Gvermi11691.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11691.t1
Unique NameGvermi11691.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1649277..1650146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog349102.Rsph17025_0122
Preferred namesseA
PFAMsRhodanese
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00214
KEGG koko:K01011
KEGG ReactionR01931,R03105,R03106
KEGG Pathwayko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122
Evalue7.02e-75
EggNOG OGsCOG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,1FB0U@1060|Rhodobacter
EC2.8.1.1,2.8.1.2
DescriptionRhodanese Homology Domain
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11691Gvermi11691Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1649277..1650146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11691.t1.start1Gvermi11691.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1649277..1649279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11691.t1.CDS1Gvermi11691.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1649277..1650146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11691.t1.exon1Gvermi11691.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1649277..1650146 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11691.t1.stop1Gvermi11691.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1650144..1650146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11691.t1Gvermi11691.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1649277..1650146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11691.t1 ID=Gvermi11691.t1|Name=Gvermi11691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=290bp
MCSSSRRSALVDPTWLASRLSNVSILDASWYMPGEKRDPYDDFIKKRIPG
ARFFDIDAPGLSDTSSALPHMLPAPSEFAAKVSELGVTNTKPLVIYAQSG
FVGAARAWWMFRLHGKQDSYLLDGGLKEWESQNLPLDTSLPPDDVCINPD
TPFVSHVNADLVRDMHHILGQIRDQEGVIIDARSKSRFEGTSAEPRPGLL
SGHMPGAYNVPSSTIVSSGKLKTTEELRRVFEEAGINVESITKPVSLTCG
SGVTAAILCLALHELGVDAAVYDGSWSEYGAIDSNPVTK*
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spliced messenger RNA

>Gvermi11691.t1 ID=Gvermi11691.t1|Name=Gvermi11691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:1649277..1650146+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTCGTCCTCTCGACGCTCAGCTCTAGTTGATCCTACATGGTTGGC
CTCACGGCTCTCGAATGTAAGCATTCTGGATGCGTCATGGTACATGCCGG
GGGAAAAGCGTGATCCATACGATGATTTTATAAAGAAAAGGATCCCTGGC
GCCCGTTTCTTTGACATAGACGCGCCAGGTCTCAGTGACACCTCTTCTGC
GCTTCCTCATATGTTGCCAGCGCCAAGTGAATTTGCTGCGAAAGTATCTG
AGCTAGGAGTAACTAATACAAAACCACTGGTCATCTACGCCCAATCCGGT
TTTGTTGGTGCCGCGCGTGCATGGTGGATGTTTCGGCTTCACGGAAAACA
AGATTCGTACTTACTTGATGGGGGGTTGAAAGAATGGGAGAGTCAGAATC
TACCTCTCGATACAAGCCTTCCTCCTGACGACGTTTGTATTAATCCAGAT
ACTCCATTTGTCTCACACGTAAACGCTGATCTCGTTCGTGATATGCACCA
TATTCTTGGCCAAATTCGGGACCAAGAAGGGGTGATCATTGATGCCCGAT
CGAAAAGTCGTTTTGAGGGAACAAGTGCAGAGCCACGACCGGGTCTTTTA
AGCGGACACATGCCGGGTGCTTATAATGTACCAAGCTCAACAATAGTCTC
CTCGGGAAAATTGAAAACCACTGAAGAATTACGACGAGTCTTCGAGGAAG
CGGGCATAAATGTGGAGAGCATAACCAAACCGGTTTCTCTCACTTGCGGG
AGTGGAGTTACCGCAGCCATACTCTGCCTTGCGCTTCATGAGCTGGGCGT
AGATGCAGCAGTTTACGACGGCAGTTGGAGCGAATATGGGGCTATTGACA
GCAACCCCGTGACAAAGTGA
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protein sequence of Gvermi11691.t1

>Gvermi11691.t1 ID=Gvermi11691.t1|Name=Gvermi11691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=290bp
MCSSSRRSALVDPTWLASRLSNVSILDASWYMPGEKRDPYDDFIKKRIPG
ARFFDIDAPGLSDTSSALPHMLPAPSEFAAKVSELGVTNTKPLVIYAQSG
FVGAARAWWMFRLHGKQDSYLLDGGLKEWESQNLPLDTSLPPDDVCINPD
TPFVSHVNADLVRDMHHILGQIRDQEGVIIDARSKSRFEGTSAEPRPGLL
SGHMPGAYNVPSSTIVSSGKLKTTEELRRVFEEAGINVESITKPVSLTCG
SGVTAAILCLALHELGVDAAVYDGSWSEYGAIDSNPVTK*
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mRNA from alignment at ScGOVlb_3404:1649277..1650146+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11691.t1 ID=Gvermi11691.t1|Name=Gvermi11691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:1649277..1650146+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTTCGTCCTCTCGACGCTCAGCTCTAGTTGATCCTACATGGTTGGC
CTCACGGCTCTCGAATGTAAGCATTCTGGATGCGTCATGGTACATGCCGG
GGGAAAAGCGTGATCCATACGATGATTTTATAAAGAAAAGGATCCCTGGC
GCCCGTTTCTTTGACATAGACGCGCCAGGTCTCAGTGACACCTCTTCTGC
GCTTCCTCATATGTTGCCAGCGCCAAGTGAATTTGCTGCGAAAGTATCTG
AGCTAGGAGTAACTAATACAAAACCACTGGTCATCTACGCCCAATCCGGT
TTTGTTGGTGCCGCGCGTGCATGGTGGATGTTTCGGCTTCACGGAAAACA
AGATTCGTACTTACTTGATGGGGGGTTGAAAGAATGGGAGAGTCAGAATC
TACCTCTCGATACAAGCCTTCCTCCTGACGACGTTTGTATTAATCCAGAT
ACTCCATTTGTCTCACACGTAAACGCTGATCTCGTTCGTGATATGCACCA
TATTCTTGGCCAAATTCGGGACCAAGAAGGGGTGATCATTGATGCCCGAT
CGAAAAGTCGTTTTGAGGGAACAAGTGCAGAGCCACGACCGGGTCTTTTA
AGCGGACACATGCCGGGTGCTTATAATGTACCAAGCTCAACAATAGTCTC
CTCGGGAAAATTGAAAACCACTGAAGAATTACGACGAGTCTTCGAGGAAG
CGGGCATAAATGTGGAGAGCATAACCAAACCGGTTTCTCTCACTTGCGGG
AGTGGAGTTACCGCAGCCATACTCTGCCTTGCGCTTCATGAGCTGGGCGT
AGATGCAGCAGTTTACGACGGCAGTTGGAGCGAATATGGGGCTATTGACA
GCAACCCCGTGACAAAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1649277..1650146+

>Gvermi11691.t1 ID=Gvermi11691.t1|Name=Gvermi11691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:1649277..1650146+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTTCGTCCTCTCGACGCTCAGCTCTAGTTGATCCTACATGGTTGGC
CTCACGGCTCTCGAATGTAAGCATTCTGGATGCGTCATGGTACATGCCGG
GGGAAAAGCGTGATCCATACGATGATTTTATAAAGAAAAGGATCCCTGGC
GCCCGTTTCTTTGACATAGACGCGCCAGGTCTCAGTGACACCTCTTCTGC
GCTTCCTCATATGTTGCCAGCGCCAAGTGAATTTGCTGCGAAAGTATCTG
AGCTAGGAGTAACTAATACAAAACCACTGGTCATCTACGCCCAATCCGGT
TTTGTTGGTGCCGCGCGTGCATGGTGGATGTTTCGGCTTCACGGAAAACA
AGATTCGTACTTACTTGATGGGGGGTTGAAAGAATGGGAGAGTCAGAATC
TACCTCTCGATACAAGCCTTCCTCCTGACGACGTTTGTATTAATCCAGAT
ACTCCATTTGTCTCACACGTAAACGCTGATCTCGTTCGTGATATGCACCA
TATTCTTGGCCAAATTCGGGACCAAGAAGGGGTGATCATTGATGCCCGAT
CGAAAAGTCGTTTTGAGGGAACAAGTGCAGAGCCACGACCGGGTCTTTTA
AGCGGACACATGCCGGGTGCTTATAATGTACCAAGCTCAACAATAGTCTC
CTCGGGAAAATTGAAAACCACTGAAGAATTACGACGAGTCTTCGAGGAAG
CGGGCATAAATGTGGAGAGCATAACCAAACCGGTTTCTCTCACTTGCGGG
AGTGGAGTTACCGCAGCCATACTCTGCCTTGCGCTTCATGAGCTGGGCGT
AGATGCAGCAGTTTACGACGGCAGTTGGAGCGAATATGGGGCTATTGACA
GCAACCCCGTGACAAAGTGA
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