Gvermi11644.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11644.t1
Unique NameGvermi11644.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1412294..1413796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709346.1
PFAMsPBD,PH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04409,ko:K08286
KEGG Pathwayko04010,ko04011,ko04012,ko04014,ko04024,ko04062,ko04360,ko04392,ko04510,ko04650,ko04660,ko04666,ko04810,ko05120,ko05205,ko05211,map04010,map04011,map04012,map04014,map04024,map04062,map04360,map04392,map04510,map04650,map04660,map04666,map04810,map05120,map05205,map05211
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001891,GO:0001932,GO:0001934,GO:0003674,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0007266,GO:0007346,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009267,GO:0009605,GO:0009893,GO:0009966,GO:0009987,GO:0009991,GO:0010562,GO:0010564,GO:0010604,GO:0010646,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0016905,GO:0017016,GO:0017022,GO:0017048,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030100,GO:0030587,GO:0031033,GO:0031034,GO:0031036,GO:0031038,GO:0031098,GO:0031152,GO:0031156,GO:0031252,GO:0031254,GO:0031267,GO:0031272,GO:0031273,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0032147,GO:0032153,GO:0032154,GO:0032155,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032502,GO:0032781,GO:0032879,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034622,GO:0035556,GO:0036211,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0043408,GO:0043412,GO:0043462,GO:0043549,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045159,GO:0045787,GO:0045807,GO:0045859,GO:0045860,GO:0045937,GO:0046777,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048870,GO:0050764,GO:0050766,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051641,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0060491,GO:0060627,GO:0061640,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090702,GO:0097204,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0099120,GO:0099568,GO:0120032,GO:0120033,GO:0120035,GO:0140096,GO:1901564,GO:1902463,GO:1902531,GO:1903047
Evalue1.79e-94
EggNOG OGsKOG0578@1|root,KOG0578@2759|Eukaryota
EC2.7.11.1
DescriptionRac GTPase binding
COG categoryF
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11644Gvermi11644Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1412294..1413796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11644.t1.stop1Gvermi11644.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1412294..1412296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11644.t1.CDS1Gvermi11644.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1412294..1413796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11644.t1.exon1Gvermi11644.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1412294..1413796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11644.t1.start1Gvermi11644.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1413794..1413796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11644.t1Gvermi11644.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1412294..1413796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11644.t1 ID=Gvermi11644.t1|Name=Gvermi11644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp
MDVLTSLRRILSPRDTDAKENTATNALPSAPHIPPYPRKRASPHKRKHAH
VGFPVASTHAVHVESDASASSGFRGLPAAMETELIKQGLSQEDFRADPDA
ALRAFQLYLYGAPPPMKKPPAIAVPKPKPPPAIPPAAPPAKPAKKKAPVV
KAPPKPPKQLPPRPPDRRPPPPHAPPTRVPRSAAPPSRAPRPLRAVDRRT
VMSIAPEQPVYIHNKDPSTVFSSMHQIGQGASGSVYEAATHDGRKVALKK
VQPANKTEADALEMEIRMMCCTRHPNLIKCHETYNYNGFMWISMEYMDGG
CLTDVLENYQRLSQTMEEAHIAFVLREVLKGLKFMHGMKRLHRDIKSDNV
LLTQQGKCKLADFGFCAELTEERKKRTTCVGTPYWMAPELIRQKEYDYKV
DLWSVGILAIECAEWEPPLMSEKPLRAMFLITTQAPPTLREPARWSSEFV
DFVTQCLVVNPARRASASQLLSHPFLKRAAEKEQVAAVFAKMRDDVRNSS
*
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spliced messenger RNA

>Gvermi11644.t1 ID=Gvermi11644.t1|Name=Gvermi11644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_3404:1412294..1413796- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCCTTACATCCCTCCGTCGCATCCTCTCTCCCCGCGACACTGA
CGCCAAGGAAAACACTGCCACTAACGCCCTCCCCTCAGCTCCCCATATTC
CCCCCTATCCCCGCAAGCGAGCTTCCCCCCACAAGCGCAAGCATGCCCAT
GTCGGCTTCCCCGTCGCCTCCACCCACGCTGTGCACGTCGAGTCTGACGC
CTCAGCCTCCTCTGGTTTCCGCGGCCTCCCAGCCGCCATGGAGACCGAGC
TCATCAAGCAGGGCCTCTCCCAAGAAGACTTCCGCGCAGATCCTGATGCT
GCTCTGCGTGCCTTCCAGCTCTATCTGTACGGCGCCCCCCCACCTATGAA
GAAACCCCCCGCCATCGCCGTGCCCAAGCCCAAGCCCCCTCCCGCCATCC
CTCCCGCAGCCCCTCCCGCCAAACCTGCCAAGAAGAAAGCGCCCGTCGTC
AAGGCCCCTCCGAAACCACCGAAGCAGCTTCCACCGCGTCCGCCAGACAG
GCGTCCACCGCCCCCGCATGCTCCGCCCACCCGCGTACCACGATCCGCCG
CGCCTCCCTCGCGCGCCCCACGCCCTCTTAGAGCCGTTGACCGCCGGACA
GTCATGTCCATAGCCCCGGAGCAGCCGGTGTACATCCACAACAAGGACCC
CAGCACCGTGTTCTCCAGTATGCACCAGATTGGACAGGGAGCATCGGGAA
GCGTGTATGAGGCAGCCACGCACGACGGACGTAAAGTGGCTCTGAAGAAA
GTCCAGCCGGCAAACAAGACAGAGGCTGATGCCCTGGAGATGGAGATCCG
CATGATGTGCTGCACACGTCACCCCAACCTCATCAAATGCCACGAGACCT
ACAATTACAATGGATTCATGTGGATCTCCATGGAATATATGGACGGCGGA
TGCCTCACCGACGTGTTGGAAAATTACCAGCGTCTCTCTCAAACCATGGA
AGAAGCGCACATTGCATTCGTTCTTCGCGAGGTGCTCAAGGGGCTCAAGT
TCATGCATGGAATGAAGCGCCTTCATCGCGATATCAAGTCGGACAATGTT
CTGCTCACGCAACAGGGGAAATGCAAGCTGGCCGATTTCGGCTTCTGCGC
TGAACTCACTGAGGAACGAAAGAAGCGCACAACCTGTGTTGGAACTCCAT
ACTGGATGGCCCCGGAACTCATTCGTCAGAAGGAGTACGATTACAAAGTG
GATCTGTGGAGCGTGGGCATCTTAGCCATTGAGTGTGCTGAATGGGAACC
GCCGCTCATGAGCGAAAAGCCGTTGCGCGCAATGTTCTTGATCACAACTC
AGGCACCCCCAACCTTGAGAGAACCAGCTAGATGGAGCTCCGAATTTGTC
GACTTTGTTACACAGTGCTTGGTGGTTAACCCGGCCAGGAGAGCTTCCGC
CAGTCAGTTGCTGAGCCACCCATTTCTGAAACGCGCAGCGGAAAAAGAGC
AAGTGGCGGCCGTGTTTGCAAAGATGCGCGACGATGTCAGGAATAGTAGC
TGA
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protein sequence of Gvermi11644.t1

>Gvermi11644.t1 ID=Gvermi11644.t1|Name=Gvermi11644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MDVLTSLRRILSPRDTDAKENTATNALPSAPHIPPYPRKRASPHKRKHAH
VGFPVASTHAVHVESDASASSGFRGLPAAMETELIKQGLSQEDFRADPDA
ALRAFQLYLYGAPPPMKKPPAIAVPKPKPPPAIPPAAPPAKPAKKKAPVV
KAPPKPPKQLPPRPPDRRPPPPHAPPTRVPRSAAPPSRAPRPLRAVDRRT
VMSIAPEQPVYIHNKDPSTVFSSMHQIGQGASGSVYEAATHDGRKVALKK
VQPANKTEADALEMEIRMMCCTRHPNLIKCHETYNYNGFMWISMEYMDGG
CLTDVLENYQRLSQTMEEAHIAFVLREVLKGLKFMHGMKRLHRDIKSDNV
LLTQQGKCKLADFGFCAELTEERKKRTTCVGTPYWMAPELIRQKEYDYKV
DLWSVGILAIECAEWEPPLMSEKPLRAMFLITTQAPPTLREPARWSSEFV
DFVTQCLVVNPARRASASQLLSHPFLKRAAEKEQVAAVFAKMRDDVRNSS
*
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mRNA from alignment at ScGOVlb_3404:1412294..1413796-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11644.t1 ID=Gvermi11644.t1|Name=Gvermi11644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_3404:1412294..1413796- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTCCTTACATCCCTCCGTCGCATCCTCTCTCCCCGCGACACTGA
CGCCAAGGAAAACACTGCCACTAACGCCCTCCCCTCAGCTCCCCATATTC
CCCCCTATCCCCGCAAGCGAGCTTCCCCCCACAAGCGCAAGCATGCCCAT
GTCGGCTTCCCCGTCGCCTCCACCCACGCTGTGCACGTCGAGTCTGACGC
CTCAGCCTCCTCTGGTTTCCGCGGCCTCCCAGCCGCCATGGAGACCGAGC
TCATCAAGCAGGGCCTCTCCCAAGAAGACTTCCGCGCAGATCCTGATGCT
GCTCTGCGTGCCTTCCAGCTCTATCTGTACGGCGCCCCCCCACCTATGAA
GAAACCCCCCGCCATCGCCGTGCCCAAGCCCAAGCCCCCTCCCGCCATCC
CTCCCGCAGCCCCTCCCGCCAAACCTGCCAAGAAGAAAGCGCCCGTCGTC
AAGGCCCCTCCGAAACCACCGAAGCAGCTTCCACCGCGTCCGCCAGACAG
GCGTCCACCGCCCCCGCATGCTCCGCCCACCCGCGTACCACGATCCGCCG
CGCCTCCCTCGCGCGCCCCACGCCCTCTTAGAGCCGTTGACCGCCGGACA
GTCATGTCCATAGCCCCGGAGCAGCCGGTGTACATCCACAACAAGGACCC
CAGCACCGTGTTCTCCAGTATGCACCAGATTGGACAGGGAGCATCGGGAA
GCGTGTATGAGGCAGCCACGCACGACGGACGTAAAGTGGCTCTGAAGAAA
GTCCAGCCGGCAAACAAGACAGAGGCTGATGCCCTGGAGATGGAGATCCG
CATGATGTGCTGCACACGTCACCCCAACCTCATCAAATGCCACGAGACCT
ACAATTACAATGGATTCATGTGGATCTCCATGGAATATATGGACGGCGGA
TGCCTCACCGACGTGTTGGAAAATTACCAGCGTCTCTCTCAAACCATGGA
AGAAGCGCACATTGCATTCGTTCTTCGCGAGGTGCTCAAGGGGCTCAAGT
TCATGCATGGAATGAAGCGCCTTCATCGCGATATCAAGTCGGACAATGTT
CTGCTCACGCAACAGGGGAAATGCAAGCTGGCCGATTTCGGCTTCTGCGC
TGAACTCACTGAGGAACGAAAGAAGCGCACAACCTGTGTTGGAACTCCAT
ACTGGATGGCCCCGGAACTCATTCGTCAGAAGGAGTACGATTACAAAGTG
GATCTGTGGAGCGTGGGCATCTTAGCCATTGAGTGTGCTGAATGGGAACC
GCCGCTCATGAGCGAAAAGCCGTTGCGCGCAATGTTCTTGATCACAACTC
AGGCACCCCCAACCTTGAGAGAACCAGCTAGATGGAGCTCCGAATTTGTC
GACTTTGTTACACAGTGCTTGGTGGTTAACCCGGCCAGGAGAGCTTCCGC
CAGTCAGTTGCTGAGCCACCCATTTCTGAAACGCGCAGCGGAAAAAGAGC
AAGTGGCGGCCGTGTTTGCAAAGATGCGCGACGATGTCAGGAATAGTAGC
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1412294..1413796-

>Gvermi11644.t1 ID=Gvermi11644.t1|Name=Gvermi11644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1503bp|location=Sequence derived from alignment at ScGOVlb_3404:1412294..1413796- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTCCTTACATCCCTCCGTCGCATCCTCTCTCCCCGCGACACTGA
CGCCAAGGAAAACACTGCCACTAACGCCCTCCCCTCAGCTCCCCATATTC
CCCCCTATCCCCGCAAGCGAGCTTCCCCCCACAAGCGCAAGCATGCCCAT
GTCGGCTTCCCCGTCGCCTCCACCCACGCTGTGCACGTCGAGTCTGACGC
CTCAGCCTCCTCTGGTTTCCGCGGCCTCCCAGCCGCCATGGAGACCGAGC
TCATCAAGCAGGGCCTCTCCCAAGAAGACTTCCGCGCAGATCCTGATGCT
GCTCTGCGTGCCTTCCAGCTCTATCTGTACGGCGCCCCCCCACCTATGAA
GAAACCCCCCGCCATCGCCGTGCCCAAGCCCAAGCCCCCTCCCGCCATCC
CTCCCGCAGCCCCTCCCGCCAAACCTGCCAAGAAGAAAGCGCCCGTCGTC
AAGGCCCCTCCGAAACCACCGAAGCAGCTTCCACCGCGTCCGCCAGACAG
GCGTCCACCGCCCCCGCATGCTCCGCCCACCCGCGTACCACGATCCGCCG
CGCCTCCCTCGCGCGCCCCACGCCCTCTTAGAGCCGTTGACCGCCGGACA
GTCATGTCCATAGCCCCGGAGCAGCCGGTGTACATCCACAACAAGGACCC
CAGCACCGTGTTCTCCAGTATGCACCAGATTGGACAGGGAGCATCGGGAA
GCGTGTATGAGGCAGCCACGCACGACGGACGTAAAGTGGCTCTGAAGAAA
GTCCAGCCGGCAAACAAGACAGAGGCTGATGCCCTGGAGATGGAGATCCG
CATGATGTGCTGCACACGTCACCCCAACCTCATCAAATGCCACGAGACCT
ACAATTACAATGGATTCATGTGGATCTCCATGGAATATATGGACGGCGGA
TGCCTCACCGACGTGTTGGAAAATTACCAGCGTCTCTCTCAAACCATGGA
AGAAGCGCACATTGCATTCGTTCTTCGCGAGGTGCTCAAGGGGCTCAAGT
TCATGCATGGAATGAAGCGCCTTCATCGCGATATCAAGTCGGACAATGTT
CTGCTCACGCAACAGGGGAAATGCAAGCTGGCCGATTTCGGCTTCTGCGC
TGAACTCACTGAGGAACGAAAGAAGCGCACAACCTGTGTTGGAACTCCAT
ACTGGATGGCCCCGGAACTCATTCGTCAGAAGGAGTACGATTACAAAGTG
GATCTGTGGAGCGTGGGCATCTTAGCCATTGAGTGTGCTGAATGGGAACC
GCCGCTCATGAGCGAAAAGCCGTTGCGCGCAATGTTCTTGATCACAACTC
AGGCACCCCCAACCTTGAGAGAACCAGCTAGATGGAGCTCCGAATTTGTC
GACTTTGTTACACAGTGCTTGGTGGTTAACCCGGCCAGGAGAGCTTCCGC
CAGTCAGTTGCTGAGCCACCCATTTCTGAAACGCGCAGCGGAAAAAGAGC
AAGTGGCGGCCGTGTTTGCAAAGATGCGCGACGATGTCAGGAATAGTAGC
TGA
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