Gvermi11721.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11721.t1
Unique NameGvermi11721.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1787444..1788934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11721Gvermi11721Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1787444..1788934 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11721.t1.start1Gvermi11721.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1787444..1787446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11721.t1.CDS1Gvermi11721.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1787444..1788934 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11721.t1.exon1Gvermi11721.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1787444..1788934 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11721.t1.stop1Gvermi11721.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1788932..1788934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11721.t1Gvermi11721.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1787444..1788934 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11721.t1 ID=Gvermi11721.t1|Name=Gvermi11721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=497bp
MNIFFLTTLTIISVVWAHRPATVPSTIVNSFLPRGFNGTVQSMVVDVNKN
IFAACFDPADSEHSSAFLLKLDPELHMVWSREYDALPLMSPTIAFSDTMG
LYIVIPTLDSTASDIQVWIYEIDVDDGKTIQAVQVDSVNSIAGFGLKAFV
SVSEYERPTILLSYVELRKPEEDTVTKIFKFQKMDSSILHEQWRTQIHNA
SRITVSHDIAEQVPGAGIYVAEIIHERTINMSNTAMITMIDKNGSIVFTE
SFPTMSENAEILCFISDDIGLMYLSESPSYLHHLSMISLNGSFRITKVWS
DTSAQITAMHILRNGSLLYALGDSESVRDFNVSRRSEKVPLFVVYDRNGS
TILTEKHNQSMKGVRLHLKTFAMKNEAVSSAIVLGGDFQLARTDGSFGRA
QISLASYIFPIVASRPEVDPVFSPDPVTPFRNHTDESGKTQNWSRAVIIG
ITSVISGVIVVVVIFSCMLQRGFSKFSREKHNESSLSISRKLSTFS*
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spliced messenger RNA

>Gvermi11721.t1 ID=Gvermi11721.t1|Name=Gvermi11721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at ScGOVlb_3404:1787444..1788934+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCTTCTTTTTGACTACACTGACCATCATTTCTGTTGTTTGGGC
TCATAGACCTGCTACGGTTCCAAGCACCATTGTCAACTCTTTTCTTCCGC
GTGGTTTCAATGGCACAGTCCAAAGCATGGTTGTCGATGTGAACAAAAAT
ATTTTTGCCGCTTGCTTCGATCCTGCCGACAGCGAGCATAGCTCAGCTTT
CCTTCTAAAACTGGATCCAGAACTTCATATGGTATGGAGCAGAGAGTATG
ATGCTCTTCCTCTCATGTCCCCAACAATCGCTTTCTCTGACACAATGGGT
CTGTATATTGTCATTCCTACATTGGATTCCACGGCCAGTGACATTCAGGT
ATGGATTTACGAGATTGATGTCGATGATGGAAAAACAATTCAGGCTGTCC
AAGTAGACAGTGTTAACTCTATTGCAGGATTTGGATTGAAGGCATTTGTG
TCGGTCAGTGAATATGAAAGACCGACTATCCTCCTTTCGTATGTCGAGCT
CCGCAAACCTGAAGAAGACACTGTGACCAAGATTTTCAAATTCCAAAAGA
TGGACTCCAGTATTCTCCATGAACAGTGGAGAACTCAGATACACAACGCA
TCACGGATTACTGTATCTCATGATATTGCTGAACAGGTTCCAGGTGCAGG
AATATATGTTGCCGAAATTATTCACGAACGAACGATTAACATGTCCAATA
CTGCAATGATAACGATGATTGACAAAAACGGTTCCATAGTATTCACCGAA
TCTTTCCCTACCATGAGTGAGAATGCTGAGATTTTATGTTTTATTAGCGA
TGATATTGGATTGATGTACTTATCGGAATCCCCTTCATATCTCCATCACT
TATCAATGATCTCTTTGAATGGAAGCTTTAGGATAACAAAAGTATGGTCA
GATACATCAGCACAAATCACCGCAATGCACATCTTACGAAACGGAAGCCT
CTTATATGCACTTGGCGATTCGGAAAGTGTTCGAGACTTCAATGTTTCAC
GGCGCTCTGAAAAAGTACCTCTCTTTGTTGTGTACGACCGCAACGGATCC
ACTATTCTCACGGAGAAACACAATCAGAGCATGAAAGGCGTCCGTCTGCA
TTTAAAAACGTTTGCAATGAAAAACGAGGCCGTAAGTTCGGCAATCGTTT
TGGGAGGGGATTTCCAGCTTGCCCGAACTGACGGAAGTTTCGGACGCGCT
CAAATATCACTTGCTTCTTACATTTTTCCAATCGTAGCTTCTCGACCTGA
GGTCGACCCAGTCTTCTCTCCAGATCCCGTTACACCATTTCGGAATCATA
CAGATGAATCGGGCAAGACCCAGAACTGGTCTCGAGCTGTCATTATCGGG
ATAACCAGCGTAATTTCCGGAGTAATTGTCGTGGTGGTGATCTTTTCATG
CATGCTCCAAAGAGGGTTCTCAAAATTTTCTCGAGAGAAACACAATGAGA
GTTCATTGAGCATTTCCCGGAAACTCTCGACGTTCTCGTGA
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protein sequence of Gvermi11721.t1

>Gvermi11721.t1 ID=Gvermi11721.t1|Name=Gvermi11721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=497bp
MNIFFLTTLTIISVVWAHRPATVPSTIVNSFLPRGFNGTVQSMVVDVNKN
IFAACFDPADSEHSSAFLLKLDPELHMVWSREYDALPLMSPTIAFSDTMG
LYIVIPTLDSTASDIQVWIYEIDVDDGKTIQAVQVDSVNSIAGFGLKAFV
SVSEYERPTILLSYVELRKPEEDTVTKIFKFQKMDSSILHEQWRTQIHNA
SRITVSHDIAEQVPGAGIYVAEIIHERTINMSNTAMITMIDKNGSIVFTE
SFPTMSENAEILCFISDDIGLMYLSESPSYLHHLSMISLNGSFRITKVWS
DTSAQITAMHILRNGSLLYALGDSESVRDFNVSRRSEKVPLFVVYDRNGS
TILTEKHNQSMKGVRLHLKTFAMKNEAVSSAIVLGGDFQLARTDGSFGRA
QISLASYIFPIVASRPEVDPVFSPDPVTPFRNHTDESGKTQNWSRAVIIG
ITSVISGVIVVVVIFSCMLQRGFSKFSREKHNESSLSISRKLSTFS*
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mRNA from alignment at ScGOVlb_3404:1787444..1788934+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11721.t1 ID=Gvermi11721.t1|Name=Gvermi11721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at ScGOVlb_3404:1787444..1788934+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACATCTTCTTTTTGACTACACTGACCATCATTTCTGTTGTTTGGGC
TCATAGACCTGCTACGGTTCCAAGCACCATTGTCAACTCTTTTCTTCCGC
GTGGTTTCAATGGCACAGTCCAAAGCATGGTTGTCGATGTGAACAAAAAT
ATTTTTGCCGCTTGCTTCGATCCTGCCGACAGCGAGCATAGCTCAGCTTT
CCTTCTAAAACTGGATCCAGAACTTCATATGGTATGGAGCAGAGAGTATG
ATGCTCTTCCTCTCATGTCCCCAACAATCGCTTTCTCTGACACAATGGGT
CTGTATATTGTCATTCCTACATTGGATTCCACGGCCAGTGACATTCAGGT
ATGGATTTACGAGATTGATGTCGATGATGGAAAAACAATTCAGGCTGTCC
AAGTAGACAGTGTTAACTCTATTGCAGGATTTGGATTGAAGGCATTTGTG
TCGGTCAGTGAATATGAAAGACCGACTATCCTCCTTTCGTATGTCGAGCT
CCGCAAACCTGAAGAAGACACTGTGACCAAGATTTTCAAATTCCAAAAGA
TGGACTCCAGTATTCTCCATGAACAGTGGAGAACTCAGATACACAACGCA
TCACGGATTACTGTATCTCATGATATTGCTGAACAGGTTCCAGGTGCAGG
AATATATGTTGCCGAAATTATTCACGAACGAACGATTAACATGTCCAATA
CTGCAATGATAACGATGATTGACAAAAACGGTTCCATAGTATTCACCGAA
TCTTTCCCTACCATGAGTGAGAATGCTGAGATTTTATGTTTTATTAGCGA
TGATATTGGATTGATGTACTTATCGGAATCCCCTTCATATCTCCATCACT
TATCAATGATCTCTTTGAATGGAAGCTTTAGGATAACAAAAGTATGGTCA
GATACATCAGCACAAATCACCGCAATGCACATCTTACGAAACGGAAGCCT
CTTATATGCACTTGGCGATTCGGAAAGTGTTCGAGACTTCAATGTTTCAC
GGCGCTCTGAAAAAGTACCTCTCTTTGTTGTGTACGACCGCAACGGATCC
ACTATTCTCACGGAGAAACACAATCAGAGCATGAAAGGCGTCCGTCTGCA
TTTAAAAACGTTTGCAATGAAAAACGAGGCCGTAAGTTCGGCAATCGTTT
TGGGAGGGGATTTCCAGCTTGCCCGAACTGACGGAAGTTTCGGACGCGCT
CAAATATCACTTGCTTCTTACATTTTTCCAATCGTAGCTTCTCGACCTGA
GGTCGACCCAGTCTTCTCTCCAGATCCCGTTACACCATTTCGGAATCATA
CAGATGAATCGGGCAAGACCCAGAACTGGTCTCGAGCTGTCATTATCGGG
ATAACCAGCGTAATTTCCGGAGTAATTGTCGTGGTGGTGATCTTTTCATG
CATGCTCCAAAGAGGGTTCTCAAAATTTTCTCGAGAGAAACACAATGAGA
GTTCATTGAGCATTTCCCGGAAACTCTCGACGTTCTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1787444..1788934+

>Gvermi11721.t1 ID=Gvermi11721.t1|Name=Gvermi11721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1491bp|location=Sequence derived from alignment at ScGOVlb_3404:1787444..1788934+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACATCTTCTTTTTGACTACACTGACCATCATTTCTGTTGTTTGGGC
TCATAGACCTGCTACGGTTCCAAGCACCATTGTCAACTCTTTTCTTCCGC
GTGGTTTCAATGGCACAGTCCAAAGCATGGTTGTCGATGTGAACAAAAAT
ATTTTTGCCGCTTGCTTCGATCCTGCCGACAGCGAGCATAGCTCAGCTTT
CCTTCTAAAACTGGATCCAGAACTTCATATGGTATGGAGCAGAGAGTATG
ATGCTCTTCCTCTCATGTCCCCAACAATCGCTTTCTCTGACACAATGGGT
CTGTATATTGTCATTCCTACATTGGATTCCACGGCCAGTGACATTCAGGT
ATGGATTTACGAGATTGATGTCGATGATGGAAAAACAATTCAGGCTGTCC
AAGTAGACAGTGTTAACTCTATTGCAGGATTTGGATTGAAGGCATTTGTG
TCGGTCAGTGAATATGAAAGACCGACTATCCTCCTTTCGTATGTCGAGCT
CCGCAAACCTGAAGAAGACACTGTGACCAAGATTTTCAAATTCCAAAAGA
TGGACTCCAGTATTCTCCATGAACAGTGGAGAACTCAGATACACAACGCA
TCACGGATTACTGTATCTCATGATATTGCTGAACAGGTTCCAGGTGCAGG
AATATATGTTGCCGAAATTATTCACGAACGAACGATTAACATGTCCAATA
CTGCAATGATAACGATGATTGACAAAAACGGTTCCATAGTATTCACCGAA
TCTTTCCCTACCATGAGTGAGAATGCTGAGATTTTATGTTTTATTAGCGA
TGATATTGGATTGATGTACTTATCGGAATCCCCTTCATATCTCCATCACT
TATCAATGATCTCTTTGAATGGAAGCTTTAGGATAACAAAAGTATGGTCA
GATACATCAGCACAAATCACCGCAATGCACATCTTACGAAACGGAAGCCT
CTTATATGCACTTGGCGATTCGGAAAGTGTTCGAGACTTCAATGTTTCAC
GGCGCTCTGAAAAAGTACCTCTCTTTGTTGTGTACGACCGCAACGGATCC
ACTATTCTCACGGAGAAACACAATCAGAGCATGAAAGGCGTCCGTCTGCA
TTTAAAAACGTTTGCAATGAAAAACGAGGCCGTAAGTTCGGCAATCGTTT
TGGGAGGGGATTTCCAGCTTGCCCGAACTGACGGAAGTTTCGGACGCGCT
CAAATATCACTTGCTTCTTACATTTTTCCAATCGTAGCTTCTCGACCTGA
GGTCGACCCAGTCTTCTCTCCAGATCCCGTTACACCATTTCGGAATCATA
CAGATGAATCGGGCAAGACCCAGAACTGGTCTCGAGCTGTCATTATCGGG
ATAACCAGCGTAATTTCCGGAGTAATTGTCGTGGTGGTGATCTTTTCATG
CATGCTCCAAAGAGGGTTCTCAAAATTTTCTCGAGAGAAACACAATGAGA
GTTCATTGAGCATTTCCCGGAAACTCTCGACGTTCTCGTGA
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