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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005702872.1 |
| Preferred name | LSS |
| PFAMs | SQHop_cyclase_C,SQHop_cyclase_N |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00874,RC01582,RC02604 |
| KEGG ko | ko:K01852,ko:K01853,ko:K15811 |
| KEGG Reaction | R03199,R03200,R09689 |
| KEGG Pathway | ko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130 |
| KEGG Module | M00101 |
| GOs | GO:0000250,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006722,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008299,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0010685,GO:0010686,GO:0012505,GO:0016020,GO:0016104,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016853,GO:0016866,GO:0019216,GO:0019218,GO:0019222,GO:0019748,GO:0031559,GO:0031647,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090181,GO:0097384,GO:0098827,GO:0106118,GO:1900579,GO:1900581,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930 |
| Evalue | 3.89e-306 |
| EggNOG OGs | COG1657@1|root,KOG0497@2759|Eukaryota |
| EC | 5.4.99.32,5.4.99.7,5.4.99.8 |
| Description | oxidosqualene cyclase activity |
| COG category | I |
| BiGG Reaction | iMM904.YHR072W,iND750.YHR072W |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11722.t1 ID=Gvermi11722.t1|Name=Gvermi11722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=745bp METTEGHQKMWKLRFERGRQWWEPNGICEEPLLSELQEARTTFAANRHNT NHSSDRVLRILGAHGLIEGNPTSGRIEPVPDHLREDPLAVAIHKGIAYFA TLQCGDGHWAGDYAGPMFLLPGMVIACYVSKTILHPSQKHEMIRYLRNHQ NNDGGFGLHIEHKSIMFGTGLNYVALRLLGVDPDDPDAVRARQWILDHGG AGGIPGWGKFWLSVLGVYEWDGVDPLTPEFWLLPYALPMHPARFWCHCRV VYLPMSYLYGRKAVGEQTDIVTELREELYGEPYGEINWASFRGKCCEEDV YVKRPYMQRILWGVLTVFEKAWFPFKKVLRQKALQETLFLVKGEDRFSDH IDIGPVNKVINFLCVWFDNPNSEEVAKHRDRLKDYLWLAEDGMKMQGYNG SQLWDTAFTSQAFMAAGKIILRPFVRTLSLAHNYIRITQVRENVPDRERY YRHPSKGAWPFSTRDHGWPIADCTGEGLAAALLLQSEEGEWIPKTEHISL TQLAEAAEMILSYQNKDGGWATYELTRGPRWLEFLNPSEVFGDIMIDYSY VECSASAMKGLGEFRKAYPNHPLRARIDCSIEKGVMFIESMQRGDGSWYG SWGVCFLYAFWFAMDAYSSVGLTPDSSTSMRRACEFVLSKQKEDGSWGES YLSSESLVYVHSKQGLVVSTGWALVGLSMAKWPNKKPLRKAAEFLIRSQE DDGDWPQQSICGVFNKNCMISYAQYRNIFPIWALSQYRKYYSAL* back to topspliced messenger RNA >Gvermi11722.t1 ID=Gvermi11722.t1|Name=Gvermi11722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2235bp|location=Sequence derived from alignment at ScGOVlb_3404:1789012..1791246- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAACCACTGAAGGCCACCAAAAGATGTGGAAGCTCCGATTCGAAAG AGGAAGGCAGTGGTGGGAGCCCAATGGAATATGCGAAGAACCGCTTCTTT CAGAACTGCAAGAAGCACGGACAACTTTCGCTGCCAATCGTCACAACACG AACCATTCATCAGATCGCGTACTTCGCATTCTTGGTGCCCATGGATTGAT AGAAGGAAATCCAACTTCAGGCAGAATCGAGCCCGTTCCTGATCATCTCC GCGAAGATCCATTGGCCGTGGCCATTCATAAAGGGATAGCATATTTTGCA ACGCTTCAGTGTGGAGATGGGCATTGGGCAGGTGACTATGCAGGGCCGAT GTTTCTCTTACCAGGGATGGTTATTGCTTGTTATGTTTCTAAGACAATTC TTCATCCCTCTCAAAAACACGAAATGATCCGTTATCTTCGTAATCACCAG AACAATGACGGTGGATTTGGATTGCACATCGAACATAAGTCAATAATGTT TGGAACTGGTTTGAACTATGTTGCACTGAGATTGTTGGGAGTGGATCCTG ACGATCCGGATGCCGTGCGAGCAAGGCAGTGGATCCTAGACCATGGGGGA GCGGGGGGCATTCCTGGCTGGGGCAAGTTCTGGCTTTCGGTTTTAGGTGT TTACGAATGGGATGGTGTGGACCCATTGACACCGGAATTTTGGCTTTTAC CATATGCGCTTCCGATGCACCCTGCTCGGTTTTGGTGCCATTGCCGGGTT GTTTACCTCCCGATGAGCTACTTATATGGGAGAAAGGCTGTCGGTGAGCA GACTGACATTGTCACAGAACTTCGAGAAGAACTGTACGGAGAACCATACG GCGAAATAAACTGGGCAAGCTTCAGAGGCAAATGCTGCGAAGAAGACGTC TATGTGAAGAGGCCTTATATGCAACGCATCTTGTGGGGCGTGCTAACAGT TTTTGAGAAAGCATGGTTTCCGTTTAAGAAAGTCCTGAGACAAAAAGCAC TTCAAGAAACCCTTTTTCTTGTCAAAGGAGAAGATCGGTTTTCGGATCAC ATTGATATTGGTCCGGTAAATAAGGTGATCAATTTCTTGTGTGTATGGTT TGATAACCCAAACAGCGAGGAAGTAGCGAAGCATCGTGACAGGCTGAAGG ACTACCTATGGCTTGCTGAAGATGGTATGAAAATGCAAGGATACAATGGT TCTCAACTTTGGGACACGGCATTTACGAGTCAAGCGTTTATGGCGGCAGG AAAAATTATCCTACGGCCCTTTGTAAGAACATTGTCACTGGCCCATAATT ACATCAGGATCACACAAGTTCGAGAGAACGTTCCTGACCGTGAAAGATAC TATCGGCATCCAAGCAAAGGCGCATGGCCTTTCAGTACACGAGATCATGG GTGGCCCATTGCCGACTGCACCGGGGAAGGTCTTGCGGCGGCGTTGTTGC TGCAAAGTGAAGAAGGTGAGTGGATTCCAAAAACAGAACATATTTCTCTT ACTCAGCTTGCCGAAGCGGCTGAAATGATTCTTAGTTATCAGAACAAGGA CGGAGGTTGGGCTACTTACGAGCTTACTCGTGGCCCAAGATGGCTGGAAT TTCTGAATCCGTCCGAAGTCTTCGGAGACATAATGATTGACTACTCATAT GTGGAATGCTCTGCTTCGGCCATGAAAGGTTTAGGAGAGTTTCGAAAAGC CTATCCTAACCATCCATTGAGGGCTAGAATAGACTGCTCAATTGAAAAAG GCGTCATGTTTATTGAGTCTATGCAGAGAGGGGATGGTTCGTGGTATGGA AGTTGGGGTGTTTGTTTTCTCTACGCGTTTTGGTTTGCCATGGATGCATA CTCTTCTGTTGGACTCACGCCTGATTCGAGCACTTCAATGCGGCGGGCAT GTGAATTTGTTTTGAGCAAACAGAAAGAAGACGGTAGTTGGGGAGAAAGT TATCTAAGCTCTGAAAGCCTAGTATACGTACACTCAAAGCAGGGGCTCGT AGTCAGCACGGGTTGGGCACTCGTAGGTTTAAGTATGGCGAAATGGCCTA ATAAGAAACCGTTGCGGAAGGCTGCCGAATTTCTCATTCGGTCTCAGGAA GATGACGGAGACTGGCCACAGCAAAGCATTTGCGGTGTATTCAATAAGAA TTGCATGATCTCTTATGCTCAATACCGCAACATCTTTCCGATCTGGGCCC TTTCTCAATACCGCAAGTATTACTCAGCTTTGTAG back to topprotein sequence of Gvermi11722.t1 >Gvermi11722.t1 ID=Gvermi11722.t1|Name=Gvermi11722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=745bp
METTEGHQKMWKLRFERGRQWWEPNGICEEPLLSELQEARTTFAANRHNT NHSSDRVLRILGAHGLIEGNPTSGRIEPVPDHLREDPLAVAIHKGIAYFA TLQCGDGHWAGDYAGPMFLLPGMVIACYVSKTILHPSQKHEMIRYLRNHQ NNDGGFGLHIEHKSIMFGTGLNYVALRLLGVDPDDPDAVRARQWILDHGG AGGIPGWGKFWLSVLGVYEWDGVDPLTPEFWLLPYALPMHPARFWCHCRV VYLPMSYLYGRKAVGEQTDIVTELREELYGEPYGEINWASFRGKCCEEDV YVKRPYMQRILWGVLTVFEKAWFPFKKVLRQKALQETLFLVKGEDRFSDH IDIGPVNKVINFLCVWFDNPNSEEVAKHRDRLKDYLWLAEDGMKMQGYNG SQLWDTAFTSQAFMAAGKIILRPFVRTLSLAHNYIRITQVRENVPDRERY YRHPSKGAWPFSTRDHGWPIADCTGEGLAAALLLQSEEGEWIPKTEHISL TQLAEAAEMILSYQNKDGGWATYELTRGPRWLEFLNPSEVFGDIMIDYSY VECSASAMKGLGEFRKAYPNHPLRARIDCSIEKGVMFIESMQRGDGSWYG SWGVCFLYAFWFAMDAYSSVGLTPDSSTSMRRACEFVLSKQKEDGSWGES YLSSESLVYVHSKQGLVVSTGWALVGLSMAKWPNKKPLRKAAEFLIRSQE DDGDWPQQSICGVFNKNCMISYAQYRNIFPIWALSQYRKYYSAL* back to topmRNA from alignment at ScGOVlb_3404:1789012..1791246- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11722.t1 ID=Gvermi11722.t1|Name=Gvermi11722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2235bp|location=Sequence derived from alignment at ScGOVlb_3404:1789012..1791246- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGAAACCACTGAAGGCCACCAAAAGATGTGGAAGCTCCGATTCGAAAG
AGGAAGGCAGTGGTGGGAGCCCAATGGAATATGCGAAGAACCGCTTCTTT
CAGAACTGCAAGAAGCACGGACAACTTTCGCTGCCAATCGTCACAACACG
AACCATTCATCAGATCGCGTACTTCGCATTCTTGGTGCCCATGGATTGAT
AGAAGGAAATCCAACTTCAGGCAGAATCGAGCCCGTTCCTGATCATCTCC
GCGAAGATCCATTGGCCGTGGCCATTCATAAAGGGATAGCATATTTTGCA
ACGCTTCAGTGTGGAGATGGGCATTGGGCAGGTGACTATGCAGGGCCGAT
GTTTCTCTTACCAGGGATGGTTATTGCTTGTTATGTTTCTAAGACAATTC
TTCATCCCTCTCAAAAACACGAAATGATCCGTTATCTTCGTAATCACCAG
AACAATGACGGTGGATTTGGATTGCACATCGAACATAAGTCAATAATGTT
TGGAACTGGTTTGAACTATGTTGCACTGAGATTGTTGGGAGTGGATCCTG
ACGATCCGGATGCCGTGCGAGCAAGGCAGTGGATCCTAGACCATGGGGGA
GCGGGGGGCATTCCTGGCTGGGGCAAGTTCTGGCTTTCGGTTTTAGGTGT
TTACGAATGGGATGGTGTGGACCCATTGACACCGGAATTTTGGCTTTTAC
CATATGCGCTTCCGATGCACCCTGCTCGGTTTTGGTGCCATTGCCGGGTT
GTTTACCTCCCGATGAGCTACTTATATGGGAGAAAGGCTGTCGGTGAGCA
GACTGACATTGTCACAGAACTTCGAGAAGAACTGTACGGAGAACCATACG
GCGAAATAAACTGGGCAAGCTTCAGAGGCAAATGCTGCGAAGAAGACGTC
TATGTGAAGAGGCCTTATATGCAACGCATCTTGTGGGGCGTGCTAACAGT
TTTTGAGAAAGCATGGTTTCCGTTTAAGAAAGTCCTGAGACAAAAAGCAC
TTCAAGAAACCCTTTTTCTTGTCAAAGGAGAAGATCGGTTTTCGGATCAC
ATTGATATTGGTCCGGTAAATAAGGTGATCAATTTCTTGTGTGTATGGTT
TGATAACCCAAACAGCGAGGAAGTAGCGAAGCATCGTGACAGGCTGAAGG
ACTACCTATGGCTTGCTGAAGATGGTATGAAAATGCAAGGATACAATGGT
TCTCAACTTTGGGACACGGCATTTACGAGTCAAGCGTTTATGGCGGCAGG
AAAAATTATCCTACGGCCCTTTGTAAGAACATTGTCACTGGCCCATAATT
ACATCAGGATCACACAAGTTCGAGAGAACGTTCCTGACCGTGAAAGATAC
TATCGGCATCCAAGCAAAGGCGCATGGCCTTTCAGTACACGAGATCATGG
GTGGCCCATTGCCGACTGCACCGGGGAAGGTCTTGCGGCGGCGTTGTTGC
TGCAAAGTGAAGAAGGTGAGTGGATTCCAAAAACAGAACATATTTCTCTT
ACTCAGCTTGCCGAAGCGGCTGAAATGATTCTTAGTTATCAGAACAAGGA
CGGAGGTTGGGCTACTTACGAGCTTACTCGTGGCCCAAGATGGCTGGAAT
TTCTGAATCCGTCCGAAGTCTTCGGAGACATAATGATTGACTACTCATAT
GTGGAATGCTCTGCTTCGGCCATGAAAGGTTTAGGAGAGTTTCGAAAAGC
CTATCCTAACCATCCATTGAGGGCTAGAATAGACTGCTCAATTGAAAAAG
GCGTCATGTTTATTGAGTCTATGCAGAGAGGGGATGGTTCGTGGTATGGA
AGTTGGGGTGTTTGTTTTCTCTACGCGTTTTGGTTTGCCATGGATGCATA
CTCTTCTGTTGGACTCACGCCTGATTCGAGCACTTCAATGCGGCGGGCAT
GTGAATTTGTTTTGAGCAAACAGAAAGAAGACGGTAGTTGGGGAGAAAGT
TATCTAAGCTCTGAAAGCCTAGTATACGTACACTCAAAGCAGGGGCTCGT
AGTCAGCACGGGTTGGGCACTCGTAGGTTTAAGTATGGCGAAATGGCCTA
ATAAGAAACCGTTGCGGAAGGCTGCCGAATTTCTCATTCGGTCTCAGGAA
GATGACGGAGACTGGCCACAGCAAAGCATTTGCGGTGTATTCAATAAGAA
TTGCATGATCTCTTATGCTCAATACCGCAACATCTTTCCGATCTGGGCCC
TTTCTCAATACCGCAAGTATTACTCAGCTTTGTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:1789012..1791246- >Gvermi11722.t1 ID=Gvermi11722.t1|Name=Gvermi11722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2235bp|location=Sequence derived from alignment at ScGOVlb_3404:1789012..1791246- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGAAACCACTGAAGGCCACCAAAAGATGTGGAAGCTCCGATTCGAAAG AGGAAGGCAGTGGTGGGAGCCCAATGGAATATGCGAAGAACCGCTTCTTT CAGAACTGCAAGAAGCACGGACAACTTTCGCTGCCAATCGTCACAACACG AACCATTCATCAGATCGCGTACTTCGCATTCTTGGTGCCCATGGATTGAT AGAAGGAAATCCAACTTCAGGCAGAATCGAGCCCGTTCCTGATCATCTCC GCGAAGATCCATTGGCCGTGGCCATTCATAAAGGGATAGCATATTTTGCA ACGCTTCAGTGTGGAGATGGGCATTGGGCAGGTGACTATGCAGGGCCGAT GTTTCTCTTACCAGGGATGGTTATTGCTTGTTATGTTTCTAAGACAATTC TTCATCCCTCTCAAAAACACGAAATGATCCGTTATCTTCGTAATCACCAG AACAATGACGGTGGATTTGGATTGCACATCGAACATAAGTCAATAATGTT TGGAACTGGTTTGAACTATGTTGCACTGAGATTGTTGGGAGTGGATCCTG ACGATCCGGATGCCGTGCGAGCAAGGCAGTGGATCCTAGACCATGGGGGA GCGGGGGGCATTCCTGGCTGGGGCAAGTTCTGGCTTTCGGTTTTAGGTGT TTACGAATGGGATGGTGTGGACCCATTGACACCGGAATTTTGGCTTTTAC CATATGCGCTTCCGATGCACCCTGCTCGGTTTTGGTGCCATTGCCGGGTT GTTTACCTCCCGATGAGCTACTTATATGGGAGAAAGGCTGTCGGTGAGCA GACTGACATTGTCACAGAACTTCGAGAAGAACTGTACGGAGAACCATACG GCGAAATAAACTGGGCAAGCTTCAGAGGCAAATGCTGCGAAGAAGACGTC TATGTGAAGAGGCCTTATATGCAACGCATCTTGTGGGGCGTGCTAACAGT TTTTGAGAAAGCATGGTTTCCGTTTAAGAAAGTCCTGAGACAAAAAGCAC TTCAAGAAACCCTTTTTCTTGTCAAAGGAGAAGATCGGTTTTCGGATCAC ATTGATATTGGTCCGGTAAATAAGGTGATCAATTTCTTGTGTGTATGGTT TGATAACCCAAACAGCGAGGAAGTAGCGAAGCATCGTGACAGGCTGAAGG ACTACCTATGGCTTGCTGAAGATGGTATGAAAATGCAAGGATACAATGGT TCTCAACTTTGGGACACGGCATTTACGAGTCAAGCGTTTATGGCGGCAGG AAAAATTATCCTACGGCCCTTTGTAAGAACATTGTCACTGGCCCATAATT ACATCAGGATCACACAAGTTCGAGAGAACGTTCCTGACCGTGAAAGATAC TATCGGCATCCAAGCAAAGGCGCATGGCCTTTCAGTACACGAGATCATGG GTGGCCCATTGCCGACTGCACCGGGGAAGGTCTTGCGGCGGCGTTGTTGC TGCAAAGTGAAGAAGGTGAGTGGATTCCAAAAACAGAACATATTTCTCTT ACTCAGCTTGCCGAAGCGGCTGAAATGATTCTTAGTTATCAGAACAAGGA CGGAGGTTGGGCTACTTACGAGCTTACTCGTGGCCCAAGATGGCTGGAAT TTCTGAATCCGTCCGAAGTCTTCGGAGACATAATGATTGACTACTCATAT GTGGAATGCTCTGCTTCGGCCATGAAAGGTTTAGGAGAGTTTCGAAAAGC CTATCCTAACCATCCATTGAGGGCTAGAATAGACTGCTCAATTGAAAAAG GCGTCATGTTTATTGAGTCTATGCAGAGAGGGGATGGTTCGTGGTATGGA AGTTGGGGTGTTTGTTTTCTCTACGCGTTTTGGTTTGCCATGGATGCATA CTCTTCTGTTGGACTCACGCCTGATTCGAGCACTTCAATGCGGCGGGCAT GTGAATTTGTTTTGAGCAAACAGAAAGAAGACGGTAGTTGGGGAGAAAGT TATCTAAGCTCTGAAAGCCTAGTATACGTACACTCAAAGCAGGGGCTCGT AGTCAGCACGGGTTGGGCACTCGTAGGTTTAAGTATGGCGAAATGGCCTA ATAAGAAACCGTTGCGGAAGGCTGCCGAATTTCTCATTCGGTCTCAGGAA GATGACGGAGACTGGCCACAGCAAAGCATTTGCGGTGTATTCAATAAGAA TTGCATGATCTCTTATGCTCAATACCGCAACATCTTTCCGATCTGGGCCC TTTCTCAATACCGCAAGTATTACTCAGCTTTGTAG back to top
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