Gvermi11723.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11723.t1
Unique NameGvermi11723.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length739
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1817068..1819284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005847419.1
PFAMs2OG-FeII_Oxy_3
Max annot lvl3041|Chlorophyta
Evalue7.07e-22
EggNOG OGs2C14X@1|root,2S2NY@2759|Eukaryota,37V9W@33090|Viridiplantae,34M6R@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11723Gvermi11723Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1817068..1819284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11723.t1.stop1Gvermi11723.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1817068..1817070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11723.t1.CDS1Gvermi11723.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1817068..1819284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11723.t1.exon1Gvermi11723.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1817068..1819284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11723.t1.start1Gvermi11723.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1819282..1819284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11723.t1Gvermi11723.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1817068..1819284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11723.t1 ID=Gvermi11723.t1|Name=Gvermi11723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=739bp
MTSYDYQSQPEFRVSHVGRVTLPLQQVQLSSLSAVSEQLELAPGSHFHDK
HPTISRLQIDAENVQFSIDDRSFISSLARELVTGLDVSPFCLCTKLDKLV
IHGKHGYSEPYKQTEAELGTFATVILQLPALYRGGQLQVCHDGQTMTFDM
SDQSHCKVYCAMFFNHCHHERLPVTSGYCLSLVYRVSHRAPGPLPSMSNR
CSVSYMLREAAALWEAMPRKSRPKLFAIPLEHNYRLNEFSFTNLQGLDAK
RADQIKATGKYSMFLIMTEKRERGYVPKNPGARYFYESPHDEDAVQNRDT
FNPVHAMKEVQEQHFEVIKFVKENGREVKLKDLWEAGEEPISEMDFLNKQ
GLFENSKPHAESYDAFVRRRVAPLQFSYRAAALIFWPQAFHVDFFCSKGF
STGVKYVVQAYENRDADARRLLRQIVDYGKDNLLDDNDGALMLLNFACTI
KDVTLARHALDFMLHVKKDHTIEAVLPMLQSEEGCSSSDHCSSFLKAIRT
FDWEPIREATLNAIRVTPSDLFDYCFSLVHSMSKENYPAKAKNDIKRAVA
LAIPSKSLADSNLPDAADVLFSLPCLTTEQRKFMRQLRDRSVESMALLLE
SLHVMILEDGIDCGAAKAFAHIVPMFIRKEFDSSRRASRSGFKDMLRSYV
SMYGLADPENIKNLRYSRSSALVFSLLVDNRTMDVNLLKQFIYAALASRR
RKLLSILVQLIPSETPTNPSVNEILNALRTFNVSTLRE*
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spliced messenger RNA

>Gvermi11723.t1 ID=Gvermi11723.t1|Name=Gvermi11723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at ScGOVlb_3404:1817068..1819284- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTTATGACTATCAATCGCAACCAGAGTTTAGAGTTTCTCATGT
GGGACGTGTAACACTACCATTACAACAAGTTCAGCTATCCAGCCTGAGCG
CTGTTAGTGAGCAGCTAGAGCTTGCTCCTGGGTCACACTTCCATGACAAA
CACCCTACCATCAGTCGCCTCCAAATCGACGCTGAGAATGTTCAATTTAG
TATAGATGACAGATCTTTCATCTCCAGTTTGGCTCGCGAGCTAGTTACAG
GTCTTGACGTGAGCCCATTCTGCCTATGTACCAAACTCGATAAACTTGTC
ATTCACGGAAAGCATGGCTATAGCGAACCTTACAAACAAACGGAAGCCGA
GCTGGGTACTTTTGCGACCGTTATTCTACAATTGCCGGCCTTGTACCGCG
GCGGCCAACTTCAGGTTTGCCATGATGGACAGACAATGACCTTCGACATG
AGTGACCAAAGTCACTGCAAAGTGTACTGCGCTATGTTCTTTAATCATTG
TCACCATGAGCGCCTTCCAGTAACCTCTGGGTATTGTCTTTCGTTGGTCT
ATAGAGTAAGTCACCGGGCTCCAGGGCCGCTCCCCAGCATGTCCAATCGA
TGCAGTGTATCGTACATGCTCAGGGAAGCGGCAGCTCTTTGGGAAGCTAT
GCCAAGGAAATCGCGACCAAAGCTGTTTGCGATTCCCTTGGAACACAACT
ACAGGTTGAATGAATTCTCCTTTACAAATCTCCAAGGACTTGATGCGAAG
CGCGCAGATCAGATAAAAGCAACTGGGAAGTACTCCATGTTTCTGATTAT
GACGGAGAAAAGAGAAAGAGGCTATGTACCAAAGAATCCTGGTGCACGCT
ATTTCTACGAGTCCCCTCATGATGAAGATGCTGTGCAAAATCGTGACACT
TTTAATCCCGTTCATGCGATGAAAGAAGTTCAAGAACAGCATTTCGAAGT
CATAAAGTTTGTTAAAGAAAATGGTCGAGAAGTTAAGCTTAAAGATCTCT
GGGAGGCTGGAGAAGAACCGATCAGCGAGATGGACTTCCTCAACAAACAA
GGTCTTTTTGAAAATTCCAAACCACACGCAGAATCTTACGATGCTTTCGT
ACGAAGACGGGTGGCTCCTTTACAGTTCTCGTATCGCGCAGCGGCTCTAA
TTTTCTGGCCACAAGCTTTCCACGTAGACTTCTTCTGTTCTAAAGGTTTC
AGCACTGGAGTCAAATATGTTGTGCAGGCCTACGAGAACCGCGATGCTGA
CGCTCGCCGCCTACTTAGACAGATCGTTGATTACGGAAAAGACAACCTAT
TGGACGATAACGATGGCGCGCTCATGTTACTAAACTTTGCGTGTACTATC
AAAGACGTTACTCTTGCCAGACATGCCTTGGACTTTATGCTCCATGTTAA
GAAGGACCATACAATCGAAGCTGTTCTCCCAATGCTTCAATCGGAAGAAG
GATGCTCAAGCTCGGACCATTGCTCTAGCTTTCTGAAAGCTATCCGCACA
TTTGACTGGGAGCCAATTCGTGAAGCAACGCTGAACGCCATAAGGGTGAC
CCCATCCGACTTATTTGATTACTGTTTTTCTCTTGTGCATAGTATGTCGA
AGGAGAACTATCCCGCTAAAGCCAAAAACGATATAAAGAGAGCAGTGGCT
CTCGCTATTCCTTCAAAATCATTGGCGGATTCGAACCTACCAGATGCTGC
CGACGTTTTATTTTCACTTCCGTGTCTTACAACCGAGCAACGAAAGTTTA
TGAGACAGCTCAGAGACCGTTCAGTTGAAAGCATGGCCCTCTTGCTTGAA
AGCCTTCATGTTATGATTCTTGAGGACGGTATAGACTGCGGTGCGGCAAA
GGCTTTTGCTCACATCGTGCCAATGTTTATTCGAAAGGAATTTGATTCAT
CCCGACGGGCCTCAAGAAGTGGTTTCAAGGATATGTTGAGGTCTTATGTT
TCAATGTATGGTCTGGCTGACCCAGAAAATATCAAGAACTTACGATACTC
ACGTTCTAGTGCGTTAGTCTTTTCTTTGCTGGTAGACAATAGGACAATGG
ATGTGAACTTGCTCAAACAATTCATTTATGCGGCTTTGGCATCAAGAAGA
AGAAAATTATTGAGCATTCTAGTTCAACTAATACCTTCTGAGACACCAAC
AAACCCTTCTGTGAATGAAATACTAAACGCTCTACGGACATTTAACGTTT
CGACCCTCCGCGAATAG
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protein sequence of Gvermi11723.t1

>Gvermi11723.t1 ID=Gvermi11723.t1|Name=Gvermi11723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=739bp
MTSYDYQSQPEFRVSHVGRVTLPLQQVQLSSLSAVSEQLELAPGSHFHDK
HPTISRLQIDAENVQFSIDDRSFISSLARELVTGLDVSPFCLCTKLDKLV
IHGKHGYSEPYKQTEAELGTFATVILQLPALYRGGQLQVCHDGQTMTFDM
SDQSHCKVYCAMFFNHCHHERLPVTSGYCLSLVYRVSHRAPGPLPSMSNR
CSVSYMLREAAALWEAMPRKSRPKLFAIPLEHNYRLNEFSFTNLQGLDAK
RADQIKATGKYSMFLIMTEKRERGYVPKNPGARYFYESPHDEDAVQNRDT
FNPVHAMKEVQEQHFEVIKFVKENGREVKLKDLWEAGEEPISEMDFLNKQ
GLFENSKPHAESYDAFVRRRVAPLQFSYRAAALIFWPQAFHVDFFCSKGF
STGVKYVVQAYENRDADARRLLRQIVDYGKDNLLDDNDGALMLLNFACTI
KDVTLARHALDFMLHVKKDHTIEAVLPMLQSEEGCSSSDHCSSFLKAIRT
FDWEPIREATLNAIRVTPSDLFDYCFSLVHSMSKENYPAKAKNDIKRAVA
LAIPSKSLADSNLPDAADVLFSLPCLTTEQRKFMRQLRDRSVESMALLLE
SLHVMILEDGIDCGAAKAFAHIVPMFIRKEFDSSRRASRSGFKDMLRSYV
SMYGLADPENIKNLRYSRSSALVFSLLVDNRTMDVNLLKQFIYAALASRR
RKLLSILVQLIPSETPTNPSVNEILNALRTFNVSTLRE*
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mRNA from alignment at ScGOVlb_3404:1817068..1819284-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11723.t1 ID=Gvermi11723.t1|Name=Gvermi11723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at ScGOVlb_3404:1817068..1819284- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCTTATGACTATCAATCGCAACCAGAGTTTAGAGTTTCTCATGT
GGGACGTGTAACACTACCATTACAACAAGTTCAGCTATCCAGCCTGAGCG
CTGTTAGTGAGCAGCTAGAGCTTGCTCCTGGGTCACACTTCCATGACAAA
CACCCTACCATCAGTCGCCTCCAAATCGACGCTGAGAATGTTCAATTTAG
TATAGATGACAGATCTTTCATCTCCAGTTTGGCTCGCGAGCTAGTTACAG
GTCTTGACGTGAGCCCATTCTGCCTATGTACCAAACTCGATAAACTTGTC
ATTCACGGAAAGCATGGCTATAGCGAACCTTACAAACAAACGGAAGCCGA
GCTGGGTACTTTTGCGACCGTTATTCTACAATTGCCGGCCTTGTACCGCG
GCGGCCAACTTCAGGTTTGCCATGATGGACAGACAATGACCTTCGACATG
AGTGACCAAAGTCACTGCAAAGTGTACTGCGCTATGTTCTTTAATCATTG
TCACCATGAGCGCCTTCCAGTAACCTCTGGGTATTGTCTTTCGTTGGTCT
ATAGAGTAAGTCACCGGGCTCCAGGGCCGCTCCCCAGCATGTCCAATCGA
TGCAGTGTATCGTACATGCTCAGGGAAGCGGCAGCTCTTTGGGAAGCTAT
GCCAAGGAAATCGCGACCAAAGCTGTTTGCGATTCCCTTGGAACACAACT
ACAGGTTGAATGAATTCTCCTTTACAAATCTCCAAGGACTTGATGCGAAG
CGCGCAGATCAGATAAAAGCAACTGGGAAGTACTCCATGTTTCTGATTAT
GACGGAGAAAAGAGAAAGAGGCTATGTACCAAAGAATCCTGGTGCACGCT
ATTTCTACGAGTCCCCTCATGATGAAGATGCTGTGCAAAATCGTGACACT
TTTAATCCCGTTCATGCGATGAAAGAAGTTCAAGAACAGCATTTCGAAGT
CATAAAGTTTGTTAAAGAAAATGGTCGAGAAGTTAAGCTTAAAGATCTCT
GGGAGGCTGGAGAAGAACCGATCAGCGAGATGGACTTCCTCAACAAACAA
GGTCTTTTTGAAAATTCCAAACCACACGCAGAATCTTACGATGCTTTCGT
ACGAAGACGGGTGGCTCCTTTACAGTTCTCGTATCGCGCAGCGGCTCTAA
TTTTCTGGCCACAAGCTTTCCACGTAGACTTCTTCTGTTCTAAAGGTTTC
AGCACTGGAGTCAAATATGTTGTGCAGGCCTACGAGAACCGCGATGCTGA
CGCTCGCCGCCTACTTAGACAGATCGTTGATTACGGAAAAGACAACCTAT
TGGACGATAACGATGGCGCGCTCATGTTACTAAACTTTGCGTGTACTATC
AAAGACGTTACTCTTGCCAGACATGCCTTGGACTTTATGCTCCATGTTAA
GAAGGACCATACAATCGAAGCTGTTCTCCCAATGCTTCAATCGGAAGAAG
GATGCTCAAGCTCGGACCATTGCTCTAGCTTTCTGAAAGCTATCCGCACA
TTTGACTGGGAGCCAATTCGTGAAGCAACGCTGAACGCCATAAGGGTGAC
CCCATCCGACTTATTTGATTACTGTTTTTCTCTTGTGCATAGTATGTCGA
AGGAGAACTATCCCGCTAAAGCCAAAAACGATATAAAGAGAGCAGTGGCT
CTCGCTATTCCTTCAAAATCATTGGCGGATTCGAACCTACCAGATGCTGC
CGACGTTTTATTTTCACTTCCGTGTCTTACAACCGAGCAACGAAAGTTTA
TGAGACAGCTCAGAGACCGTTCAGTTGAAAGCATGGCCCTCTTGCTTGAA
AGCCTTCATGTTATGATTCTTGAGGACGGTATAGACTGCGGTGCGGCAAA
GGCTTTTGCTCACATCGTGCCAATGTTTATTCGAAAGGAATTTGATTCAT
CCCGACGGGCCTCAAGAAGTGGTTTCAAGGATATGTTGAGGTCTTATGTT
TCAATGTATGGTCTGGCTGACCCAGAAAATATCAAGAACTTACGATACTC
ACGTTCTAGTGCGTTAGTCTTTTCTTTGCTGGTAGACAATAGGACAATGG
ATGTGAACTTGCTCAAACAATTCATTTATGCGGCTTTGGCATCAAGAAGA
AGAAAATTATTGAGCATTCTAGTTCAACTAATACCTTCTGAGACACCAAC
AAACCCTTCTGTGAATGAAATACTAAACGCTCTACGGACATTTAACGTTT
CGACCCTCCGCGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1817068..1819284-

>Gvermi11723.t1 ID=Gvermi11723.t1|Name=Gvermi11723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2217bp|location=Sequence derived from alignment at ScGOVlb_3404:1817068..1819284- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCTTATGACTATCAATCGCAACCAGAGTTTAGAGTTTCTCATGT
GGGACGTGTAACACTACCATTACAACAAGTTCAGCTATCCAGCCTGAGCG
CTGTTAGTGAGCAGCTAGAGCTTGCTCCTGGGTCACACTTCCATGACAAA
CACCCTACCATCAGTCGCCTCCAAATCGACGCTGAGAATGTTCAATTTAG
TATAGATGACAGATCTTTCATCTCCAGTTTGGCTCGCGAGCTAGTTACAG
GTCTTGACGTGAGCCCATTCTGCCTATGTACCAAACTCGATAAACTTGTC
ATTCACGGAAAGCATGGCTATAGCGAACCTTACAAACAAACGGAAGCCGA
GCTGGGTACTTTTGCGACCGTTATTCTACAATTGCCGGCCTTGTACCGCG
GCGGCCAACTTCAGGTTTGCCATGATGGACAGACAATGACCTTCGACATG
AGTGACCAAAGTCACTGCAAAGTGTACTGCGCTATGTTCTTTAATCATTG
TCACCATGAGCGCCTTCCAGTAACCTCTGGGTATTGTCTTTCGTTGGTCT
ATAGAGTAAGTCACCGGGCTCCAGGGCCGCTCCCCAGCATGTCCAATCGA
TGCAGTGTATCGTACATGCTCAGGGAAGCGGCAGCTCTTTGGGAAGCTAT
GCCAAGGAAATCGCGACCAAAGCTGTTTGCGATTCCCTTGGAACACAACT
ACAGGTTGAATGAATTCTCCTTTACAAATCTCCAAGGACTTGATGCGAAG
CGCGCAGATCAGATAAAAGCAACTGGGAAGTACTCCATGTTTCTGATTAT
GACGGAGAAAAGAGAAAGAGGCTATGTACCAAAGAATCCTGGTGCACGCT
ATTTCTACGAGTCCCCTCATGATGAAGATGCTGTGCAAAATCGTGACACT
TTTAATCCCGTTCATGCGATGAAAGAAGTTCAAGAACAGCATTTCGAAGT
CATAAAGTTTGTTAAAGAAAATGGTCGAGAAGTTAAGCTTAAAGATCTCT
GGGAGGCTGGAGAAGAACCGATCAGCGAGATGGACTTCCTCAACAAACAA
GGTCTTTTTGAAAATTCCAAACCACACGCAGAATCTTACGATGCTTTCGT
ACGAAGACGGGTGGCTCCTTTACAGTTCTCGTATCGCGCAGCGGCTCTAA
TTTTCTGGCCACAAGCTTTCCACGTAGACTTCTTCTGTTCTAAAGGTTTC
AGCACTGGAGTCAAATATGTTGTGCAGGCCTACGAGAACCGCGATGCTGA
CGCTCGCCGCCTACTTAGACAGATCGTTGATTACGGAAAAGACAACCTAT
TGGACGATAACGATGGCGCGCTCATGTTACTAAACTTTGCGTGTACTATC
AAAGACGTTACTCTTGCCAGACATGCCTTGGACTTTATGCTCCATGTTAA
GAAGGACCATACAATCGAAGCTGTTCTCCCAATGCTTCAATCGGAAGAAG
GATGCTCAAGCTCGGACCATTGCTCTAGCTTTCTGAAAGCTATCCGCACA
TTTGACTGGGAGCCAATTCGTGAAGCAACGCTGAACGCCATAAGGGTGAC
CCCATCCGACTTATTTGATTACTGTTTTTCTCTTGTGCATAGTATGTCGA
AGGAGAACTATCCCGCTAAAGCCAAAAACGATATAAAGAGAGCAGTGGCT
CTCGCTATTCCTTCAAAATCATTGGCGGATTCGAACCTACCAGATGCTGC
CGACGTTTTATTTTCACTTCCGTGTCTTACAACCGAGCAACGAAAGTTTA
TGAGACAGCTCAGAGACCGTTCAGTTGAAAGCATGGCCCTCTTGCTTGAA
AGCCTTCATGTTATGATTCTTGAGGACGGTATAGACTGCGGTGCGGCAAA
GGCTTTTGCTCACATCGTGCCAATGTTTATTCGAAAGGAATTTGATTCAT
CCCGACGGGCCTCAAGAAGTGGTTTCAAGGATATGTTGAGGTCTTATGTT
TCAATGTATGGTCTGGCTGACCCAGAAAATATCAAGAACTTACGATACTC
ACGTTCTAGTGCGTTAGTCTTTTCTTTGCTGGTAGACAATAGGACAATGG
ATGTGAACTTGCTCAAACAATTCATTTATGCGGCTTTGGCATCAAGAAGA
AGAAAATTATTGAGCATTCTAGTTCAACTAATACCTTCTGAGACACCAAC
AAACCCTTCTGTGAATGAAATACTAAACGCTCTACGGACATTTAACGTTT
CGACCCTCCGCGAATAG
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