Gvermi11648.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11648.t1
Unique NameGvermi11648.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1445427..1446230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1BSB5
PFAMsAsp_protease_2,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC
Max annot lvl4751|Fungi
Evalue2.4e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11648Gvermi11648Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1445427..1446230 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11648.t1.stop1Gvermi11648.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1445427..1445429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11648.t1.CDS1Gvermi11648.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1445427..1446230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11648.t1.exon1Gvermi11648.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1445427..1446230 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11648.t1.start1Gvermi11648.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1446228..1446230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11648.t1Gvermi11648.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1445427..1446230 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11648.t1 ID=Gvermi11648.t1|Name=Gvermi11648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=268bp
MEDGSSVPIVYKPLRRATKKHLPLPAAQEPGPDSRVSNKLRVAGAFTIPP
KSQVWVKVTSQQHGLRILQPLPSLYDKYTLAIANGFVHVEPNTSFYVLLA
NLGTTPQSLVKNQVIGSVMPHPIAMAPTIMTVAGVLGLVHSKEGEATGSC
RANVAPTPTEDSAEAAKKRSPTSFDRIDPVKALEELDLGHVPESHRDRLR
DMLRDFTTMWDGSLGEINTTEHWIDLMPNTRTVAQHPYRAGPAVSVEEEF
QVDKMLRAGVIEPAQSP*
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spliced messenger RNA

>Gvermi11648.t1 ID=Gvermi11648.t1|Name=Gvermi11648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_3404:1445427..1446230- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACGGATCCTCCGTCCCCATCGTCTACAAGCCGCTGAGGCGGGC
AACAAAGAAGCACTTGCCGTTACCTGCCGCGCAGGAGCCAGGCCCAGATA
GCCGCGTCTCAAACAAACTCCGCGTTGCGGGTGCTTTTACGATACCACCG
AAATCGCAGGTGTGGGTGAAGGTCACTTCGCAACAGCATGGGCTTAGGAT
ACTCCAACCCTTGCCCTCGCTGTACGACAAGTACACACTCGCCATTGCCA
ATGGCTTTGTGCATGTGGAACCGAACACCTCATTCTACGTGTTGCTCGCT
AACCTGGGGACGACTCCCCAAAGCTTGGTCAAAAACCAAGTCATTGGTTC
TGTCATGCCGCACCCCATTGCGATGGCGCCAACAATCATGACTGTCGCCG
GTGTCCTCGGTCTTGTCCACTCTAAGGAGGGAGAAGCAACCGGATCATGC
CGTGCCAATGTCGCGCCAACTCCGACGGAGGACAGTGCTGAAGCCGCGAA
GAAACGCAGCCCGACAAGCTTCGATCGAATTGATCCAGTCAAGGCCCTCG
AGGAACTCGACCTCGGTCATGTACCAGAGTCACACCGCGACCGTTTGCGG
GACATGCTCCGAGACTTCACCACTATGTGGGATGGCTCCCTAGGGGAGAT
AAATACAACGGAACACTGGATCGATTTGATGCCCAACACTCGGACAGTGG
CACAACACCCGTACAGGGCTGGGCCTGCCGTAAGTGTCGAAGAGGAATTC
CAAGTTGATAAGATGCTCCGTGCCGGAGTTATTGAACCGGCTCAGTCGCC
GTGA
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protein sequence of Gvermi11648.t1

>Gvermi11648.t1 ID=Gvermi11648.t1|Name=Gvermi11648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MEDGSSVPIVYKPLRRATKKHLPLPAAQEPGPDSRVSNKLRVAGAFTIPP
KSQVWVKVTSQQHGLRILQPLPSLYDKYTLAIANGFVHVEPNTSFYVLLA
NLGTTPQSLVKNQVIGSVMPHPIAMAPTIMTVAGVLGLVHSKEGEATGSC
RANVAPTPTEDSAEAAKKRSPTSFDRIDPVKALEELDLGHVPESHRDRLR
DMLRDFTTMWDGSLGEINTTEHWIDLMPNTRTVAQHPYRAGPAVSVEEEF
QVDKMLRAGVIEPAQSP*
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mRNA from alignment at ScGOVlb_3404:1445427..1446230-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11648.t1 ID=Gvermi11648.t1|Name=Gvermi11648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_3404:1445427..1446230- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGACGGATCCTCCGTCCCCATCGTCTACAAGCCGCTGAGGCGGGC
AACAAAGAAGCACTTGCCGTTACCTGCCGCGCAGGAGCCAGGCCCAGATA
GCCGCGTCTCAAACAAACTCCGCGTTGCGGGTGCTTTTACGATACCACCG
AAATCGCAGGTGTGGGTGAAGGTCACTTCGCAACAGCATGGGCTTAGGAT
ACTCCAACCCTTGCCCTCGCTGTACGACAAGTACACACTCGCCATTGCCA
ATGGCTTTGTGCATGTGGAACCGAACACCTCATTCTACGTGTTGCTCGCT
AACCTGGGGACGACTCCCCAAAGCTTGGTCAAAAACCAAGTCATTGGTTC
TGTCATGCCGCACCCCATTGCGATGGCGCCAACAATCATGACTGTCGCCG
GTGTCCTCGGTCTTGTCCACTCTAAGGAGGGAGAAGCAACCGGATCATGC
CGTGCCAATGTCGCGCCAACTCCGACGGAGGACAGTGCTGAAGCCGCGAA
GAAACGCAGCCCGACAAGCTTCGATCGAATTGATCCAGTCAAGGCCCTCG
AGGAACTCGACCTCGGTCATGTACCAGAGTCACACCGCGACCGTTTGCGG
GACATGCTCCGAGACTTCACCACTATGTGGGATGGCTCCCTAGGGGAGAT
AAATACAACGGAACACTGGATCGATTTGATGCCCAACACTCGGACAGTGG
CACAACACCCGTACAGGGCTGGGCCTGCCGTAAGTGTCGAAGAGGAATTC
CAAGTTGATAAGATGCTCCGTGCCGGAGTTATTGAACCGGCTCAGTCGCC
GTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1445427..1446230-

>Gvermi11648.t1 ID=Gvermi11648.t1|Name=Gvermi11648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=804bp|location=Sequence derived from alignment at ScGOVlb_3404:1445427..1446230- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGACGGATCCTCCGTCCCCATCGTCTACAAGCCGCTGAGGCGGGC
AACAAAGAAGCACTTGCCGTTACCTGCCGCGCAGGAGCCAGGCCCAGATA
GCCGCGTCTCAAACAAACTCCGCGTTGCGGGTGCTTTTACGATACCACCG
AAATCGCAGGTGTGGGTGAAGGTCACTTCGCAACAGCATGGGCTTAGGAT
ACTCCAACCCTTGCCCTCGCTGTACGACAAGTACACACTCGCCATTGCCA
ATGGCTTTGTGCATGTGGAACCGAACACCTCATTCTACGTGTTGCTCGCT
AACCTGGGGACGACTCCCCAAAGCTTGGTCAAAAACCAAGTCATTGGTTC
TGTCATGCCGCACCCCATTGCGATGGCGCCAACAATCATGACTGTCGCCG
GTGTCCTCGGTCTTGTCCACTCTAAGGAGGGAGAAGCAACCGGATCATGC
CGTGCCAATGTCGCGCCAACTCCGACGGAGGACAGTGCTGAAGCCGCGAA
GAAACGCAGCCCGACAAGCTTCGATCGAATTGATCCAGTCAAGGCCCTCG
AGGAACTCGACCTCGGTCATGTACCAGAGTCACACCGCGACCGTTTGCGG
GACATGCTCCGAGACTTCACCACTATGTGGGATGGCTCCCTAGGGGAGAT
AAATACAACGGAACACTGGATCGATTTGATGCCCAACACTCGGACAGTGG
CACAACACCCGTACAGGGCTGGGCCTGCCGTAAGTGTCGAAGAGGAATTC
CAAGTTGATAAGATGCTCCGTGCCGGAGTTATTGAACCGGCTCAGTCGCC
GTGA
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