Gvermi11656.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11656.t1
Unique NameGvermi11656.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1570935..1571658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706078.1
PFAMsAICARFT_IMPCHas,AIRS,AIRS_C,Formyl_trans_N,GARS_A,GARS_C,GARS_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00090,RC00166,RC00197,RC01100,RC01128
KEGG koko:K00601,ko:K11787,ko:K11788
KEGG ReactionR04144,R04208,R04325,R04326
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523
KEGG ModuleM00048
Evalue5.45e-68
EggNOG OGsCOG0299@1|root,KOG3076@2759|Eukaryota
EC2.1.2.2,6.3.3.1,6.3.4.13
Descriptionphosphoribosylglycinamide formyltransferase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11656Gvermi11656Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1570935..1571658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11656.t1Gvermi11656.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1570935..1571658 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11656.t1.start1Gvermi11656.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1570935..1570937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11656.t1.CDS1Gvermi11656.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1570935..1571306 +
Gvermi11656.t1.CDS2Gvermi11656.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1571392..1571658 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11656.t1.exon1Gvermi11656.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1570935..1571306 +
Gvermi11656.t1.exon2Gvermi11656.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1571392..1571658 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11656.t1.intron1Gvermi11656.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1571307..1571391 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11656.t1.stop1Gvermi11656.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1571656..1571658 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11656.t1 ID=Gvermi11656.t1|Name=Gvermi11656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=213bp
MVSGGGRSLQNVCEQISTGQIKGCQVSLVVASKPSVGAIARARHFHIPVR
VVRQKDHDGSVEHFSDAISELFDEFEIDLVVMAGWMHFYRIPPRYEGKVI
NIHPSLIPSFCGKGYYGDRVHAAVIKFGVKISGCTVHMADNQYDHGPIIV
QKAVPVYDTDSKDEIAGRVFEKEKEALPEAIQLFVDGRLSIENGIVRIAD
IRTQSDARGSIV*
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spliced messenger RNA

>Gvermi11656.t1 ID=Gvermi11656.t1|Name=Gvermi11656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=639bp|location=Sequence derived from alignment at ScGOVlb_3404:1570935..1571658+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCGGGTGGTGGGCGTTCCTTACAAAATGTGTGTGAGCAGATTAG
CACGGGTCAGATCAAAGGCTGTCAAGTAAGCCTTGTTGTCGCTAGTAAAC
CGTCTGTGGGTGCTATTGCTCGTGCTCGGCATTTTCATATTCCAGTTCGA
GTTGTGCGACAAAAAGATCATGACGGAAGCGTAGAACACTTCAGTGACGC
AATATCAGAATTATTCGATGAGTTTGAGATAGATCTTGTAGTAATGGCCG
GTTGGATGCATTTCTACCGAATCCCGCCTCGATATGAAGGGAAAGTTATT
AACATTCATCCAAGCCTTATTCCTTCCTTCTGTGGAAAAGGATATTATGG
GGATAGGGTTCATGCTGCGGTTATAAAATTCGGAGTGAAGATCTCCGGCT
GCACGGTCCATATGGCAGATAACCAATACGATCACGGACCCATCATTGTG
CAAAAAGCGGTACCGGTGTACGATACAGATTCAAAAGATGAGATTGCAGG
GCGAGTTTTTGAAAAAGAAAAAGAAGCTTTACCTGAAGCAATTCAGTTGT
TTGTCGATGGTAGGCTATCCATTGAGAATGGCATTGTTCGAATAGCTGAC
ATCAGAACGCAGTCCGATGCGAGAGGTTCTATTGTTTGA
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protein sequence of Gvermi11656.t1

>Gvermi11656.t1 ID=Gvermi11656.t1|Name=Gvermi11656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=213bp
MVSGGGRSLQNVCEQISTGQIKGCQVSLVVASKPSVGAIARARHFHIPVR
VVRQKDHDGSVEHFSDAISELFDEFEIDLVVMAGWMHFYRIPPRYEGKVI
NIHPSLIPSFCGKGYYGDRVHAAVIKFGVKISGCTVHMADNQYDHGPIIV
QKAVPVYDTDSKDEIAGRVFEKEKEALPEAIQLFVDGRLSIENGIVRIAD
IRTQSDARGSIV*
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mRNA from alignment at ScGOVlb_3404:1570935..1571658+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11656.t1 ID=Gvermi11656.t1|Name=Gvermi11656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=724bp|location=Sequence derived from alignment at ScGOVlb_3404:1570935..1571658+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCGGGTGGTGGGCGTTCCTTACAAAATGTGTGTGAGCAGATTAG
CACGGGTCAGATCAAAGGCTGTCAAGTAAGCCTTGTTGTCGCTAGTAAAC
CGTCTGTGGGTGCTATTGCTCGTGCTCGGCATTTTCATATTCCAGTTCGA
GTTGTGCGACAAAAAGATCATGACGGAAGCGTAGAACACTTCAGTGACGC
AATATCAGAATTATTCGATGAGTTTGAGATAGATCTTGTAGTAATGGCCG
GTTGGATGCATTTCTACCGAATCCCGCCTCGATATGAAGGGAAAGTTATT
AACATTCATCCAAGCCTTATTCCTTCCTTCTGTGGAAAAGGATATTATGG
GGATAGGGTTCATGCTGCGGTTGTAAGTCACCCTGACCACTTCTTTCCAA
CGCCCCAAGTCTCAAAGATAAAGCCTGACAATTCTCAACTTTCCTAATCG
ACGGCAGATAAAATTCGGAGTGAAGATCTCCGGCTGCACGGTCCATATGG
CAGATAACCAATACGATCACGGACCCATCATTGTGCAAAAAGCGGTACCG
GTGTACGATACAGATTCAAAAGATGAGATTGCAGGGCGAGTTTTTGAAAA
AGAAAAAGAAGCTTTACCTGAAGCAATTCAGTTGTTTGTCGATGGTAGGC
TATCCATTGAGAATGGCATTGTTCGAATAGCTGACATCAGAACGCAGTCC
GATGCGAGAGGTTCTATTGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1570935..1571658+

>Gvermi11656.t1 ID=Gvermi11656.t1|Name=Gvermi11656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=639bp|location=Sequence derived from alignment at ScGOVlb_3404:1570935..1571658+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCGGGTGGTGGGCGTTCCTTACAAAATGTGTGTGAGCAGATTAG
CACGGGTCAGATCAAAGGCTGTCAAGTAAGCCTTGTTGTCGCTAGTAAAC
CGTCTGTGGGTGCTATTGCTCGTGCTCGGCATTTTCATATTCCAGTTCGA
GTTGTGCGACAAAAAGATCATGACGGAAGCGTAGAACACTTCAGTGACGC
AATATCAGAATTATTCGATGAGTTTGAGATAGATCTTGTAGTAATGGCCG
GTTGGATGCATTTCTACCGAATCCCGCCTCGATATGAAGGGAAAGTTATT
AACATTCATCCAAGCCTTATTCCTTCCTTCTGTGGAAAAGGATATTATGG
GGATAGGGTTCATGCTGCGGTTATAAAATTCGGAGTGAAGATCTCCGGCT
GCACGGTCCATATGGCAGATAACCAATACGATCACGGACCCATCATTGTG
CAAAAAGCGGTACCGGTGTACGATACAGATTCAAAAGATGAGATTGCAGG
GCGAGTTTTTGAAAAAGAAAAAGAAGCTTTACCTGAAGCAATTCAGTTGT
TTGTCGATGGTAGGCTATCCATTGAGAATGGCATTGTTCGAATAGCTGAC
ATCAGAACGCAGTCCGATGCGAGAGGTTCTATTGTTTGA
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