Gvermi11694.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11694.t1
Unique NameGvermi11694.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1654202..1657862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007509510.1
Max annot lvl33090|Viridiplantae
Evalue3.05e-08
EggNOG OGs28I0W@1|root,2QQBM@2759|Eukaryota,37QCD@33090|Viridiplantae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11694Gvermi11694Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1654202..1657862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11694.t1Gvermi11694.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1654202..1657862 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11694.t1.stop1Gvermi11694.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1654202..1654204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11694.t1.CDS1Gvermi11694.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1654202..1655157 -
Gvermi11694.t1.CDS2Gvermi11694.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1657177..1657553 -
Gvermi11694.t1.CDS3Gvermi11694.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1657619..1657707 -
Gvermi11694.t1.CDS4Gvermi11694.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1657809..1657862 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11694.t1.exon1Gvermi11694.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1654202..1655157 -
Gvermi11694.t1.exon2Gvermi11694.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1657177..1657553 -
Gvermi11694.t1.exon3Gvermi11694.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1657619..1657707 -
Gvermi11694.t1.exon4Gvermi11694.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1657809..1657862 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11694.t1.intron1Gvermi11694.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1655158..1657176 -
Gvermi11694.t1.intron2Gvermi11694.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1657554..1657618 -
Gvermi11694.t1.intron3Gvermi11694.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1657708..1657808 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11694.t1.start1Gvermi11694.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1657860..1657862 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11694.t1 ID=Gvermi11694.t1|Name=Gvermi11694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp
MLIVERTTKQALLAGCATRAKSGASHIKLDTDDRYLNNLMPNPVRAVRHG
LVRLALRHGPQRHVLVPMYYIVSPPRNPHPLPDLRTSQRRLLQLTNHLRR
RNSLHSVKLSSSLSHIAQRHSHYQGSKAKATHKGRHGFHLKDRLKEAKFD
FRYAGENVASGQRTVDDVFRSWCLTTYEMGLNQKVLTLFSLLHIAEPSYY
ELVESSIEGNVVLFELMAPETATDGNSKLRTLRIPVFPPSALEKAARSLN
ATAQLSAMNLRQTNWYVADLPVDHISVPGRNGFMLQIPRLVLNVVAACLP
CPELNAALIHAFSARTLVTPFRLLQLLNADLVTRRRLTYAWRAVASTSIK
ANARVLDNLRRNRVAWEALNEVRDANVALLYGAWHSGWFCRRAEADGMKF
VRQSWITAMVLPSVPIRRFDVIRWALFTALYCTYAGLDWIWCIERLAQSF
TGGFHVDVSMLLLYLTRHVAPYWAFRRWFDEWDTASRTDDM*
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spliced messenger RNA

>Gvermi11694.t1 ID=Gvermi11694.t1|Name=Gvermi11694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at ScGOVlb_3404:1654202..1657862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGATCGTAGAGAGAACCACGAAGCAAGCACTTCTTGCTGGTTGCGC
TACTAGAGCCAAGTCGGGAGCTAGTCACATCAAGCTTGACACGGACGACC
GTTATCTTAATAACTTAATGCCAAATCCTGTGCGCGCCGTTCGCCACGGT
CTCGTGCGTCTAGCCCTTCGCCATGGTCCGCAGCGACATGTCCTCGTGCC
CATGTATTATATAGTGTCGCCACCACGCAATCCTCATCCACTTCCTGATC
TTCGTACCTCTCAACGACGTCTACTTCAACTGACAAACCATTTGAGAAGG
CGCAATTCACTTCATTCCGTGAAACTCTCCTCATCGCTATCGCACATAGC
ACAGAGACACAGCCACTATCAAGGAAGCAAGGCAAAAGCTACGCACAAAG
GTCGACATGGGTTTCACCTGAAGGACCGGTTGAAAGAAGCAAAGTTCGAT
TTTCGGTATGCCGGCGAGAACGTTGCGTCGGGGCAGCGAACTGTTGATGA
TGTGTTTCGTTCTTGGTGCCTCACAACTTATGAGATGGGATTGAATCAAA
AGGTTCTAACTCTATTTTCCCTACTGCACATAGCTGAGCCGTCCTATTAC
GAATTGGTTGAGTCATCTATTGAAGGTAATGTAGTTCTTTTTGAACTCAT
GGCTCCTGAAACGGCCACTGATGGAAACTCAAAGCTAAGAACTTTGCGAA
TCCCAGTCTTCCCACCATCTGCTTTAGAAAAAGCGGCTCGCTCTTTAAAT
GCCACTGCTCAATTGAGTGCCATGAACCTGAGGCAAACAAATTGGTACGT
TGCGGATTTACCCGTTGACCACATTTCTGTACCCGGTCGCAACGGTTTTA
TGTTACAAATACCGCGACTAGTTCTAAATGTTGTCGCCGCATGTCTGCCA
TGTCCAGAACTGAACGCCGCTCTGATACATGCGTTTTCGGCGCGCACCCT
GGTTACCCCCTTCAGGCTGCTGCAGCTTCTAAACGCAGATTTGGTGACAA
GGCGACGCCTTACGTATGCATGGCGAGCGGTTGCAAGCACCAGTATAAAG
GCAAATGCACGTGTGCTCGATAATCTCCGCCGAAATCGAGTCGCATGGGA
AGCATTGAATGAAGTACGTGACGCGAATGTTGCGCTGTTGTACGGAGCAT
GGCACAGTGGCTGGTTTTGTCGTCGAGCTGAAGCTGATGGAATGAAATTC
GTTCGTCAGAGCTGGATTACGGCCATGGTTTTGCCGTCCGTACCAATTCG
CCGGTTTGATGTTATCCGTTGGGCACTGTTTACGGCGCTGTATTGCACCT
ATGCTGGACTAGATTGGATTTGGTGCATTGAACGTTTAGCTCAGTCCTTT
ACAGGAGGTTTTCACGTTGACGTGTCGATGCTTCTTTTGTATTTAACACG
CCATGTTGCTCCGTACTGGGCGTTTAGACGTTGGTTCGATGAGTGGGATA
CTGCTTCCAGGACTGATGATATGTAA
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protein sequence of Gvermi11694.t1

>Gvermi11694.t1 ID=Gvermi11694.t1|Name=Gvermi11694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=492bp
MLIVERTTKQALLAGCATRAKSGASHIKLDTDDRYLNNLMPNPVRAVRHG
LVRLALRHGPQRHVLVPMYYIVSPPRNPHPLPDLRTSQRRLLQLTNHLRR
RNSLHSVKLSSSLSHIAQRHSHYQGSKAKATHKGRHGFHLKDRLKEAKFD
FRYAGENVASGQRTVDDVFRSWCLTTYEMGLNQKVLTLFSLLHIAEPSYY
ELVESSIEGNVVLFELMAPETATDGNSKLRTLRIPVFPPSALEKAARSLN
ATAQLSAMNLRQTNWYVADLPVDHISVPGRNGFMLQIPRLVLNVVAACLP
CPELNAALIHAFSARTLVTPFRLLQLLNADLVTRRRLTYAWRAVASTSIK
ANARVLDNLRRNRVAWEALNEVRDANVALLYGAWHSGWFCRRAEADGMKF
VRQSWITAMVLPSVPIRRFDVIRWALFTALYCTYAGLDWIWCIERLAQSF
TGGFHVDVSMLLLYLTRHVAPYWAFRRWFDEWDTASRTDDM*
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mRNA from alignment at ScGOVlb_3404:1654202..1657862-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11694.t1 ID=Gvermi11694.t1|Name=Gvermi11694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3661bp|location=Sequence derived from alignment at ScGOVlb_3404:1654202..1657862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGATCGTAGAGAGAACCACGAAGCAAGCACTTCTTGCTGGTTGCGC
TACTGTACGTTATACTGTACCTTACCAAATTGAAGTGGCGGTCAAGTCTT
GAACAAGTCTATGGCATGCATGTCTTTTTAGTGAACCACAGACAATCGTC
TCGAGAGAGCCAAGTCGGGAGCTAGTCACATCAAGCTTGACACGGACGAC
CGTTATCTTAATAACTTAATGCCAAATCCTGTGCGCGCCGTTCGGTGAGC
TACCTGTTCCTGCCATTCTTCCGTGCGTTCCCTCGCTCACACTCTGACCT
CCATTCTAGCCACGGTCTCGTGCGTCTAGCCCTTCGCCATGGTCCGCAGC
GACATGTCCTCGTGCCCATGTATTATATAGTGTCGCCACCACGCAATCCT
CATCCACTTCCTGATCTTCGTACCTCTCAACGACGTCTACTTCAACTGAC
AAACCATTTGAGAAGGCGCAATTCACTTCATTCCGTGAAACTCTCCTCAT
CGCTATCGCACATAGCACAGAGACACAGCCACTATCAAGGAAGCAAGGCA
AAAGCTACGCACAAAGGTCGACATGGGTTTCACCTGAAGGACCGGTTGAA
AGAAGCAAAGTTCGATTTTCGGTATGCCGGCGAGAACGTTGCGTCGGGGC
AGCGAACTGTTGATGATGTGTTTCGTTCTTGGTGCCGTAGCAAAGGCCAT
AGGCGTAATTTACTGAGCAACAAGGTGGATGTTATGGGACTAGGTGTTAG
CAGCGGCTGGGATGGGCGGCTCTATTGGACGCAATTGTTTGCGAGTAGAT
GATATATTTAATTATTTATGTCTTCAACATGTTCCCTCTAAGTTCGCCTT
CCGTTGTAATGAATCTGCATGGACTCGTCATCAATTCATCAAACTTCGGC
AAAGCTTTCGTAGACCCACAGTGGCGCCCCGAATATGCGGGGATCTGGAC
ATCTTTGTCGTCGTCGATCAATAGTGACATCATCAATGCATGGAATCGAA
CTAATCGTTGGTCTGTACAAGTACAGGGTATGGCGTTCACTCTGAAATGT
GTTGTTCTACTGTTCTGCAAACTCTTATTCTTTCTTCCTGTTCACTTCTG
TGTTATAAGGAGCATTTTAAACAAGTGTGTTGCTTCGTCTCATGTACACG
AATATATTTTACCCTGTTTCTTTTGAACAACTTGCAGCAATTGTTTTCTT
ATGCTCAGAATTCATCAGTGCAAGCTGCAACGCGGAGCAAACTTCTATGG
CTTTTTACTGGCAAGCTTTAATGCGGGTGCAGAAAGCCCGGTGCCCCGCT
CCTTTTTCGTGCCTTAAGCGGCGCGGTAGAGTAACACCTAATGCGGGTTC
TCACATTCGACGCAGAAGAACTTCTGGAGATGTCGAAGCATTTAATTCAT
GAATAAAAAATGATAAAGTACTGAGCTGACGTGGATTGAAAAGCAGTTTG
CCTTTCTTTGCTCGAGTAAGCTCGTTGCAAAAAACGGAAGTACAGACAGC
TAAACAGCTCTGTAACACAGTAAATGGATTAAAATGCCTACATGTTTTGA
GTCAGGGAAATGAACTTCGAGAAGACGTTGACGAAATCTGGGATCCTCTT
AGTAATATCGCAGGAGATCGTCCTTATGTTGTGCGAAACTATCTACACAC
GAGCAAAAAGACCTTTCGGCCGGGAGCAAGCAATTAGATTTAGTAGATCT
GCACAGATTCTCAAAGACAGCGAGCAACATTGTGCGTCTTGGAGACTTTG
AGCTCAGGGCGACTTTTTCTTGTCGATCAACAATCGCATTTTTTTTAAGA
GAATGTTGGCTATGATGAAATCAGTTTTCAGACAAACCCTAGAATGGTAA
GTGGGGCTTTGACTGACATCTCTCTCGAATCATAGAAAAGTGGTGCTTTG
ACCTGATAACTGTTTGTCGAATTCCAGATAAACTTTCCATTCCCTCTTAA
CCCACTCAGTAAAGCGTACCCAGATGGGGGAGAGGGGCGCGGCACATACT
TCGGCATCGCAGAGAAGCAATATCTTCCACGACACCAAATGGATGTGCTT
CTGTGGACCCCAAATTGGACAGAGAAAATCTATTTGACCTTTTTGGGTTG
ACGTAAAATTACCTTAGCATGCCGGTAGAGTCAAATCTCGAAAACCCCGT
CATCAGTGGAGTTGCTGACCTCGGCTTTCTGTAATTGCTGCCGTGGGCAA
AACAAATTGAGATCCCAACAACTCCCATCTTAAATATGCAATCTGTTTAT
GTGCGGGAACGCGACATCTGCCCCTTCCATCTTTAGTTTTCTTCGGGAAC
ACCCCAAGATGTTCATATTCGTGACTTTGGATTACTCAGGAATCTTGGGC
ATTCCCAGCCAGATGTTGCCTCGCTAGGTGACATTCACTAGCCAAATCCA
TTGCGCTCGGTACGAGATCCTGGATGCCAGATTGCTGCAGCCGATATAAG
CTGTTCTTCTTCCCTAGGCCTTTCCGAACGGGGAAATCGGCATGGTGTCG
ACGTTTCGTGGAAGTTCTGTCGAGTGCGTAGCTGCTGGGATTCCATGTGG
TTATGTCGTTTACTTTCACAGCCCTAATCTTCATAAGCCATGTTTTCACC
GCTGTAGGACCTCCCGAACAGTGGCGGTTTTGTCGCCTCGAGCACCAAGA
ACATTTGTTCGCTTGATCCCTGAACGTGATGGCACGATCCACCTTCAAAC
TGCAGTCACAACTTATGAGATGGGATTGAATCAAAAGGTTCTAACTCTAT
TTTCCCTACTGCACATAGCTGAGCCGTCCTATTACGAATTGGTTGAGTCA
TCTATTGAAGGTAATGTAGTTCTTTTTGAACTCATGGCTCCTGAAACGGC
CACTGATGGAAACTCAAAGCTAAGAACTTTGCGAATCCCAGTCTTCCCAC
CATCTGCTTTAGAAAAAGCGGCTCGCTCTTTAAATGCCACTGCTCAATTG
AGTGCCATGAACCTGAGGCAAACAAATTGGTACGTTGCGGATTTACCCGT
TGACCACATTTCTGTACCCGGTCGCAACGGTTTTATGTTACAAATACCGC
GACTAGTTCTAAATGTTGTCGCCGCATGTCTGCCATGTCCAGAACTGAAC
GCCGCTCTGATACATGCGTTTTCGGCGCGCACCCTGGTTACCCCCTTCAG
GCTGCTGCAGCTTCTAAACGCAGATTTGGTGACAAGGCGACGCCTTACGT
ATGCATGGCGAGCGGTTGCAAGCACCAGTATAAAGGCAAATGCACGTGTG
CTCGATAATCTCCGCCGAAATCGAGTCGCATGGGAAGCATTGAATGAAGT
ACGTGACGCGAATGTTGCGCTGTTGTACGGAGCATGGCACAGTGGCTGGT
TTTGTCGTCGAGCTGAAGCTGATGGAATGAAATTCGTTCGTCAGAGCTGG
ATTACGGCCATGGTTTTGCCGTCCGTACCAATTCGCCGGTTTGATGTTAT
CCGTTGGGCACTGTTTACGGCGCTGTATTGCACCTATGCTGGACTAGATT
GGATTTGGTGCATTGAACGTTTAGCTCAGTCCTTTACAGGAGGTTTTCAC
GTTGACGTGTCGATGCTTCTTTTGTATTTAACACGCCATGTTGCTCCGTA
CTGGGCGTTTAGACGTTGGTTCGATGAGTGGGATACTGCTTCCAGGACTG
ATGATATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1654202..1657862-

>Gvermi11694.t1 ID=Gvermi11694.t1|Name=Gvermi11694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1476bp|location=Sequence derived from alignment at ScGOVlb_3404:1654202..1657862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGATCGTAGAGAGAACCACGAAGCAAGCACTTCTTGCTGGTTGCGC
TACTAGAGCCAAGTCGGGAGCTAGTCACATCAAGCTTGACACGGACGACC
GTTATCTTAATAACTTAATGCCAAATCCTGTGCGCGCCGTTCGCCACGGT
CTCGTGCGTCTAGCCCTTCGCCATGGTCCGCAGCGACATGTCCTCGTGCC
CATGTATTATATAGTGTCGCCACCACGCAATCCTCATCCACTTCCTGATC
TTCGTACCTCTCAACGACGTCTACTTCAACTGACAAACCATTTGAGAAGG
CGCAATTCACTTCATTCCGTGAAACTCTCCTCATCGCTATCGCACATAGC
ACAGAGACACAGCCACTATCAAGGAAGCAAGGCAAAAGCTACGCACAAAG
GTCGACATGGGTTTCACCTGAAGGACCGGTTGAAAGAAGCAAAGTTCGAT
TTTCGGTATGCCGGCGAGAACGTTGCGTCGGGGCAGCGAACTGTTGATGA
TGTGTTTCGTTCTTGGTGCCTCACAACTTATGAGATGGGATTGAATCAAA
AGGTTCTAACTCTATTTTCCCTACTGCACATAGCTGAGCCGTCCTATTAC
GAATTGGTTGAGTCATCTATTGAAGGTAATGTAGTTCTTTTTGAACTCAT
GGCTCCTGAAACGGCCACTGATGGAAACTCAAAGCTAAGAACTTTGCGAA
TCCCAGTCTTCCCACCATCTGCTTTAGAAAAAGCGGCTCGCTCTTTAAAT
GCCACTGCTCAATTGAGTGCCATGAACCTGAGGCAAACAAATTGGTACGT
TGCGGATTTACCCGTTGACCACATTTCTGTACCCGGTCGCAACGGTTTTA
TGTTACAAATACCGCGACTAGTTCTAAATGTTGTCGCCGCATGTCTGCCA
TGTCCAGAACTGAACGCCGCTCTGATACATGCGTTTTCGGCGCGCACCCT
GGTTACCCCCTTCAGGCTGCTGCAGCTTCTAAACGCAGATTTGGTGACAA
GGCGACGCCTTACGTATGCATGGCGAGCGGTTGCAAGCACCAGTATAAAG
GCAAATGCACGTGTGCTCGATAATCTCCGCCGAAATCGAGTCGCATGGGA
AGCATTGAATGAAGTACGTGACGCGAATGTTGCGCTGTTGTACGGAGCAT
GGCACAGTGGCTGGTTTTGTCGTCGAGCTGAAGCTGATGGAATGAAATTC
GTTCGTCAGAGCTGGATTACGGCCATGGTTTTGCCGTCCGTACCAATTCG
CCGGTTTGATGTTATCCGTTGGGCACTGTTTACGGCGCTGTATTGCACCT
ATGCTGGACTAGATTGGATTTGGTGCATTGAACGTTTAGCTCAGTCCTTT
ACAGGAGGTTTTCACGTTGACGTGTCGATGCTTCTTTTGTATTTAACACG
CCATGTTGCTCCGTACTGGGCGTTTAGACGTTGGTTCGATGAGTGGGATA
CTGCTTCCAGGACTGATGATATGTAA
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