Gvermi11661.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11661.t1
Unique NameGvermi11661.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1578582..1579254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005845597.1
PFAMsUPF0047
Max annot lvl3041|Chlorophyta
Evalue6.32e-58
EggNOG OGsCOG0432@1|root,KOG3267@2759|Eukaryota,383ZV@33090|Viridiplantae,34KG0@3041|Chlorophyta
DescriptionUncharacterised protein family UPF0047
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11661Gvermi11661Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1578582..1579254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11661.t1Gvermi11661.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1578582..1579254 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11661.t1.stop1Gvermi11661.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1578582..1578584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11661.t1.CDS1Gvermi11661.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1578582..1578873 -
Gvermi11661.t1.CDS2Gvermi11661.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1578979..1578983 -
Gvermi11661.t1.CDS3Gvermi11661.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1579093..1579254 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11661.t1.exon1Gvermi11661.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1578582..1578873 -
Gvermi11661.t1.exon2Gvermi11661.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1578979..1578983 -
Gvermi11661.t1.exon3Gvermi11661.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1579093..1579254 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11661.t1.intron1Gvermi11661.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1578874..1578978 -
Gvermi11661.t1.intron2Gvermi11661.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1578984..1579092 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11661.t1.start1Gvermi11661.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1579252..1579254 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11661.t1 ID=Gvermi11661.t1|Name=Gvermi11661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MATSTNIWLQKEISLKQRKRGCHLVTSEIVAAVKDELQQIKVGIFHLFIK
HTSASLTISENADPDVQIDMETHLNRIVPDVGDPGCPMIRHTEEGPDDMA
SHVKSALTSTSLSIPISNGRLAFGTWQGIWLLEHRFYGGPRRLVVTINGS
KA*
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spliced messenger RNA

>Gvermi11661.t1 ID=Gvermi11661.t1|Name=Gvermi11661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_3404:1578582..1579254- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCTCTACGAACATTTGGCTGCAAAAGGAAATTAGTTTAAAGCA
ACGAAAACGTGGCTGCCATCTCGTTACCTCCGAAATTGTGGCAGCCGTAA
AGGACGAACTGCAGCAGATCAAGGTGGGAATTTTCCACCTCTTTATCAAG
CATACCTCAGCAAGTCTGACCATTAGCGAAAACGCCGATCCGGATGTTCA
GATAGACATGGAAACTCACTTGAATAGAATTGTGCCCGATGTCGGAGATC
CCGGTTGCCCTATGATTCGACACACTGAGGAAGGCCCAGATGACATGGCG
AGTCATGTCAAGAGCGCTCTGACAAGTACTTCATTGTCTATTCCGATATC
TAACGGACGGCTTGCGTTCGGAACATGGCAAGGCATCTGGTTGCTCGAAC
ATCGCTTTTACGGAGGTCCTAGACGACTCGTGGTGACGATAAACGGATCC
AAGGCATAG
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protein sequence of Gvermi11661.t1

>Gvermi11661.t1 ID=Gvermi11661.t1|Name=Gvermi11661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MATSTNIWLQKEISLKQRKRGCHLVTSEIVAAVKDELQQIKVGIFHLFIK
HTSASLTISENADPDVQIDMETHLNRIVPDVGDPGCPMIRHTEEGPDDMA
SHVKSALTSTSLSIPISNGRLAFGTWQGIWLLEHRFYGGPRRLVVTINGS
KA*
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mRNA from alignment at ScGOVlb_3404:1578582..1579254-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11661.t1 ID=Gvermi11661.t1|Name=Gvermi11661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=673bp|location=Sequence derived from alignment at ScGOVlb_3404:1578582..1579254- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTACCTCTACGAACATTTGGCTGCAAAAGGAAATTAGTTTAAAGCA
ACGAAAACGTGGCTGCCATCTCGTTACCTCCGAAATTGTGGCAGCCGTAA
AGGACGAACTGCAGCAGATCAAGGTGGGAATTTTCCACCTCTTTATCAAG
CATACCTCAGCAGTAAGCCATTTCTTCAATGCTTTTTGTCTTCGTATGCA
CGCTGAGAGTAGCTCACTAACTAGGGCGAAATTCTGCCTCCTACTTCCAT
CCATTTTCTTGCGATGGACAGAGTCTGTATGTTGGGCTTCTTTCATTCTA
CACCACATAACTGCCGGTGAACCTTAGACGTACATAGGAAATATCTGACA
GTCGTTCTTGATTGTTTCTGTTTTTACACAGGACCATTAGCGAAAACGCC
GATCCGGATGTTCAGATAGACATGGAAACTCACTTGAATAGAATTGTGCC
CGATGTCGGAGATCCCGGTTGCCCTATGATTCGACACACTGAGGAAGGCC
CAGATGACATGGCGAGTCATGTCAAGAGCGCTCTGACAAGTACTTCATTG
TCTATTCCGATATCTAACGGACGGCTTGCGTTCGGAACATGGCAAGGCAT
CTGGTTGCTCGAACATCGCTTTTACGGAGGTCCTAGACGACTCGTGGTGA
CGATAAACGGATCCAAGGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1578582..1579254-

>Gvermi11661.t1 ID=Gvermi11661.t1|Name=Gvermi11661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_3404:1578582..1579254- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTACCTCTACGAACATTTGGCTGCAAAAGGAAATTAGTTTAAAGCA
ACGAAAACGTGGCTGCCATCTCGTTACCTCCGAAATTGTGGCAGCCGTAA
AGGACGAACTGCAGCAGATCAAGGTGGGAATTTTCCACCTCTTTATCAAG
CATACCTCAGCAAGTCTGACCATTAGCGAAAACGCCGATCCGGATGTTCA
GATAGACATGGAAACTCACTTGAATAGAATTGTGCCCGATGTCGGAGATC
CCGGTTGCCCTATGATTCGACACACTGAGGAAGGCCCAGATGACATGGCG
AGTCATGTCAAGAGCGCTCTGACAAGTACTTCATTGTCTATTCCGATATC
TAACGGACGGCTTGCGTTCGGAACATGGCAAGGCATCTGGTTGCTCGAAC
ATCGCTTTTACGGAGGTCCTAGACGACTCGTGGTGACGATAAACGGATCC
AAGGCATAG
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