Gvermi11709.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11709.t1
Unique NameGvermi11709.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length574
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1701946..1703667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11709Gvermi11709Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1701946..1703667 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11709.t1.start1Gvermi11709.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1701946..1701948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11709.t1.CDS1Gvermi11709.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1701946..1703667 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11709.t1.exon1Gvermi11709.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1701946..1703667 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11709.t1.stop1Gvermi11709.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1703665..1703667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11709.t1Gvermi11709.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1701946..1703667 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11709.t1 ID=Gvermi11709.t1|Name=Gvermi11709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=574bp
MFTTTTTKVALFHVCFLFAFSTTLGRPHTQRLGQQKWLKSYVKLAGQTWF
SIYYGKQETAIYTSGRVKYSYDSDIPCLGSKANLTYIGNQTDHFNGVVCG
LHSRDGLRKWCARTCEESIPVLSTVVAGKEHVYTSGITDSMDSILYTIEK
ESGKQRMRMRIQGRISKMDHNRDGVYACGSATNKGGKTGMFIARATTGGL
KWHKIITEVGLKTCLGISAPKYSFSAYVIGIMIGNSNERSLCVMKMERET
GEIEWKTQLSGAHLIPISGDITAEEGVLVTSLNTDTKSKQTQVWIHKLGD
RTGLELWSKQGKNADGLHRSSLASKHQFIYASYNSSGVYVSALASSSTAS
LLGQAEDEQHVWVQRQNGIMSKATDTAFGRNEAAILWGSNDGHSLVQLEA
FNHVRKMEHGNVITRIKLKLNFNVPTDKVSLVKSGICDIMTDVMRGKAQI
VNSFLIVCGMVTKSEAEVVIKKTFEDRDNEGRSYVESSLGLSKRTVRIEG
RLMTVEARNMQDQKHNQAHKSVTLSGQEGNGEENSVTAQSSTSSSGWTWW
KVVMVTIGGVGLIGGVWLAARRL*
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spliced messenger RNA

>Gvermi11709.t1 ID=Gvermi11709.t1|Name=Gvermi11709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at ScGOVlb_3404:1701946..1703667+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACGACCACCACCACAAAAGTTGCCCTATTTCACGTATGTTTCCT
GTTTGCTTTTTCGACTACTCTCGGTCGACCTCACACTCAGAGACTAGGGC
AACAAAAGTGGTTGAAGTCGTACGTGAAACTTGCTGGACAAACGTGGTTC
TCTATATATTATGGCAAACAAGAAACAGCAATCTATACTTCGGGAAGAGT
AAAGTATTCATATGATAGTGACATTCCTTGCCTGGGCTCAAAAGCGAACT
TGACCTATATTGGGAACCAAACAGATCATTTCAACGGTGTGGTTTGTGGA
CTTCATTCCCGGGATGGACTGAGGAAGTGGTGCGCACGCACTTGCGAAGA
GAGCATCCCCGTTCTTTCTACAGTAGTTGCTGGTAAAGAGCATGTGTACA
CCTCTGGAATAACGGACAGTATGGATTCTATCCTATACACTATTGAGAAG
GAAAGTGGAAAACAGAGAATGAGAATGCGCATCCAAGGTCGAATTTCCAA
GATGGACCACAACCGTGATGGCGTGTATGCATGTGGCAGCGCTACAAACA
AAGGAGGCAAAACCGGGATGTTTATTGCTCGCGCAACAACAGGTGGTTTG
AAATGGCACAAAATCATCACAGAAGTTGGATTGAAAACGTGTTTGGGAAT
CAGCGCTCCGAAGTACAGCTTTTCAGCGTATGTTATTGGAATCATGATCG
GTAATTCAAACGAGAGAAGCTTATGCGTGATGAAAATGGAGCGCGAAACT
GGTGAAATTGAGTGGAAAACACAACTCAGTGGTGCTCATCTTATACCAAT
CAGTGGTGACATCACTGCGGAAGAAGGTGTTCTTGTCACATCATTGAATA
CTGACACGAAGAGCAAGCAAACGCAAGTTTGGATACATAAACTTGGAGAC
AGAACTGGACTGGAGCTCTGGTCAAAGCAAGGAAAGAATGCTGATGGACT
ACATAGATCCAGTTTGGCAAGCAAGCACCAATTTATCTACGCATCGTACA
ACAGCAGTGGAGTTTATGTGAGTGCCTTGGCGTCTAGCAGCACTGCATCC
TTGTTGGGACAAGCTGAGGATGAACAACATGTATGGGTGCAACGCCAAAA
TGGGATAATGTCCAAAGCTACCGACACAGCGTTTGGGAGGAATGAAGCCG
CAATTCTATGGGGTTCAAATGATGGACACAGCCTCGTCCAACTAGAAGCA
TTCAATCATGTCAGAAAAATGGAACATGGGAACGTGATCACCCGCATTAA
ACTGAAGTTGAACTTCAACGTACCGACTGACAAAGTGAGCCTGGTGAAAT
CTGGGATATGCGATATAATGACTGATGTAATGCGAGGCAAAGCACAGATT
GTAAACAGTTTCTTGATAGTATGCGGAATGGTGACGAAATCAGAAGCTGA
GGTAGTCATCAAAAAGACATTCGAAGACAGAGATAATGAAGGACGATCCT
ACGTGGAGTCATCCTTAGGCCTGAGCAAGCGCACTGTTCGCATTGAAGGC
AGACTGATGACAGTCGAAGCTCGGAACATGCAGGATCAGAAGCACAACCA
GGCGCACAAATCGGTGACGCTTTCCGGCCAAGAGGGGAACGGAGAAGAAA
ACTCTGTGACCGCGCAGTCGTCCACCAGCTCAAGTGGGTGGACATGGTGG
AAGGTTGTGATGGTGACAATTGGGGGTGTGGGGCTGATTGGTGGAGTGTG
GCTAGCCGCGCGTCGGTTGTAG
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protein sequence of Gvermi11709.t1

>Gvermi11709.t1 ID=Gvermi11709.t1|Name=Gvermi11709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=574bp
MFTTTTTKVALFHVCFLFAFSTTLGRPHTQRLGQQKWLKSYVKLAGQTWF
SIYYGKQETAIYTSGRVKYSYDSDIPCLGSKANLTYIGNQTDHFNGVVCG
LHSRDGLRKWCARTCEESIPVLSTVVAGKEHVYTSGITDSMDSILYTIEK
ESGKQRMRMRIQGRISKMDHNRDGVYACGSATNKGGKTGMFIARATTGGL
KWHKIITEVGLKTCLGISAPKYSFSAYVIGIMIGNSNERSLCVMKMERET
GEIEWKTQLSGAHLIPISGDITAEEGVLVTSLNTDTKSKQTQVWIHKLGD
RTGLELWSKQGKNADGLHRSSLASKHQFIYASYNSSGVYVSALASSSTAS
LLGQAEDEQHVWVQRQNGIMSKATDTAFGRNEAAILWGSNDGHSLVQLEA
FNHVRKMEHGNVITRIKLKLNFNVPTDKVSLVKSGICDIMTDVMRGKAQI
VNSFLIVCGMVTKSEAEVVIKKTFEDRDNEGRSYVESSLGLSKRTVRIEG
RLMTVEARNMQDQKHNQAHKSVTLSGQEGNGEENSVTAQSSTSSSGWTWW
KVVMVTIGGVGLIGGVWLAARRL*
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mRNA from alignment at ScGOVlb_3404:1701946..1703667+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11709.t1 ID=Gvermi11709.t1|Name=Gvermi11709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at ScGOVlb_3404:1701946..1703667+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCACGACCACCACCACAAAAGTTGCCCTATTTCACGTATGTTTCCT
GTTTGCTTTTTCGACTACTCTCGGTCGACCTCACACTCAGAGACTAGGGC
AACAAAAGTGGTTGAAGTCGTACGTGAAACTTGCTGGACAAACGTGGTTC
TCTATATATTATGGCAAACAAGAAACAGCAATCTATACTTCGGGAAGAGT
AAAGTATTCATATGATAGTGACATTCCTTGCCTGGGCTCAAAAGCGAACT
TGACCTATATTGGGAACCAAACAGATCATTTCAACGGTGTGGTTTGTGGA
CTTCATTCCCGGGATGGACTGAGGAAGTGGTGCGCACGCACTTGCGAAGA
GAGCATCCCCGTTCTTTCTACAGTAGTTGCTGGTAAAGAGCATGTGTACA
CCTCTGGAATAACGGACAGTATGGATTCTATCCTATACACTATTGAGAAG
GAAAGTGGAAAACAGAGAATGAGAATGCGCATCCAAGGTCGAATTTCCAA
GATGGACCACAACCGTGATGGCGTGTATGCATGTGGCAGCGCTACAAACA
AAGGAGGCAAAACCGGGATGTTTATTGCTCGCGCAACAACAGGTGGTTTG
AAATGGCACAAAATCATCACAGAAGTTGGATTGAAAACGTGTTTGGGAAT
CAGCGCTCCGAAGTACAGCTTTTCAGCGTATGTTATTGGAATCATGATCG
GTAATTCAAACGAGAGAAGCTTATGCGTGATGAAAATGGAGCGCGAAACT
GGTGAAATTGAGTGGAAAACACAACTCAGTGGTGCTCATCTTATACCAAT
CAGTGGTGACATCACTGCGGAAGAAGGTGTTCTTGTCACATCATTGAATA
CTGACACGAAGAGCAAGCAAACGCAAGTTTGGATACATAAACTTGGAGAC
AGAACTGGACTGGAGCTCTGGTCAAAGCAAGGAAAGAATGCTGATGGACT
ACATAGATCCAGTTTGGCAAGCAAGCACCAATTTATCTACGCATCGTACA
ACAGCAGTGGAGTTTATGTGAGTGCCTTGGCGTCTAGCAGCACTGCATCC
TTGTTGGGACAAGCTGAGGATGAACAACATGTATGGGTGCAACGCCAAAA
TGGGATAATGTCCAAAGCTACCGACACAGCGTTTGGGAGGAATGAAGCCG
CAATTCTATGGGGTTCAAATGATGGACACAGCCTCGTCCAACTAGAAGCA
TTCAATCATGTCAGAAAAATGGAACATGGGAACGTGATCACCCGCATTAA
ACTGAAGTTGAACTTCAACGTACCGACTGACAAAGTGAGCCTGGTGAAAT
CTGGGATATGCGATATAATGACTGATGTAATGCGAGGCAAAGCACAGATT
GTAAACAGTTTCTTGATAGTATGCGGAATGGTGACGAAATCAGAAGCTGA
GGTAGTCATCAAAAAGACATTCGAAGACAGAGATAATGAAGGACGATCCT
ACGTGGAGTCATCCTTAGGCCTGAGCAAGCGCACTGTTCGCATTGAAGGC
AGACTGATGACAGTCGAAGCTCGGAACATGCAGGATCAGAAGCACAACCA
GGCGCACAAATCGGTGACGCTTTCCGGCCAAGAGGGGAACGGAGAAGAAA
ACTCTGTGACCGCGCAGTCGTCCACCAGCTCAAGTGGGTGGACATGGTGG
AAGGTTGTGATGGTGACAATTGGGGGTGTGGGGCTGATTGGTGGAGTGTG
GCTAGCCGCGCGTCGGTTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1701946..1703667+

>Gvermi11709.t1 ID=Gvermi11709.t1|Name=Gvermi11709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1722bp|location=Sequence derived from alignment at ScGOVlb_3404:1701946..1703667+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCACGACCACCACCACAAAAGTTGCCCTATTTCACGTATGTTTCCT
GTTTGCTTTTTCGACTACTCTCGGTCGACCTCACACTCAGAGACTAGGGC
AACAAAAGTGGTTGAAGTCGTACGTGAAACTTGCTGGACAAACGTGGTTC
TCTATATATTATGGCAAACAAGAAACAGCAATCTATACTTCGGGAAGAGT
AAAGTATTCATATGATAGTGACATTCCTTGCCTGGGCTCAAAAGCGAACT
TGACCTATATTGGGAACCAAACAGATCATTTCAACGGTGTGGTTTGTGGA
CTTCATTCCCGGGATGGACTGAGGAAGTGGTGCGCACGCACTTGCGAAGA
GAGCATCCCCGTTCTTTCTACAGTAGTTGCTGGTAAAGAGCATGTGTACA
CCTCTGGAATAACGGACAGTATGGATTCTATCCTATACACTATTGAGAAG
GAAAGTGGAAAACAGAGAATGAGAATGCGCATCCAAGGTCGAATTTCCAA
GATGGACCACAACCGTGATGGCGTGTATGCATGTGGCAGCGCTACAAACA
AAGGAGGCAAAACCGGGATGTTTATTGCTCGCGCAACAACAGGTGGTTTG
AAATGGCACAAAATCATCACAGAAGTTGGATTGAAAACGTGTTTGGGAAT
CAGCGCTCCGAAGTACAGCTTTTCAGCGTATGTTATTGGAATCATGATCG
GTAATTCAAACGAGAGAAGCTTATGCGTGATGAAAATGGAGCGCGAAACT
GGTGAAATTGAGTGGAAAACACAACTCAGTGGTGCTCATCTTATACCAAT
CAGTGGTGACATCACTGCGGAAGAAGGTGTTCTTGTCACATCATTGAATA
CTGACACGAAGAGCAAGCAAACGCAAGTTTGGATACATAAACTTGGAGAC
AGAACTGGACTGGAGCTCTGGTCAAAGCAAGGAAAGAATGCTGATGGACT
ACATAGATCCAGTTTGGCAAGCAAGCACCAATTTATCTACGCATCGTACA
ACAGCAGTGGAGTTTATGTGAGTGCCTTGGCGTCTAGCAGCACTGCATCC
TTGTTGGGACAAGCTGAGGATGAACAACATGTATGGGTGCAACGCCAAAA
TGGGATAATGTCCAAAGCTACCGACACAGCGTTTGGGAGGAATGAAGCCG
CAATTCTATGGGGTTCAAATGATGGACACAGCCTCGTCCAACTAGAAGCA
TTCAATCATGTCAGAAAAATGGAACATGGGAACGTGATCACCCGCATTAA
ACTGAAGTTGAACTTCAACGTACCGACTGACAAAGTGAGCCTGGTGAAAT
CTGGGATATGCGATATAATGACTGATGTAATGCGAGGCAAAGCACAGATT
GTAAACAGTTTCTTGATAGTATGCGGAATGGTGACGAAATCAGAAGCTGA
GGTAGTCATCAAAAAGACATTCGAAGACAGAGATAATGAAGGACGATCCT
ACGTGGAGTCATCCTTAGGCCTGAGCAAGCGCACTGTTCGCATTGAAGGC
AGACTGATGACAGTCGAAGCTCGGAACATGCAGGATCAGAAGCACAACCA
GGCGCACAAATCGGTGACGCTTTCCGGCCAAGAGGGGAACGGAGAAGAAA
ACTCTGTGACCGCGCAGTCGTCCACCAGCTCAAGTGGGTGGACATGGTGG
AAGGTTGTGATGGTGACAATTGGGGGTGTGGGGCTGATTGGTGGAGTGTG
GCTAGCCGCGCGTCGGTTGTAG
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