Gvermi11720.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11720.t1
Unique Name	Gvermi11720.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	684

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:1784228..1786279 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S54_107V6.3
PFAMs	ABC_membrane_2,ABC_tran
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15628
KEGG TC	3.A.1.203.2,3.A.1.203.6
KEGG Pathway	ko02010,ko04146,map02010,map04146
Evalue	4.73e-193
EggNOG OGs	COG4178@1\|root,KOG0060@2759\|Eukaryota,37Q69@33090\|Viridiplantae,3GNRP@35493\|Streptophyta
Description	ABC transporter transmembrane region 2
COG category	Q
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11720	Gvermi11720	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 1784228..1786279 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11720.t1.stop1	Gvermi11720.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 1784228..1784230 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11720.t1.CDS1	Gvermi11720.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 1784228..1786279 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11720.t1.exon1	Gvermi11720.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 1784228..1786279 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11720.t1.start1	Gvermi11720.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 1786277..1786279 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11720.t1	Gvermi11720.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 1784228..1786279 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:1784228..1786279-
coding sequence from alignment at ScGOVlb_3404:1784228..1786279-

mRNA sequence

>Gvermi11720.t1 ID=Gvermi11720.t1|Name=Gvermi11720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp
MSLSYITLTPRSRIVLALLFAGGGGAVAVGHLRALQRSLRSEQQALTSHA
LRDSKRSSSRGRAHLDARSVRRLLAILGVCVPGPMSRSAALLALQGVLLT
ARTLLSDRMCALEGECAENITAANWGGFRRVLGKFALTAIPASIVTSAMK
ASQVTVSLALRTALARHLHRLYLANRAYYSASVLSGLSHPDQRITEDVEK
FSETFAEIYSYTFKPLLDIIIFSRSLASIMGYRGQFALYVYFIVVGAFLR
RISPPLGRMTSEFATLSADLRAAHSRIATNAEEIAFNDPPAGRAEMLSLN
TRLARMIRHSKLSVIQRFIQQCFDGYLVKYTASIIGLIVFAVPLYYTPVE
QRGATNVIAGKYINAMRLMMQTSAAMGELVLVYKRINTLAGHTDRVSEMM
EKIRELGKPNGHLEAFRILQDRVFNPDNDVIRRSSDSGKRSISTASKAFP
PKRQFGKSIILENVSMWSPDGAPLVQKLSFEVLQGSSVIILGPNGSGKSS
VLRMLAGLWPLQAGTVTLPARTDVFYLSQRPYMYAGTLREQLMYPRLPGV
VIGEQIIFDEKAAVASLSSVELGHLVARCGGFDGEMSWDDVLSGGERNRL
AVARLLYHKPSYAVLDECTAAVSADGEVALYQAMTNAGITLLSVAHRKAV
MKFHELAVVLDGAGEWKVKKVQDAVDNSFSNGA*

spliced messenger RNA

>Gvermi11720.t1 ID=Gvermi11720.t1|Name=Gvermi11720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2052bp|location=Sequence derived from alignment at ScGOVlb_3404:1784228..1786279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTTTCGTATATTACTCTCACGCCGCGTTCGCGTATAGTACTTGC
GCTGCTCTTTGCTGGCGGTGGCGGAGCCGTGGCAGTCGGACATCTACGGG
CGCTTCAGCGATCACTGCGCTCCGAGCAACAAGCCCTAACGTCTCACGCT
CTCCGGGATTCGAAGAGGAGCTCTTCGCGCGGACGTGCCCATCTGGATGC
TCGCTCTGTACGGCGCCTGCTCGCTATTTTGGGGGTATGTGTTCCGGGTC
CCATGTCTCGCTCTGCAGCGTTGCTTGCACTACAAGGTGTACTACTCACA
GCTCGAACGTTGCTAAGCGATCGCATGTGCGCCTTGGAGGGCGAGTGCGC
TGAGAATATTACTGCGGCGAACTGGGGAGGGTTTCGACGCGTTTTGGGCA
AGTTTGCACTGACTGCCATACCTGCATCAATTGTAACTTCTGCGATGAAG
GCTTCTCAAGTTACGGTCTCACTTGCGCTTCGAACGGCCCTTGCTCGTCA
TTTGCACCGTCTTTACTTAGCGAATCGTGCATATTATTCAGCCAGTGTGT
TGTCCGGTCTGTCGCATCCTGACCAGCGCATCACCGAAGATGTCGAGAAG
TTTTCCGAGACCTTTGCTGAAATCTATTCCTACACCTTCAAACCGTTGTT
GGACATCATCATCTTTTCACGTTCTCTAGCATCGATAATGGGCTACAGAG
GGCAATTTGCACTTTACGTATACTTCATTGTTGTTGGCGCCTTTCTGCGA
CGCATTTCTCCACCGCTCGGTCGCATGACGTCGGAATTTGCAACACTCAG
CGCTGATTTGCGAGCCGCACACTCACGCATTGCTACGAATGCGGAAGAGA
TTGCTTTCAACGATCCACCGGCTGGCCGGGCGGAGATGCTATCCCTCAAC
ACAAGACTTGCCCGCATGATTCGTCACTCGAAACTCTCTGTTATTCAGCG
ATTTATTCAGCAGTGCTTTGATGGCTATCTAGTTAAGTACACCGCATCCA
TTATAGGACTTATAGTTTTTGCCGTTCCCTTATATTACACCCCTGTCGAA
CAACGAGGAGCAACAAATGTGATAGCGGGAAAATACATCAACGCAATGCG
ACTTATGATGCAAACCTCAGCAGCCATGGGGGAGCTTGTGCTCGTGTACA
AGAGAATTAATACTCTGGCAGGCCATACTGACCGCGTCTCAGAGATGATG
GAGAAGATCAGAGAGTTGGGAAAGCCAAACGGCCATTTAGAAGCTTTCCG
TATACTACAAGATCGCGTTTTCAATCCTGACAATGACGTCATTCGACGAT
CTTCGGATTCAGGGAAGAGGAGCATTTCAACTGCCTCGAAGGCGTTTCCG
CCAAAGCGACAGTTCGGCAAAAGTATTATTCTGGAAAACGTTTCGATGTG
GTCTCCCGATGGGGCACCTCTCGTTCAGAAGCTCAGTTTCGAGGTACTGC
AAGGCTCTAGCGTTATCATATTGGGCCCTAACGGTAGTGGAAAGAGCAGT
GTGCTCCGCATGCTCGCTGGACTCTGGCCGCTTCAAGCTGGAACAGTCAC
TTTGCCCGCCCGAACAGATGTTTTCTATTTGTCTCAGCGACCGTATATGT
ATGCTGGTACGCTTCGAGAACAACTCATGTATCCAAGATTACCTGGAGTG
GTTATTGGCGAACAGATTATTTTTGACGAGAAGGCGGCCGTGGCCAGTTT
ATCCAGCGTAGAACTCGGTCATCTCGTTGCCCGATGTGGGGGTTTTGATG
GTGAAATGTCATGGGATGATGTTCTCAGCGGAGGGGAACGGAATCGATTG
GCTGTGGCCCGTCTCCTTTACCACAAGCCAAGTTACGCAGTCTTAGACGA
GTGCACCGCTGCTGTTTCAGCTGACGGTGAAGTTGCGTTGTACCAAGCCA
TGACAAATGCTGGCATTACTCTTCTCTCAGTCGCACACAGAAAAGCTGTC
ATGAAATTTCACGAGCTGGCCGTCGTTTTGGACGGTGCAGGCGAATGGAA
GGTTAAAAAGGTGCAAGACGCAGTGGACAATTCATTCTCGAACGGAGCGT
AG

protein sequence of Gvermi11720.t1

>Gvermi11720.t1 ID=Gvermi11720.t1|Name=Gvermi11720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=684bp
MSLSYITLTPRSRIVLALLFAGGGGAVAVGHLRALQRSLRSEQQALTSHA
LRDSKRSSSRGRAHLDARSVRRLLAILGVCVPGPMSRSAALLALQGVLLT
ARTLLSDRMCALEGECAENITAANWGGFRRVLGKFALTAIPASIVTSAMK
ASQVTVSLALRTALARHLHRLYLANRAYYSASVLSGLSHPDQRITEDVEK
FSETFAEIYSYTFKPLLDIIIFSRSLASIMGYRGQFALYVYFIVVGAFLR
RISPPLGRMTSEFATLSADLRAAHSRIATNAEEIAFNDPPAGRAEMLSLN
TRLARMIRHSKLSVIQRFIQQCFDGYLVKYTASIIGLIVFAVPLYYTPVE
QRGATNVIAGKYINAMRLMMQTSAAMGELVLVYKRINTLAGHTDRVSEMM
EKIRELGKPNGHLEAFRILQDRVFNPDNDVIRRSSDSGKRSISTASKAFP
PKRQFGKSIILENVSMWSPDGAPLVQKLSFEVLQGSSVIILGPNGSGKSS
VLRMLAGLWPLQAGTVTLPARTDVFYLSQRPYMYAGTLREQLMYPRLPGV
VIGEQIIFDEKAAVASLSSVELGHLVARCGGFDGEMSWDDVLSGGERNRL
AVARLLYHKPSYAVLDECTAAVSADGEVALYQAMTNAGITLLSVAHRKAV
MKFHELAVVLDGAGEWKVKKVQDAVDNSFSNGA*

mRNA from alignment at ScGOVlb_3404:1784228..1786279-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11720.t1 ID=Gvermi11720.t1|Name=Gvermi11720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2052bp|location=Sequence derived from alignment at ScGOVlb_3404:1784228..1786279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTTTCGTATATTACTCTCACGCCGCGTTCGCGTATAGTACTTGC
GCTGCTCTTTGCTGGCGGTGGCGGAGCCGTGGCAGTCGGACATCTACGGG
CGCTTCAGCGATCACTGCGCTCCGAGCAACAAGCCCTAACGTCTCACGCT
CTCCGGGATTCGAAGAGGAGCTCTTCGCGCGGACGTGCCCATCTGGATGC
TCGCTCTGTACGGCGCCTGCTCGCTATTTTGGGGGTATGTGTTCCGGGTC
CCATGTCTCGCTCTGCAGCGTTGCTTGCACTACAAGGTGTACTACTCACA
GCTCGAACGTTGCTAAGCGATCGCATGTGCGCCTTGGAGGGCGAGTGCGC
TGAGAATATTACTGCGGCGAACTGGGGAGGGTTTCGACGCGTTTTGGGCA
AGTTTGCACTGACTGCCATACCTGCATCAATTGTAACTTCTGCGATGAAG
GCTTCTCAAGTTACGGTCTCACTTGCGCTTCGAACGGCCCTTGCTCGTCA
TTTGCACCGTCTTTACTTAGCGAATCGTGCATATTATTCAGCCAGTGTGT
TGTCCGGTCTGTCGCATCCTGACCAGCGCATCACCGAAGATGTCGAGAAG
TTTTCCGAGACCTTTGCTGAAATCTATTCCTACACCTTCAAACCGTTGTT
GGACATCATCATCTTTTCACGTTCTCTAGCATCGATAATGGGCTACAGAG
GGCAATTTGCACTTTACGTATACTTCATTGTTGTTGGCGCCTTTCTGCGA
CGCATTTCTCCACCGCTCGGTCGCATGACGTCGGAATTTGCAACACTCAG
CGCTGATTTGCGAGCCGCACACTCACGCATTGCTACGAATGCGGAAGAGA
TTGCTTTCAACGATCCACCGGCTGGCCGGGCGGAGATGCTATCCCTCAAC
ACAAGACTTGCCCGCATGATTCGTCACTCGAAACTCTCTGTTATTCAGCG
ATTTATTCAGCAGTGCTTTGATGGCTATCTAGTTAAGTACACCGCATCCA
TTATAGGACTTATAGTTTTTGCCGTTCCCTTATATTACACCCCTGTCGAA
CAACGAGGAGCAACAAATGTGATAGCGGGAAAATACATCAACGCAATGCG
ACTTATGATGCAAACCTCAGCAGCCATGGGGGAGCTTGTGCTCGTGTACA
AGAGAATTAATACTCTGGCAGGCCATACTGACCGCGTCTCAGAGATGATG
GAGAAGATCAGAGAGTTGGGAAAGCCAAACGGCCATTTAGAAGCTTTCCG
TATACTACAAGATCGCGTTTTCAATCCTGACAATGACGTCATTCGACGAT
CTTCGGATTCAGGGAAGAGGAGCATTTCAACTGCCTCGAAGGCGTTTCCG
CCAAAGCGACAGTTCGGCAAAAGTATTATTCTGGAAAACGTTTCGATGTG
GTCTCCCGATGGGGCACCTCTCGTTCAGAAGCTCAGTTTCGAGGTACTGC
AAGGCTCTAGCGTTATCATATTGGGCCCTAACGGTAGTGGAAAGAGCAGT
GTGCTCCGCATGCTCGCTGGACTCTGGCCGCTTCAAGCTGGAACAGTCAC
TTTGCCCGCCCGAACAGATGTTTTCTATTTGTCTCAGCGACCGTATATGT
ATGCTGGTACGCTTCGAGAACAACTCATGTATCCAAGATTACCTGGAGTG
GTTATTGGCGAACAGATTATTTTTGACGAGAAGGCGGCCGTGGCCAGTTT
ATCCAGCGTAGAACTCGGTCATCTCGTTGCCCGATGTGGGGGTTTTGATG
GTGAAATGTCATGGGATGATGTTCTCAGCGGAGGGGAACGGAATCGATTG
GCTGTGGCCCGTCTCCTTTACCACAAGCCAAGTTACGCAGTCTTAGACGA
GTGCACCGCTGCTGTTTCAGCTGACGGTGAAGTTGCGTTGTACCAAGCCA
TGACAAATGCTGGCATTACTCTTCTCTCAGTCGCACACAGAAAAGCTGTC
ATGAAATTTCACGAGCTGGCCGTCGTTTTGGACGGTGCAGGCGAATGGAA
GGTTAAAAAGGTGCAAGACGCAGTGGACAATTCATTCTCGAACGGAGCGT
AG

Coding sequence (CDS) from alignment at ScGOVlb_3404:1784228..1786279-

>Gvermi11720.t1 ID=Gvermi11720.t1|Name=Gvermi11720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2052bp|location=Sequence derived from alignment at ScGOVlb_3404:1784228..1786279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTTTCGTATATTACTCTCACGCCGCGTTCGCGTATAGTACTTGC
GCTGCTCTTTGCTGGCGGTGGCGGAGCCGTGGCAGTCGGACATCTACGGG
CGCTTCAGCGATCACTGCGCTCCGAGCAACAAGCCCTAACGTCTCACGCT
CTCCGGGATTCGAAGAGGAGCTCTTCGCGCGGACGTGCCCATCTGGATGC
TCGCTCTGTACGGCGCCTGCTCGCTATTTTGGGGGTATGTGTTCCGGGTC
CCATGTCTCGCTCTGCAGCGTTGCTTGCACTACAAGGTGTACTACTCACA
GCTCGAACGTTGCTAAGCGATCGCATGTGCGCCTTGGAGGGCGAGTGCGC
TGAGAATATTACTGCGGCGAACTGGGGAGGGTTTCGACGCGTTTTGGGCA
AGTTTGCACTGACTGCCATACCTGCATCAATTGTAACTTCTGCGATGAAG
GCTTCTCAAGTTACGGTCTCACTTGCGCTTCGAACGGCCCTTGCTCGTCA
TTTGCACCGTCTTTACTTAGCGAATCGTGCATATTATTCAGCCAGTGTGT
TGTCCGGTCTGTCGCATCCTGACCAGCGCATCACCGAAGATGTCGAGAAG
TTTTCCGAGACCTTTGCTGAAATCTATTCCTACACCTTCAAACCGTTGTT
GGACATCATCATCTTTTCACGTTCTCTAGCATCGATAATGGGCTACAGAG
GGCAATTTGCACTTTACGTATACTTCATTGTTGTTGGCGCCTTTCTGCGA
CGCATTTCTCCACCGCTCGGTCGCATGACGTCGGAATTTGCAACACTCAG
CGCTGATTTGCGAGCCGCACACTCACGCATTGCTACGAATGCGGAAGAGA
TTGCTTTCAACGATCCACCGGCTGGCCGGGCGGAGATGCTATCCCTCAAC
ACAAGACTTGCCCGCATGATTCGTCACTCGAAACTCTCTGTTATTCAGCG
ATTTATTCAGCAGTGCTTTGATGGCTATCTAGTTAAGTACACCGCATCCA
TTATAGGACTTATAGTTTTTGCCGTTCCCTTATATTACACCCCTGTCGAA
CAACGAGGAGCAACAAATGTGATAGCGGGAAAATACATCAACGCAATGCG
ACTTATGATGCAAACCTCAGCAGCCATGGGGGAGCTTGTGCTCGTGTACA
AGAGAATTAATACTCTGGCAGGCCATACTGACCGCGTCTCAGAGATGATG
GAGAAGATCAGAGAGTTGGGAAAGCCAAACGGCCATTTAGAAGCTTTCCG
TATACTACAAGATCGCGTTTTCAATCCTGACAATGACGTCATTCGACGAT
CTTCGGATTCAGGGAAGAGGAGCATTTCAACTGCCTCGAAGGCGTTTCCG
CCAAAGCGACAGTTCGGCAAAAGTATTATTCTGGAAAACGTTTCGATGTG
GTCTCCCGATGGGGCACCTCTCGTTCAGAAGCTCAGTTTCGAGGTACTGC
AAGGCTCTAGCGTTATCATATTGGGCCCTAACGGTAGTGGAAAGAGCAGT
GTGCTCCGCATGCTCGCTGGACTCTGGCCGCTTCAAGCTGGAACAGTCAC
TTTGCCCGCCCGAACAGATGTTTTCTATTTGTCTCAGCGACCGTATATGT
ATGCTGGTACGCTTCGAGAACAACTCATGTATCCAAGATTACCTGGAGTG
GTTATTGGCGAACAGATTATTTTTGACGAGAAGGCGGCCGTGGCCAGTTT
ATCCAGCGTAGAACTCGGTCATCTCGTTGCCCGATGTGGGGGTTTTGATG
GTGAAATGTCATGGGATGATGTTCTCAGCGGAGGGGAACGGAATCGATTG
GCTGTGGCCCGTCTCCTTTACCACAAGCCAAGTTACGCAGTCTTAGACGA
GTGCACCGCTGCTGTTTCAGCTGACGGTGAAGTTGCGTTGTACCAAGCCA
TGACAAATGCTGGCATTACTCTTCTCTCAGTCGCACACAGAAAAGCTGTC
ATGAAATTTCACGAGCTGGCCGTCGTTTTGGACGGTGCAGGCGAATGGAA
GGTTAAAAAGGTGCAAGACGCAGTGGACAATTCATTCTCGAACGGAGCGT
AG