Gvermi11674.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11674.t1
Unique NameGvermi11674.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1609306..1609842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LN75
Preferred namestp1
PFAMsLMWPc
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01104,ko:K14394
KEGG ReactionR00548,R02135
KEGG Pathwayko00730,ko00740,ko01100,map00730,map00740,map01100
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0004726,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue9.19e-49
EggNOG OGsCOG0394@1|root,KOG3217@2759|Eukaryota
EC3.1.3.2,3.1.3.48
Descriptionnon-membrane spanning protein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11674Gvermi11674Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1609306..1609842 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11674.t1.start1Gvermi11674.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1609306..1609308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11674.t1.CDS1Gvermi11674.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1609306..1609842 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11674.t1.exon1Gvermi11674.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1609306..1609842 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11674.t1.stop1Gvermi11674.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1609840..1609842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11674.t1Gvermi11674.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1609306..1609842 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11674.t1 ID=Gvermi11674.t1|Name=Gvermi11674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=179bp
MSASTQTRGILMLCTGNICRSPAAEAVMKRVLDKRGLSHFFVDSCGTGGG
SSNWYKENGCSYHEGDLADPRMRAAASQRGLNLESRSRPLTRDDFDNFEV
IVAMDKHNLKAIETARRYWKVENPKAKIVLMSNFSPDESFQGKPIPDPYW
SGADGFEYALDLIEAACEGLADDLTASA*
back to top

spliced messenger RNA

>Gvermi11674.t1 ID=Gvermi11674.t1|Name=Gvermi11674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp|location=Sequence derived from alignment at ScGOVlb_3404:1609306..1609842+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTTCAACTCAAACCCGCGGCATTCTCATGCTCTGTACCGGAAA
CATTTGCCGGTCGCCGGCCGCGGAAGCGGTCATGAAGCGTGTGCTGGACA
AACGAGGCCTTTCACACTTCTTTGTAGACTCATGCGGCACCGGCGGTGGT
AGTTCGAATTGGTATAAGGAGAATGGATGCAGTTACCACGAGGGTGACCT
AGCTGACCCACGCATGCGGGCCGCCGCTAGTCAACGCGGCCTCAACTTGG
AGAGTCGCTCGCGCCCATTGACTCGAGACGATTTCGATAACTTTGAGGTT
ATCGTAGCCATGGACAAGCATAATCTCAAGGCTATCGAAACTGCTCGCCG
ATATTGGAAGGTCGAGAATCCGAAAGCAAAAATTGTCCTCATGAGTAACT
TCAGTCCTGATGAAAGCTTTCAAGGGAAGCCCATCCCAGATCCCTACTGG
TCAGGCGCTGATGGGTTTGAGTACGCCTTGGACCTCATCGAGGCCGCATG
CGAGGGCTTAGCTGATGATCTTACAGCTTCTGCCTAA
back to top

protein sequence of Gvermi11674.t1

>Gvermi11674.t1 ID=Gvermi11674.t1|Name=Gvermi11674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=179bp
MSASTQTRGILMLCTGNICRSPAAEAVMKRVLDKRGLSHFFVDSCGTGGG
SSNWYKENGCSYHEGDLADPRMRAAASQRGLNLESRSRPLTRDDFDNFEV
IVAMDKHNLKAIETARRYWKVENPKAKIVLMSNFSPDESFQGKPIPDPYW
SGADGFEYALDLIEAACEGLADDLTASA*
back to top

mRNA from alignment at ScGOVlb_3404:1609306..1609842+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11674.t1 ID=Gvermi11674.t1|Name=Gvermi11674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp|location=Sequence derived from alignment at ScGOVlb_3404:1609306..1609842+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCTTCAACTCAAACCCGCGGCATTCTCATGCTCTGTACCGGAAA
CATTTGCCGGTCGCCGGCCGCGGAAGCGGTCATGAAGCGTGTGCTGGACA
AACGAGGCCTTTCACACTTCTTTGTAGACTCATGCGGCACCGGCGGTGGT
AGTTCGAATTGGTATAAGGAGAATGGATGCAGTTACCACGAGGGTGACCT
AGCTGACCCACGCATGCGGGCCGCCGCTAGTCAACGCGGCCTCAACTTGG
AGAGTCGCTCGCGCCCATTGACTCGAGACGATTTCGATAACTTTGAGGTT
ATCGTAGCCATGGACAAGCATAATCTCAAGGCTATCGAAACTGCTCGCCG
ATATTGGAAGGTCGAGAATCCGAAAGCAAAAATTGTCCTCATGAGTAACT
TCAGTCCTGATGAAAGCTTTCAAGGGAAGCCCATCCCAGATCCCTACTGG
TCAGGCGCTGATGGGTTTGAGTACGCCTTGGACCTCATCGAGGCCGCATG
CGAGGGCTTAGCTGATGATCTTACAGCTTCTGCCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:1609306..1609842+

>Gvermi11674.t1 ID=Gvermi11674.t1|Name=Gvermi11674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=537bp|location=Sequence derived from alignment at ScGOVlb_3404:1609306..1609842+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCTTCAACTCAAACCCGCGGCATTCTCATGCTCTGTACCGGAAA
CATTTGCCGGTCGCCGGCCGCGGAAGCGGTCATGAAGCGTGTGCTGGACA
AACGAGGCCTTTCACACTTCTTTGTAGACTCATGCGGCACCGGCGGTGGT
AGTTCGAATTGGTATAAGGAGAATGGATGCAGTTACCACGAGGGTGACCT
AGCTGACCCACGCATGCGGGCCGCCGCTAGTCAACGCGGCCTCAACTTGG
AGAGTCGCTCGCGCCCATTGACTCGAGACGATTTCGATAACTTTGAGGTT
ATCGTAGCCATGGACAAGCATAATCTCAAGGCTATCGAAACTGCTCGCCG
ATATTGGAAGGTCGAGAATCCGAAAGCAAAAATTGTCCTCATGAGTAACT
TCAGTCCTGATGAAAGCTTTCAAGGGAAGCCCATCCCAGATCCCTACTGG
TCAGGCGCTGATGGGTTTGAGTACGCCTTGGACCTCATCGAGGCCGCATG
CGAGGGCTTAGCTGATGATCTTACAGCTTCTGCCTAA
back to top