Gvermi11650.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11650.t1
Unique NameGvermi11650.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1511530..1512777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004993625.1
PFAMsOctopine_DH
Max annot lvl33154|Opisthokonta
Evalue5.77e-58
EggNOG OGs2948S@1|root,2RB5S@2759|Eukaryota,3A0B5@33154|Opisthokonta
DescriptionNAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11650Gvermi11650Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1511530..1512777 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11650.t1.stop1Gvermi11650.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1511530..1511532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11650.t1.CDS1Gvermi11650.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1511530..1512777 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11650.t1.exon1Gvermi11650.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1511530..1512777 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11650.t1.start1Gvermi11650.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1512775..1512777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11650.t1Gvermi11650.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1511530..1512777 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11650.t1 ID=Gvermi11650.t1|Name=Gvermi11650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=416bp
MWKAHQIKQICVVGGGNAAQVLGALLADARRHGSTVRVALLAPFANESER
LSAAASKNGGITLENPDGSTTTGMPDIITNDPELALKNTQIVLLPLPTFA
MPPMLRLIAPHLEKGTWVGALPAQGGFQWIAADILDTSEQGKNIKVFGLD
KLPYNCRTKEYGKLIKVFGYKEDLALSSVPNKLGLAKTMAATISEVVPKL
NLYTVSNFLVLTLATSNQCIHPARMYGMFSKNTVIDRIPLFYEEMDDFSA
NLIHQVSEEMLAIARAVEAKSKQLGQPMDLSAVLSIADSTLKVYDVSDKS
SLKRIFQTCAGFEGISTPLKKGEIKDGVQMYEVDWKCRYFTEDVPALCVL
RGLAQLLGVKTDTMDMLIKWAQKNMDGGYEFITADGKLNTDRKKLMYTPQ
YWGITDADALVRFHA*
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spliced messenger RNA

>Gvermi11650.t1 ID=Gvermi11650.t1|Name=Gvermi11650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at ScGOVlb_3404:1511530..1512777- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAAGGCGCACCAAATCAAGCAGATCTGCGTCGTCGGCGGCGGCAA
CGCCGCGCAGGTGCTCGGCGCGCTGCTCGCCGACGCGCGCCGCCACGGCT
CCACCGTGCGCGTGGCGCTGCTGGCGCCCTTCGCCAACGAGAGCGAGCGC
CTCAGCGCCGCCGCCTCCAAGAACGGCGGCATCACGCTGGAGAACCCCGA
CGGCTCCACCACCACCGGCATGCCCGACATCATCACCAATGACCCAGAGC
TGGCGCTCAAGAACACCCAGATCGTGCTGCTGCCGTTGCCCACCTTTGCC
ATGCCGCCCATGCTGCGCCTCATCGCGCCGCACCTGGAGAAGGGCACCTG
GGTGGGCGCACTGCCCGCGCAGGGCGGCTTCCAGTGGATCGCCGCCGATA
TCCTCGACACCAGTGAGCAAGGAAAAAACATCAAGGTGTTCGGGCTGGAC
AAGTTGCCATATAACTGCCGCACCAAGGAGTACGGCAAGCTCATTAAGGT
GTTTGGCTACAAGGAGGACCTCGCGCTGTCGAGCGTCCCCAACAAGCTGG
GATTGGCTAAAACCATGGCCGCCACCATCTCGGAGGTGGTGCCAAAGCTC
AACTTGTACACCGTGTCCAACTTTTTGGTGCTAACGCTGGCCACCAGCAA
TCAGTGCATCCACCCGGCCAGGATGTACGGCATGTTCTCCAAAAACACCG
TCATTGATCGCATCCCGCTGTTCTACGAGGAAATGGATGACTTCTCGGCC
AATCTCATTCACCAGGTATCGGAGGAGATGCTGGCGATTGCACGCGCCGT
TGAAGCCAAATCAAAACAGTTGGGGCAGCCTATGGACTTGTCCGCGGTGC
TCTCCATCGCCGATTCCACGTTGAAGGTGTACGACGTGAGCGATAAATCA
TCGCTGAAGCGCATCTTCCAGACGTGCGCCGGCTTCGAGGGCATTAGCAC
GCCGCTTAAGAAGGGCGAGATCAAGGACGGTGTGCAAATGTACGAGGTGG
ACTGGAAATGTCGTTACTTTACCGAGGACGTGCCCGCGCTGTGCGTGCTG
CGCGGGCTGGCACAGCTGCTGGGCGTAAAGACGGACACTATGGACATGCT
GATCAAGTGGGCGCAGAAGAACATGGACGGCGGCTATGAGTTCATCACCG
CCGATGGCAAGCTCAACACAGACCGCAAGAAGCTCATGTACACGCCGCAG
TACTGGGGCATTACAGATGCGGACGCGCTGGTGCGCTTCCATGCGTAA
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protein sequence of Gvermi11650.t1

>Gvermi11650.t1 ID=Gvermi11650.t1|Name=Gvermi11650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=416bp
MWKAHQIKQICVVGGGNAAQVLGALLADARRHGSTVRVALLAPFANESER
LSAAASKNGGITLENPDGSTTTGMPDIITNDPELALKNTQIVLLPLPTFA
MPPMLRLIAPHLEKGTWVGALPAQGGFQWIAADILDTSEQGKNIKVFGLD
KLPYNCRTKEYGKLIKVFGYKEDLALSSVPNKLGLAKTMAATISEVVPKL
NLYTVSNFLVLTLATSNQCIHPARMYGMFSKNTVIDRIPLFYEEMDDFSA
NLIHQVSEEMLAIARAVEAKSKQLGQPMDLSAVLSIADSTLKVYDVSDKS
SLKRIFQTCAGFEGISTPLKKGEIKDGVQMYEVDWKCRYFTEDVPALCVL
RGLAQLLGVKTDTMDMLIKWAQKNMDGGYEFITADGKLNTDRKKLMYTPQ
YWGITDADALVRFHA*
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mRNA from alignment at ScGOVlb_3404:1511530..1512777-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11650.t1 ID=Gvermi11650.t1|Name=Gvermi11650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at ScGOVlb_3404:1511530..1512777- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGAAGGCGCACCAAATCAAGCAGATCTGCGTCGTCGGCGGCGGCAA
CGCCGCGCAGGTGCTCGGCGCGCTGCTCGCCGACGCGCGCCGCCACGGCT
CCACCGTGCGCGTGGCGCTGCTGGCGCCCTTCGCCAACGAGAGCGAGCGC
CTCAGCGCCGCCGCCTCCAAGAACGGCGGCATCACGCTGGAGAACCCCGA
CGGCTCCACCACCACCGGCATGCCCGACATCATCACCAATGACCCAGAGC
TGGCGCTCAAGAACACCCAGATCGTGCTGCTGCCGTTGCCCACCTTTGCC
ATGCCGCCCATGCTGCGCCTCATCGCGCCGCACCTGGAGAAGGGCACCTG
GGTGGGCGCACTGCCCGCGCAGGGCGGCTTCCAGTGGATCGCCGCCGATA
TCCTCGACACCAGTGAGCAAGGAAAAAACATCAAGGTGTTCGGGCTGGAC
AAGTTGCCATATAACTGCCGCACCAAGGAGTACGGCAAGCTCATTAAGGT
GTTTGGCTACAAGGAGGACCTCGCGCTGTCGAGCGTCCCCAACAAGCTGG
GATTGGCTAAAACCATGGCCGCCACCATCTCGGAGGTGGTGCCAAAGCTC
AACTTGTACACCGTGTCCAACTTTTTGGTGCTAACGCTGGCCACCAGCAA
TCAGTGCATCCACCCGGCCAGGATGTACGGCATGTTCTCCAAAAACACCG
TCATTGATCGCATCCCGCTGTTCTACGAGGAAATGGATGACTTCTCGGCC
AATCTCATTCACCAGGTATCGGAGGAGATGCTGGCGATTGCACGCGCCGT
TGAAGCCAAATCAAAACAGTTGGGGCAGCCTATGGACTTGTCCGCGGTGC
TCTCCATCGCCGATTCCACGTTGAAGGTGTACGACGTGAGCGATAAATCA
TCGCTGAAGCGCATCTTCCAGACGTGCGCCGGCTTCGAGGGCATTAGCAC
GCCGCTTAAGAAGGGCGAGATCAAGGACGGTGTGCAAATGTACGAGGTGG
ACTGGAAATGTCGTTACTTTACCGAGGACGTGCCCGCGCTGTGCGTGCTG
CGCGGGCTGGCACAGCTGCTGGGCGTAAAGACGGACACTATGGACATGCT
GATCAAGTGGGCGCAGAAGAACATGGACGGCGGCTATGAGTTCATCACCG
CCGATGGCAAGCTCAACACAGACCGCAAGAAGCTCATGTACACGCCGCAG
TACTGGGGCATTACAGATGCGGACGCGCTGGTGCGCTTCCATGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1511530..1512777-

>Gvermi11650.t1 ID=Gvermi11650.t1|Name=Gvermi11650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1248bp|location=Sequence derived from alignment at ScGOVlb_3404:1511530..1512777- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGAAGGCGCACCAAATCAAGCAGATCTGCGTCGTCGGCGGCGGCAA
CGCCGCGCAGGTGCTCGGCGCGCTGCTCGCCGACGCGCGCCGCCACGGCT
CCACCGTGCGCGTGGCGCTGCTGGCGCCCTTCGCCAACGAGAGCGAGCGC
CTCAGCGCCGCCGCCTCCAAGAACGGCGGCATCACGCTGGAGAACCCCGA
CGGCTCCACCACCACCGGCATGCCCGACATCATCACCAATGACCCAGAGC
TGGCGCTCAAGAACACCCAGATCGTGCTGCTGCCGTTGCCCACCTTTGCC
ATGCCGCCCATGCTGCGCCTCATCGCGCCGCACCTGGAGAAGGGCACCTG
GGTGGGCGCACTGCCCGCGCAGGGCGGCTTCCAGTGGATCGCCGCCGATA
TCCTCGACACCAGTGAGCAAGGAAAAAACATCAAGGTGTTCGGGCTGGAC
AAGTTGCCATATAACTGCCGCACCAAGGAGTACGGCAAGCTCATTAAGGT
GTTTGGCTACAAGGAGGACCTCGCGCTGTCGAGCGTCCCCAACAAGCTGG
GATTGGCTAAAACCATGGCCGCCACCATCTCGGAGGTGGTGCCAAAGCTC
AACTTGTACACCGTGTCCAACTTTTTGGTGCTAACGCTGGCCACCAGCAA
TCAGTGCATCCACCCGGCCAGGATGTACGGCATGTTCTCCAAAAACACCG
TCATTGATCGCATCCCGCTGTTCTACGAGGAAATGGATGACTTCTCGGCC
AATCTCATTCACCAGGTATCGGAGGAGATGCTGGCGATTGCACGCGCCGT
TGAAGCCAAATCAAAACAGTTGGGGCAGCCTATGGACTTGTCCGCGGTGC
TCTCCATCGCCGATTCCACGTTGAAGGTGTACGACGTGAGCGATAAATCA
TCGCTGAAGCGCATCTTCCAGACGTGCGCCGGCTTCGAGGGCATTAGCAC
GCCGCTTAAGAAGGGCGAGATCAAGGACGGTGTGCAAATGTACGAGGTGG
ACTGGAAATGTCGTTACTTTACCGAGGACGTGCCCGCGCTGTGCGTGCTG
CGCGGGCTGGCACAGCTGCTGGGCGTAAAGACGGACACTATGGACATGCT
GATCAAGTGGGCGCAGAAGAACATGGACGGCGGCTATGAGTTCATCACCG
CCGATGGCAAGCTCAACACAGACCGCAAGAAGCTCATGTACACGCCGCAG
TACTGGGGCATTACAGATGCGGACGCGCTGGTGCGCTTCCATGCGTAA
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