Gvermi11693.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11693.t1
Unique Name	Gvermi11693.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	529

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:1652457..1654043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010259334.1
PFAMs	Pyr_redox_2,Pyr_redox_dim
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834
KEGG ko	ko:K00382
KEGG Reaction	R00209,R01221,R01698,R03815,R07618,R08549
KEGG Pathway	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00009,M00011,M00036,M00307,M00532
Evalue	4.43e-228
EggNOG OGs	COG1249@1\|root,KOG1335@2759\|Eukaryota,37IJR@33090\|Viridiplantae,3GEBQ@35493\|Streptophyta
EC	1.8.1.4
Description	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11693	Gvermi11693	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 1652457..1654043 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11693.t1.start1	Gvermi11693.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 1652457..1652459 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11693.t1.CDS1	Gvermi11693.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 1652457..1654043 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11693.t1.exon1	Gvermi11693.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 1652457..1654043 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11693.t1.stop1	Gvermi11693.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 1654041..1654043 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11693.t1	Gvermi11693.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 1652457..1654043 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:1652457..1654043+
coding sequence from alignment at ScGOVlb_3404:1652457..1654043+

mRNA sequence

>Gvermi11693.t1 ID=Gvermi11693.t1|Name=Gvermi11693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=529bp
MAFISSVCAKTWNYHPQRSFLCHKTSFIQTAARRSAHIRKNSLASKTTPR
AAFDYDLAIIGAGVGGHGAALHAVAKGLKVCIFEARDVGGTCVNRGCVPS
KALLAAAGRIREMKDADHLRALGISLDGVSYDRQGVANHANGLASKVKGN
MANSLGALGVTIINARATLTGAQSIKGSDGKIYTAQNIILAPGSVPFVPR
GVEIDGKTVFTSDDALKMEWVPDWVAIVGSGYIGLEFSDVYTALGSNVTF
VEAMPNLMPGFDPEIARLAQRLLINPRPIDFHTNVFASKVTPGIPGKQPV
IIDLIDAGSKEPLDQLEVDAAMIATGRAPYTEGLGLESVQVEIQRGFVPV
DERMRVLDKNGAVIDHLYAIGDVNGKMMLAHAASAQGISAVENIVGKEHQ
VDHNAVPAACFTHPEISMVGLTEPAAKEKASLEGFDLGKSVGHFRANSKA
LAEGEGDGIAKLLFNKSNGKILGVHIIGLHAADLIQECSNAVARGTTVDE
LAFCVHTHPTLSEVVDEAIKGAVGMAAH*

spliced messenger RNA

>Gvermi11693.t1 ID=Gvermi11693.t1|Name=Gvermi11693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at ScGOVlb_3404:1652457..1654043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTATCTCCTCAGTTTGCGCGAAAACCTGGAATTATCACCCGCA
AAGATCATTTCTCTGTCACAAAACCTCATTCATTCAGACTGCTGCTCGTC
GTTCAGCGCATATCCGAAAGAATTCTTTGGCATCAAAGACAACTCCTCGC
GCTGCTTTTGATTACGATCTGGCTATTATTGGCGCCGGTGTTGGGGGACA
TGGGGCAGCCCTACATGCTGTTGCGAAGGGACTTAAGGTCTGTATTTTCG
AAGCGCGTGATGTCGGTGGTACGTGCGTCAATAGAGGTTGTGTTCCTTCG
AAAGCTCTCCTAGCAGCCGCTGGTCGCATTCGAGAAATGAAGGACGCTGA
TCATCTGCGCGCTCTGGGCATATCTCTCGATGGAGTTTCTTATGATCGAC
AGGGTGTAGCCAATCATGCAAACGGCCTAGCGTCCAAAGTAAAGGGAAAC
ATGGCAAACTCACTAGGTGCTCTTGGAGTCACGATCATAAATGCAAGAGC
AACACTCACAGGAGCTCAAAGTATAAAAGGATCGGACGGAAAGATTTATA
CAGCACAAAATATCATTCTAGCGCCTGGCAGTGTTCCCTTTGTTCCGAGA
GGTGTTGAAATTGACGGCAAAACAGTCTTTACAAGCGACGATGCGTTGAA
GATGGAATGGGTTCCTGATTGGGTAGCTATTGTTGGATCGGGTTACATTG
GTCTTGAATTTTCCGACGTATACACTGCATTGGGCTCTAACGTGACTTTT
GTTGAGGCCATGCCTAATCTAATGCCTGGCTTTGACCCTGAAATTGCCCG
GTTGGCGCAAAGGCTTCTAATCAATCCTCGGCCAATTGATTTTCACACCA
ACGTTTTCGCGTCGAAAGTTACACCAGGTATCCCCGGAAAACAACCTGTG
ATCATTGATCTGATCGACGCTGGTAGCAAAGAACCTTTGGACCAGCTAGA
AGTGGATGCTGCAATGATTGCCACAGGCCGTGCGCCCTACACTGAAGGCT
TAGGTCTGGAGTCGGTGCAGGTGGAAATCCAGCGAGGTTTTGTTCCTGTA
GACGAACGCATGCGTGTCCTTGACAAGAATGGAGCAGTCATCGACCATTT
ATACGCCATTGGAGATGTCAACGGCAAGATGATGCTTGCACATGCAGCTT
CCGCGCAAGGTATCAGCGCAGTCGAGAACATTGTCGGGAAAGAACACCAA
GTTGACCACAATGCCGTTCCTGCTGCTTGTTTCACGCATCCGGAAATATC
GATGGTGGGGCTAACAGAGCCTGCTGCGAAAGAAAAGGCGTCTTTAGAAG
GTTTTGATTTGGGGAAATCAGTCGGGCACTTCCGAGCAAATTCGAAAGCT
TTAGCAGAGGGAGAAGGAGATGGTATTGCAAAACTGCTTTTCAACAAGAG
TAATGGAAAAATATTAGGCGTCCATATTATTGGACTTCATGCAGCAGACT
TGATACAGGAATGTTCAAACGCTGTAGCTCGCGGTACAACGGTCGACGAA
CTTGCATTTTGTGTACATACCCATCCGACACTCAGCGAGGTTGTTGATGA
AGCCATCAAGGGCGCTGTTGGAATGGCTGCCCACTAA

protein sequence of Gvermi11693.t1

>Gvermi11693.t1 ID=Gvermi11693.t1|Name=Gvermi11693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=529bp
MAFISSVCAKTWNYHPQRSFLCHKTSFIQTAARRSAHIRKNSLASKTTPR
AAFDYDLAIIGAGVGGHGAALHAVAKGLKVCIFEARDVGGTCVNRGCVPS
KALLAAAGRIREMKDADHLRALGISLDGVSYDRQGVANHANGLASKVKGN
MANSLGALGVTIINARATLTGAQSIKGSDGKIYTAQNIILAPGSVPFVPR
GVEIDGKTVFTSDDALKMEWVPDWVAIVGSGYIGLEFSDVYTALGSNVTF
VEAMPNLMPGFDPEIARLAQRLLINPRPIDFHTNVFASKVTPGIPGKQPV
IIDLIDAGSKEPLDQLEVDAAMIATGRAPYTEGLGLESVQVEIQRGFVPV
DERMRVLDKNGAVIDHLYAIGDVNGKMMLAHAASAQGISAVENIVGKEHQ
VDHNAVPAACFTHPEISMVGLTEPAAKEKASLEGFDLGKSVGHFRANSKA
LAEGEGDGIAKLLFNKSNGKILGVHIIGLHAADLIQECSNAVARGTTVDE
LAFCVHTHPTLSEVVDEAIKGAVGMAAH*

mRNA from alignment at ScGOVlb_3404:1652457..1654043+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11693.t1 ID=Gvermi11693.t1|Name=Gvermi11693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at ScGOVlb_3404:1652457..1654043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTTATCTCCTCAGTTTGCGCGAAAACCTGGAATTATCACCCGCA
AAGATCATTTCTCTGTCACAAAACCTCATTCATTCAGACTGCTGCTCGTC
GTTCAGCGCATATCCGAAAGAATTCTTTGGCATCAAAGACAACTCCTCGC
GCTGCTTTTGATTACGATCTGGCTATTATTGGCGCCGGTGTTGGGGGACA
TGGGGCAGCCCTACATGCTGTTGCGAAGGGACTTAAGGTCTGTATTTTCG
AAGCGCGTGATGTCGGTGGTACGTGCGTCAATAGAGGTTGTGTTCCTTCG
AAAGCTCTCCTAGCAGCCGCTGGTCGCATTCGAGAAATGAAGGACGCTGA
TCATCTGCGCGCTCTGGGCATATCTCTCGATGGAGTTTCTTATGATCGAC
AGGGTGTAGCCAATCATGCAAACGGCCTAGCGTCCAAAGTAAAGGGAAAC
ATGGCAAACTCACTAGGTGCTCTTGGAGTCACGATCATAAATGCAAGAGC
AACACTCACAGGAGCTCAAAGTATAAAAGGATCGGACGGAAAGATTTATA
CAGCACAAAATATCATTCTAGCGCCTGGCAGTGTTCCCTTTGTTCCGAGA
GGTGTTGAAATTGACGGCAAAACAGTCTTTACAAGCGACGATGCGTTGAA
GATGGAATGGGTTCCTGATTGGGTAGCTATTGTTGGATCGGGTTACATTG
GTCTTGAATTTTCCGACGTATACACTGCATTGGGCTCTAACGTGACTTTT
GTTGAGGCCATGCCTAATCTAATGCCTGGCTTTGACCCTGAAATTGCCCG
GTTGGCGCAAAGGCTTCTAATCAATCCTCGGCCAATTGATTTTCACACCA
ACGTTTTCGCGTCGAAAGTTACACCAGGTATCCCCGGAAAACAACCTGTG
ATCATTGATCTGATCGACGCTGGTAGCAAAGAACCTTTGGACCAGCTAGA
AGTGGATGCTGCAATGATTGCCACAGGCCGTGCGCCCTACACTGAAGGCT
TAGGTCTGGAGTCGGTGCAGGTGGAAATCCAGCGAGGTTTTGTTCCTGTA
GACGAACGCATGCGTGTCCTTGACAAGAATGGAGCAGTCATCGACCATTT
ATACGCCATTGGAGATGTCAACGGCAAGATGATGCTTGCACATGCAGCTT
CCGCGCAAGGTATCAGCGCAGTCGAGAACATTGTCGGGAAAGAACACCAA
GTTGACCACAATGCCGTTCCTGCTGCTTGTTTCACGCATCCGGAAATATC
GATGGTGGGGCTAACAGAGCCTGCTGCGAAAGAAAAGGCGTCTTTAGAAG
GTTTTGATTTGGGGAAATCAGTCGGGCACTTCCGAGCAAATTCGAAAGCT
TTAGCAGAGGGAGAAGGAGATGGTATTGCAAAACTGCTTTTCAACAAGAG
TAATGGAAAAATATTAGGCGTCCATATTATTGGACTTCATGCAGCAGACT
TGATACAGGAATGTTCAAACGCTGTAGCTCGCGGTACAACGGTCGACGAA
CTTGCATTTTGTGTACATACCCATCCGACACTCAGCGAGGTTGTTGATGA
AGCCATCAAGGGCGCTGTTGGAATGGCTGCCCACTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:1652457..1654043+

>Gvermi11693.t1 ID=Gvermi11693.t1|Name=Gvermi11693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1587bp|location=Sequence derived from alignment at ScGOVlb_3404:1652457..1654043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTTATCTCCTCAGTTTGCGCGAAAACCTGGAATTATCACCCGCA
AAGATCATTTCTCTGTCACAAAACCTCATTCATTCAGACTGCTGCTCGTC
GTTCAGCGCATATCCGAAAGAATTCTTTGGCATCAAAGACAACTCCTCGC
GCTGCTTTTGATTACGATCTGGCTATTATTGGCGCCGGTGTTGGGGGACA
TGGGGCAGCCCTACATGCTGTTGCGAAGGGACTTAAGGTCTGTATTTTCG
AAGCGCGTGATGTCGGTGGTACGTGCGTCAATAGAGGTTGTGTTCCTTCG
AAAGCTCTCCTAGCAGCCGCTGGTCGCATTCGAGAAATGAAGGACGCTGA
TCATCTGCGCGCTCTGGGCATATCTCTCGATGGAGTTTCTTATGATCGAC
AGGGTGTAGCCAATCATGCAAACGGCCTAGCGTCCAAAGTAAAGGGAAAC
ATGGCAAACTCACTAGGTGCTCTTGGAGTCACGATCATAAATGCAAGAGC
AACACTCACAGGAGCTCAAAGTATAAAAGGATCGGACGGAAAGATTTATA
CAGCACAAAATATCATTCTAGCGCCTGGCAGTGTTCCCTTTGTTCCGAGA
GGTGTTGAAATTGACGGCAAAACAGTCTTTACAAGCGACGATGCGTTGAA
GATGGAATGGGTTCCTGATTGGGTAGCTATTGTTGGATCGGGTTACATTG
GTCTTGAATTTTCCGACGTATACACTGCATTGGGCTCTAACGTGACTTTT
GTTGAGGCCATGCCTAATCTAATGCCTGGCTTTGACCCTGAAATTGCCCG
GTTGGCGCAAAGGCTTCTAATCAATCCTCGGCCAATTGATTTTCACACCA
ACGTTTTCGCGTCGAAAGTTACACCAGGTATCCCCGGAAAACAACCTGTG
ATCATTGATCTGATCGACGCTGGTAGCAAAGAACCTTTGGACCAGCTAGA
AGTGGATGCTGCAATGATTGCCACAGGCCGTGCGCCCTACACTGAAGGCT
TAGGTCTGGAGTCGGTGCAGGTGGAAATCCAGCGAGGTTTTGTTCCTGTA
GACGAACGCATGCGTGTCCTTGACAAGAATGGAGCAGTCATCGACCATTT
ATACGCCATTGGAGATGTCAACGGCAAGATGATGCTTGCACATGCAGCTT
CCGCGCAAGGTATCAGCGCAGTCGAGAACATTGTCGGGAAAGAACACCAA
GTTGACCACAATGCCGTTCCTGCTGCTTGTTTCACGCATCCGGAAATATC
GATGGTGGGGCTAACAGAGCCTGCTGCGAAAGAAAAGGCGTCTTTAGAAG
GTTTTGATTTGGGGAAATCAGTCGGGCACTTCCGAGCAAATTCGAAAGCT
TTAGCAGAGGGAGAAGGAGATGGTATTGCAAAACTGCTTTTCAACAAGAG
TAATGGAAAAATATTAGGCGTCCATATTATTGGACTTCATGCAGCAGACT
TGATACAGGAATGTTCAAACGCTGTAGCTCGCGGTACAACGGTCGACGAA
CTTGCATTTTGTGTACATACCCATCCGACACTCAGCGAGGTTGTTGATGA
AGCCATCAAGGGCGCTGTTGGAATGGCTGCCCACTAA