Gvermi11696.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11696.t1
Unique NameGvermi11696.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1662055..1662687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11696Gvermi11696Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1662055..1662687 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11696.t1.stop1Gvermi11696.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1662055..1662057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11696.t1.CDS1Gvermi11696.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1662055..1662687 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11696.t1.exon1Gvermi11696.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1662055..1662687 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11696.t1.start1Gvermi11696.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1662685..1662687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11696.t1Gvermi11696.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1662055..1662687 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11696.t1 ID=Gvermi11696.t1|Name=Gvermi11696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MMRTSSSPRTRRLRCQRCSEKKFRTTQDLALHVLSKHAKLQLPTTPADDA
RSITLSSPLLSGEAEELDQLLASALRSQLVGDHIDGFKSRVVEHSISTMK
TRNSSPKRPRQRNTAKGQKKHSRALNTETATTGSCKAPKVLVAQCSEQRF
LRTPIHRVTHLDEVCTPVPGESIGPCSHDLFLAQCLSGQISLVPTPLKQT
TTLNFANVLF*
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spliced messenger RNA

>Gvermi11696.t1 ID=Gvermi11696.t1|Name=Gvermi11696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_3404:1662055..1662687- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGAACTTCCTCCTCGCCGCGCACCAGACGTCTTCGTTGCCAACG
TTGTTCAGAGAAAAAGTTTCGCACAACGCAAGACCTCGCCTTACATGTGC
TTTCGAAACATGCGAAACTTCAGCTTCCGACCACTCCTGCCGACGACGCG
CGTTCAATAACATTGAGTTCACCGTTGCTATCCGGTGAAGCAGAGGAATT
AGACCAACTTCTCGCCAGCGCTTTGCGCTCCCAACTTGTCGGTGACCACA
TTGACGGCTTTAAATCTCGAGTCGTAGAGCATTCCATCAGCACCATGAAG
ACAAGAAATTCGTCGCCGAAACGCCCTCGACAGCGAAACACCGCAAAGGG
TCAAAAGAAGCACTCACGGGCTCTAAACACCGAAACGGCCACCACTGGGT
CTTGCAAAGCTCCGAAGGTACTTGTTGCCCAATGTTCAGAACAACGCTTT
CTGCGCACTCCTATTCATAGAGTTACACATTTAGATGAGGTTTGCACACC
GGTTCCGGGCGAAAGCATAGGTCCATGTTCACATGACCTTTTCCTCGCGC
AGTGTCTTTCTGGTCAAATATCATTGGTTCCTACACCTCTCAAACAGACG
ACCACTCTCAACTTTGCCAACGTATTGTTCTAG
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protein sequence of Gvermi11696.t1

>Gvermi11696.t1 ID=Gvermi11696.t1|Name=Gvermi11696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MMRTSSSPRTRRLRCQRCSEKKFRTTQDLALHVLSKHAKLQLPTTPADDA
RSITLSSPLLSGEAEELDQLLASALRSQLVGDHIDGFKSRVVEHSISTMK
TRNSSPKRPRQRNTAKGQKKHSRALNTETATTGSCKAPKVLVAQCSEQRF
LRTPIHRVTHLDEVCTPVPGESIGPCSHDLFLAQCLSGQISLVPTPLKQT
TTLNFANVLF*
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mRNA from alignment at ScGOVlb_3404:1662055..1662687-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11696.t1 ID=Gvermi11696.t1|Name=Gvermi11696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_3404:1662055..1662687- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGAACTTCCTCCTCGCCGCGCACCAGACGTCTTCGTTGCCAACG
TTGTTCAGAGAAAAAGTTTCGCACAACGCAAGACCTCGCCTTACATGTGC
TTTCGAAACATGCGAAACTTCAGCTTCCGACCACTCCTGCCGACGACGCG
CGTTCAATAACATTGAGTTCACCGTTGCTATCCGGTGAAGCAGAGGAATT
AGACCAACTTCTCGCCAGCGCTTTGCGCTCCCAACTTGTCGGTGACCACA
TTGACGGCTTTAAATCTCGAGTCGTAGAGCATTCCATCAGCACCATGAAG
ACAAGAAATTCGTCGCCGAAACGCCCTCGACAGCGAAACACCGCAAAGGG
TCAAAAGAAGCACTCACGGGCTCTAAACACCGAAACGGCCACCACTGGGT
CTTGCAAAGCTCCGAAGGTACTTGTTGCCCAATGTTCAGAACAACGCTTT
CTGCGCACTCCTATTCATAGAGTTACACATTTAGATGAGGTTTGCACACC
GGTTCCGGGCGAAAGCATAGGTCCATGTTCACATGACCTTTTCCTCGCGC
AGTGTCTTTCTGGTCAAATATCATTGGTTCCTACACCTCTCAAACAGACG
ACCACTCTCAACTTTGCCAACGTATTGTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1662055..1662687-

>Gvermi11696.t1 ID=Gvermi11696.t1|Name=Gvermi11696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_3404:1662055..1662687- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGAACTTCCTCCTCGCCGCGCACCAGACGTCTTCGTTGCCAACG
TTGTTCAGAGAAAAAGTTTCGCACAACGCAAGACCTCGCCTTACATGTGC
TTTCGAAACATGCGAAACTTCAGCTTCCGACCACTCCTGCCGACGACGCG
CGTTCAATAACATTGAGTTCACCGTTGCTATCCGGTGAAGCAGAGGAATT
AGACCAACTTCTCGCCAGCGCTTTGCGCTCCCAACTTGTCGGTGACCACA
TTGACGGCTTTAAATCTCGAGTCGTAGAGCATTCCATCAGCACCATGAAG
ACAAGAAATTCGTCGCCGAAACGCCCTCGACAGCGAAACACCGCAAAGGG
TCAAAAGAAGCACTCACGGGCTCTAAACACCGAAACGGCCACCACTGGGT
CTTGCAAAGCTCCGAAGGTACTTGTTGCCCAATGTTCAGAACAACGCTTT
CTGCGCACTCCTATTCATAGAGTTACACATTTAGATGAGGTTTGCACACC
GGTTCCGGGCGAAAGCATAGGTCCATGTTCACATGACCTTTTCCTCGCGC
AGTGTCTTTCTGGTCAAATATCATTGGTTCCTACACCTCTCAAACAGACG
ACCACTCTCAACTTTGCCAACGTATTGTTCTAG
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