCGCAAGAGTATGC CGTCGTATCGTATCGCGATGGTGAATTGTACGTTCCCCTTAGCCAACTTG AGCGCTTGAGCCCCTTGTCCCCTAAAGACGCGGCTCAAGTCCAACGCTTA GATCATATGCAACTTGACCCGTTGTTCGCACGTCGTCGGTTGCGCTCAAA CAAGTCTCGATATTTAGCTCGTAAACGCACACGAGCAAACATTCGACGCC AACTTGTTAACTTGCATGCATTGTATGCCGCTCGACATCAGGCCACCCGA AAGCCGTTTCCCATAAATGAAGGCGCAGAGAAAGTCTTCGCGCACATATG TCCTTTCCGATTAACTAAAGATCAGAGTGTGGCCCTCAGGCAGGTTCTCA ACGATATGAGTTCACGGGAAACACCTATGGACCGCCTTTTGTGCGGTGAC GTTGGCTTCGGCAAGACTGAAGTTGCACTTCGAGCAGCATTTCGTGCGAT AAATGCTGGCAGGCAGGTGGCCCTGTTGGCCCCAACTACAATTCTTGCGC ATCAGCATTATGAAACCTTCAAAGAACGTTTGCAAGAGCATTATCCCCAA GTTTCCATCTCATGTCTTACGCGCTTTGTTGCGAGACGAGAAATTCTCAA GGCAAGAGAAGAAATACGCAATGGAACATGCCACATTGCCGTTGGAACTC ATATGCTGTTGAACGATTCTGTATCTTTTTCAGCTCTGGGTCTTCTCATC GTGGACGAGGAACACCGGTTTGGGGTCAACCAAAAGGAAAAGATCCGAGA ACGGTACAAAGACGTAGACACGCTGTCTTTGTCTGCAACTCCTATACCGC GCACTCTGCACCTCGCGCTTACCGGTTTACGAGACACCTCCGTTCTTCGC GAAGCGCCTGAAGGCCGCAAACCGATCGTTACAAGCGTATGTCAGAGAGG CGCTGGACCTGTACGTCGTGCCATTTCTGCGGAAATGCGTCGAGGAGGTC AGGTATTTTTCGTCGTCCCTAGAGTTGACGGGATTGATGCTACTGCCGAC TGGCTCCGCCATCTCTTTCCAACACTACGAGTGCTCGTTGCACATGGTCA GATGTCAGATGTCGAACATCGCGTTTGGGAATTTGCTTCCGGAAAGTACG ATGTGCTTGTGTGCACAACTATTATCGAGAATGGCATCAACATGCCGGAT GTGAACACCATCGTCGTAAACGATGCGACACGCTTTGGTCTGGCTCAGTT ACATCAACTGCGCGGCAGGGTTGGCCGAAGCAAACGCCAAGCCTTCGCGT GGTTCTTGTATAATGAAAATGGTGGTGCTAAAGCCTCCGAAGCCGTGCAG CGTCTCAAGACCCTGGAGCTCTACAATCAGCTCGGGTCAGGCTTTCAGAT AGCACAAAAAGATATGGAAATGAGGGGAGTTGGAACAGTTCTGGGTGTTG AACAGCACGGCAACAGCTCCGTCGAGGCTGCAGAATACGCACAGATGCTT TCAGAAGAGCTCGAGCACATTCGCACTGGCAATCCGATCCCGTTGACATT ACCTGTCTCAGAAATGGTAGAAGTTTTCCTTCCTGTGTCATCACTTATTC CTGAAGACTTCGTTCCTGACTTTGATCAAAAGATGGCCGCATATAGCACT TTGTCCGCCGCCCAAAGTTCCAGGGAGCTTATCGCGATTGCTAAGAGTTT ACAGGCACGGTATGGAACTTTACCACCATCCACGATCCGGCACATTTCTG TTCTGGATTTAAAGCTGTTCGCTAAGGGAATTGGTATCCGCCGCGTAGTA TCAGAGAGGCAGCATGTAGTCCTGGATTGGGCCATCGATGAACCTGCTTT GAAGGCGTTGGCAGCGTTTGTAAGAGATGATTCAATGCGAGCAAGGCTGG AACACTTAGTGTTTGAAGAAAGAGTGTTGGTGAGAGGCTTAGGTGTATGT TCCGGGGATGTGCAACTGGCTAAATTACGGAGTTTGTTGAGGGTCTTTAG TAAGGCTGCGAAAGAGTGGCCAAGACGGGGTAGCCCCGCAGAGGGTACTA CAAAGAAGCCCAGTCTTGTCGAAATTTTGCATGATTCATTCAAATAA back to top
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