Gvermi11651.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11651.t1
Unique NameGvermi11651.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1551667..1552668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36630.CADNFIAP00003592
Max annot lvl4751|Fungi
Evalue3.35e-07
EggNOG OGs2EPC6@1|root,2SSJJ@2759|Eukaryota,3AQRJ@33154|Opisthokonta,3PFC8@4751|Fungi,3QZR4@4890|Ascomycota,20P79@147545|Eurotiomycetes,3SA16@5042|Eurotiales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11651Gvermi11651Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1551667..1552668 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11651.t1.stop1Gvermi11651.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1551667..1551669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11651.t1.CDS1Gvermi11651.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1551667..1552668 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11651.t1.exon1Gvermi11651.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1551667..1552668 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11651.t1.start1Gvermi11651.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1552666..1552668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11651.t1Gvermi11651.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1551667..1552668 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11651.t1 ID=Gvermi11651.t1|Name=Gvermi11651.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=334bp
MHAEQATAHPATLAEKYRTTATDAGVRWAERPGQNIFIPGESARTSEISA
LCGQVCDVIRAGLSVAVAAGDQVDTAKVINAKEAAMATFTFQERAMFRDW
ENGMEMGTWDFAANVATNPISETKQKHFKRLAAALCVLYKTSGITPEQAK
GWTVGNQPLMAICWAQCKIMKAQRDAAGEQDGVDPKELLEKRVLNRIQGL
IGRRRNAWGIAWRRLNASMSEAERCIQLRMNQLDNSGKGKARKALPAHHA
VRQTYPSMRVPRVKNLAELAKGKRIVREVDMAPPALPASQPGGATPVAES
TAPRPRKRPCTEEPYTVAAPGEDENAEGDELFD*
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spliced messenger RNA

>Gvermi11651.t1 ID=Gvermi11651.t1|Name=Gvermi11651.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_3404:1551667..1552668- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCAGAGCAGGCCACCGCGCATCCAGCGACCTTGGCCGAAAAGTA
TAGGACTACCGCGACCGATGCGGGCGTTCGTTGGGCCGAGAGGCCCGGTC
AAAATATATTCATACCAGGCGAATCTGCCAGGACGAGTGAGATCTCCGCA
CTCTGTGGCCAGGTTTGCGATGTTATTCGAGCTGGTCTGTCAGTGGCAGT
AGCTGCTGGCGACCAGGTTGATACGGCCAAGGTCATTAACGCAAAGGAGG
CGGCTATGGCCACCTTTACGTTTCAGGAGAGGGCCATGTTTCGCGACTGG
GAGAACGGTATGGAGATGGGGACGTGGGACTTCGCCGCGAACGTTGCTAC
GAACCCCATCAGCGAGACGAAACAGAAGCATTTCAAGAGGCTTGCGGCCG
CCCTTTGCGTCTTATACAAGACCTCTGGTATCACACCGGAGCAGGCAAAG
GGATGGACGGTCGGTAACCAGCCCCTTATGGCGATCTGCTGGGCCCAGTG
CAAAATCATGAAGGCGCAGCGCGATGCTGCTGGGGAACAGGATGGCGTGG
ACCCAAAGGAGTTGCTGGAGAAGAGGGTCCTCAACCGTATCCAAGGGTTG
ATTGGCCGACGTCGCAACGCCTGGGGCATCGCGTGGCGGAGGCTAAACGC
CAGTATGAGCGAAGCTGAGCGCTGCATTCAGCTTCGCATGAACCAGTTAG
ATAATTCTGGTAAGGGGAAGGCACGAAAGGCGCTTCCCGCGCACCATGCA
GTGCGCCAGACTTATCCAAGCATGCGAGTTCCGAGGGTGAAGAACCTGGC
GGAGCTCGCTAAGGGCAAGCGCATTGTGCGCGAGGTGGACATGGCGCCGC
CGGCCCTCCCGGCCTCACAGCCGGGTGGGGCGACGCCGGTCGCTGAGTCG
ACGGCACCGCGCCCGCGCAAGCGCCCGTGCACTGAGGAGCCGTACACCGT
GGCGGCCCCCGGTGAGGATGAGAACGCCGAGGGCGACGAGCTCTTCGATT
AG
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protein sequence of Gvermi11651.t1

>Gvermi11651.t1 ID=Gvermi11651.t1|Name=Gvermi11651.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MHAEQATAHPATLAEKYRTTATDAGVRWAERPGQNIFIPGESARTSEISA
LCGQVCDVIRAGLSVAVAAGDQVDTAKVINAKEAAMATFTFQERAMFRDW
ENGMEMGTWDFAANVATNPISETKQKHFKRLAAALCVLYKTSGITPEQAK
GWTVGNQPLMAICWAQCKIMKAQRDAAGEQDGVDPKELLEKRVLNRIQGL
IGRRRNAWGIAWRRLNASMSEAERCIQLRMNQLDNSGKGKARKALPAHHA
VRQTYPSMRVPRVKNLAELAKGKRIVREVDMAPPALPASQPGGATPVAES
TAPRPRKRPCTEEPYTVAAPGEDENAEGDELFD*
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mRNA from alignment at ScGOVlb_3404:1551667..1552668-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11651.t1 ID=Gvermi11651.t1|Name=Gvermi11651.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_3404:1551667..1552668- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACGCAGAGCAGGCCACCGCGCATCCAGCGACCTTGGCCGAAAAGTA
TAGGACTACCGCGACCGATGCGGGCGTTCGTTGGGCCGAGAGGCCCGGTC
AAAATATATTCATACCAGGCGAATCTGCCAGGACGAGTGAGATCTCCGCA
CTCTGTGGCCAGGTTTGCGATGTTATTCGAGCTGGTCTGTCAGTGGCAGT
AGCTGCTGGCGACCAGGTTGATACGGCCAAGGTCATTAACGCAAAGGAGG
CGGCTATGGCCACCTTTACGTTTCAGGAGAGGGCCATGTTTCGCGACTGG
GAGAACGGTATGGAGATGGGGACGTGGGACTTCGCCGCGAACGTTGCTAC
GAACCCCATCAGCGAGACGAAACAGAAGCATTTCAAGAGGCTTGCGGCCG
CCCTTTGCGTCTTATACAAGACCTCTGGTATCACACCGGAGCAGGCAAAG
GGATGGACGGTCGGTAACCAGCCCCTTATGGCGATCTGCTGGGCCCAGTG
CAAAATCATGAAGGCGCAGCGCGATGCTGCTGGGGAACAGGATGGCGTGG
ACCCAAAGGAGTTGCTGGAGAAGAGGGTCCTCAACCGTATCCAAGGGTTG
ATTGGCCGACGTCGCAACGCCTGGGGCATCGCGTGGCGGAGGCTAAACGC
CAGTATGAGCGAAGCTGAGCGCTGCATTCAGCTTCGCATGAACCAGTTAG
ATAATTCTGGTAAGGGGAAGGCACGAAAGGCGCTTCCCGCGCACCATGCA
GTGCGCCAGACTTATCCAAGCATGCGAGTTCCGAGGGTGAAGAACCTGGC
GGAGCTCGCTAAGGGCAAGCGCATTGTGCGCGAGGTGGACATGGCGCCGC
CGGCCCTCCCGGCCTCACAGCCGGGTGGGGCGACGCCGGTCGCTGAGTCG
ACGGCACCGCGCCCGCGCAAGCGCCCGTGCACTGAGGAGCCGTACACCGT
GGCGGCCCCCGGTGAGGATGAGAACGCCGAGGGCGACGAGCTCTTCGATT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1551667..1552668-

>Gvermi11651.t1 ID=Gvermi11651.t1|Name=Gvermi11651.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1002bp|location=Sequence derived from alignment at ScGOVlb_3404:1551667..1552668- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACGCAGAGCAGGCCACCGCGCATCCAGCGACCTTGGCCGAAAAGTA
TAGGACTACCGCGACCGATGCGGGCGTTCGTTGGGCCGAGAGGCCCGGTC
AAAATATATTCATACCAGGCGAATCTGCCAGGACGAGTGAGATCTCCGCA
CTCTGTGGCCAGGTTTGCGATGTTATTCGAGCTGGTCTGTCAGTGGCAGT
AGCTGCTGGCGACCAGGTTGATACGGCCAAGGTCATTAACGCAAAGGAGG
CGGCTATGGCCACCTTTACGTTTCAGGAGAGGGCCATGTTTCGCGACTGG
GAGAACGGTATGGAGATGGGGACGTGGGACTTCGCCGCGAACGTTGCTAC
GAACCCCATCAGCGAGACGAAACAGAAGCATTTCAAGAGGCTTGCGGCCG
CCCTTTGCGTCTTATACAAGACCTCTGGTATCACACCGGAGCAGGCAAAG
GGATGGACGGTCGGTAACCAGCCCCTTATGGCGATCTGCTGGGCCCAGTG
CAAAATCATGAAGGCGCAGCGCGATGCTGCTGGGGAACAGGATGGCGTGG
ACCCAAAGGAGTTGCTGGAGAAGAGGGTCCTCAACCGTATCCAAGGGTTG
ATTGGCCGACGTCGCAACGCCTGGGGCATCGCGTGGCGGAGGCTAAACGC
CAGTATGAGCGAAGCTGAGCGCTGCATTCAGCTTCGCATGAACCAGTTAG
ATAATTCTGGTAAGGGGAAGGCACGAAAGGCGCTTCCCGCGCACCATGCA
GTGCGCCAGACTTATCCAAGCATGCGAGTTCCGAGGGTGAAGAACCTGGC
GGAGCTCGCTAAGGGCAAGCGCATTGTGCGCGAGGTGGACATGGCGCCGC
CGGCCCTCCCGGCCTCACAGCCGGGTGGGGCGACGCCGGTCGCTGAGTCG
ACGGCACCGCGCCCGCGCAAGCGCCCGTGCACTGAGGAGCCGTACACCGT
GGCGGCCCCCGGTGAGGATGAGAACGCCGAGGGCGACGAGCTCTTCGATT
AG
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