Gvermi11641.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11641.t1
Unique NameGvermi11641.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1394986..1396470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005647514.1
PFAMszf-CCCH
Max annot lvl2759|Eukaryota
KEGG koko:K07560
Evalue5.51e-07
EggNOG OGsKOG1595@1|root,KOG1595@2759|Eukaryota
DescriptionDNA binding
COG categoryK
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11641Gvermi11641Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1394986..1396470 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11641.t1.stop1Gvermi11641.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1394986..1394988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11641.t1.CDS1Gvermi11641.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1394986..1396470 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11641.t1.exon1Gvermi11641.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1394986..1396470 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11641.t1.start1Gvermi11641.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1396468..1396470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11641.t1Gvermi11641.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1394986..1396470 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11641.t1 ID=Gvermi11641.t1|Name=Gvermi11641.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp
MTTTQPNPRSVDLPSVSAPPTAMLPTSRHPAAWPASPPVPRRVPPITVPT
LDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF
TPAPAPFRAGLFAPPRKDGIAAIAAPQHQHPHAAQPPSQHPSHPSHPSPQ
DFPRMFKVYPCRTRDHCLAAGTAPDCFYYHSPDTDRRRLNVAMYKPHMCR
FIDDSAGCRKADRCPFSHNDFERRYHPDRFGKETCRDFLRGDCPRRFCTF
RHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAK
KHSGWRLQGFDPRGRDDQKIKFVTARVEQVKRALKGAGEKKWASTLKTSS
LRDMMSGVRKVAEEVRERCRADERYGASATDGGSQEVHRLIRAIFSNTNW
SCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMCSQDKQAALSNVENNG
AMNNKTNRPVGGVDRKKGGSLEEQPHNVVSTLWACPSSLGQLTA*
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spliced messenger RNA

>Gvermi11641.t1 ID=Gvermi11641.t1|Name=Gvermi11641.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at ScGOVlb_3404:1394986..1396470- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACAACCCAACCCAATCCCCGCTCCGTCGATCTCCCATCAGTCTC
CGCCCCTCCCACAGCCATGCTGCCCACCTCCCGCCACCCCGCCGCGTGGC
CCGCCTCCCCACCCGTCCCCCGCCGCGTCCCGCCTATCACCGTCCCCACG
CTTGACCCTCCTCCCGCAATCACCTCCTCCTCTGTGTCCAGCCCATCCGC
CCCGCACTCCGACGGCCCCGACGAGGTGGACGAGCTCCTCGACGGCATTG
ATCGCGTCCGCATTGACGACCTCTGGCAAACCCCCCGCCATCTCGACTTC
ACCCCCGCCCCAGCTCCATTCCGCGCCGGCCTCTTCGCCCCGCCCCGCAA
GGACGGCATCGCCGCCATAGCCGCCCCGCAGCACCAACACCCGCACGCTG
CTCAGCCCCCCTCACAGCACCCGTCGCACCCGTCGCACCCGTCACCACAG
GACTTCCCGCGCATGTTCAAGGTGTACCCCTGTCGCACTCGCGATCACTG
CCTTGCCGCGGGCACTGCGCCGGACTGCTTCTACTACCACTCGCCCGATA
CTGACCGCCGCCGCCTCAACGTGGCCATGTACAAGCCGCACATGTGTCGC
TTCATCGACGACTCCGCTGGCTGTCGCAAGGCGGACCGCTGCCCGTTCTC
GCACAACGACTTTGAGCGTCGTTACCATCCCGACCGCTTCGGAAAGGAGA
CGTGTCGCGACTTTCTCCGCGGCGACTGCCCGCGCCGCTTCTGCACGTTC
CGCCACGAGGTGTCGTCCAACGTGCAGGTGTCGCTGCTGCACATGCAGCA
AATGAGCGACAAGGAACTGTTGCAGCTGGTGCTTAAGATCCCCGAAGCGC
AGGGACGCGCGCTGTGTGAGAAGCTGCTGCGCCGCTTCGGGCACGCTAAG
AAGCACTCCGGCTGGCGCCTACAGGGCTTCGACCCGCGCGGGCGCGACGA
TCAGAAGATCAAGTTTGTGACGGCGCGCGTGGAGCAGGTGAAGCGTGCGC
TCAAGGGTGCCGGCGAGAAGAAGTGGGCGTCTACGCTGAAGACGTCCAGC
CTGCGTGACATGATGAGCGGCGTGCGCAAGGTGGCTGAGGAGGTTCGCGA
ACGCTGTCGCGCCGATGAACGTTACGGCGCCTCGGCCACTGACGGTGGCT
CTCAGGAGGTGCATCGACTGATTCGGGCAATTTTCTCGAACACCAACTGG
AGCTGTCACTCGCAGGAGGGTGATAACCCATTTCTGGTTACACCCGAGAA
CCAGAATGATGCTATGACCGCTCTGGAGAAACTGGTGCATATTGTTGTGA
TGTGCAGCCAGGATAAGCAAGCTGCGTTGAGCAACGTGGAAAACAATGGT
GCAATGAACAACAAGACTAACAGGCCTGTCGGCGGTGTGGACAGGAAGAA
GGGCGGCTCGTTGGAGGAGCAGCCGCACAACGTTGTGTCCACGCTGTGGG
CGTGCCCGTCGTCTCTGGGTCAGCTGACTGCATGA
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protein sequence of Gvermi11641.t1

>Gvermi11641.t1 ID=Gvermi11641.t1|Name=Gvermi11641.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=495bp
MTTTQPNPRSVDLPSVSAPPTAMLPTSRHPAAWPASPPVPRRVPPITVPT
LDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF
TPAPAPFRAGLFAPPRKDGIAAIAAPQHQHPHAAQPPSQHPSHPSHPSPQ
DFPRMFKVYPCRTRDHCLAAGTAPDCFYYHSPDTDRRRLNVAMYKPHMCR
FIDDSAGCRKADRCPFSHNDFERRYHPDRFGKETCRDFLRGDCPRRFCTF
RHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAK
KHSGWRLQGFDPRGRDDQKIKFVTARVEQVKRALKGAGEKKWASTLKTSS
LRDMMSGVRKVAEEVRERCRADERYGASATDGGSQEVHRLIRAIFSNTNW
SCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMCSQDKQAALSNVENNG
AMNNKTNRPVGGVDRKKGGSLEEQPHNVVSTLWACPSSLGQLTA*
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mRNA from alignment at ScGOVlb_3404:1394986..1396470-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11641.t1 ID=Gvermi11641.t1|Name=Gvermi11641.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at ScGOVlb_3404:1394986..1396470- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACAACCCAACCCAATCCCCGCTCCGTCGATCTCCCATCAGTCTC
CGCCCCTCCCACAGCCATGCTGCCCACCTCCCGCCACCCCGCCGCGTGGC
CCGCCTCCCCACCCGTCCCCCGCCGCGTCCCGCCTATCACCGTCCCCACG
CTTGACCCTCCTCCCGCAATCACCTCCTCCTCTGTGTCCAGCCCATCCGC
CCCGCACTCCGACGGCCCCGACGAGGTGGACGAGCTCCTCGACGGCATTG
ATCGCGTCCGCATTGACGACCTCTGGCAAACCCCCCGCCATCTCGACTTC
ACCCCCGCCCCAGCTCCATTCCGCGCCGGCCTCTTCGCCCCGCCCCGCAA
GGACGGCATCGCCGCCATAGCCGCCCCGCAGCACCAACACCCGCACGCTG
CTCAGCCCCCCTCACAGCACCCGTCGCACCCGTCGCACCCGTCACCACAG
GACTTCCCGCGCATGTTCAAGGTGTACCCCTGTCGCACTCGCGATCACTG
CCTTGCCGCGGGCACTGCGCCGGACTGCTTCTACTACCACTCGCCCGATA
CTGACCGCCGCCGCCTCAACGTGGCCATGTACAAGCCGCACATGTGTCGC
TTCATCGACGACTCCGCTGGCTGTCGCAAGGCGGACCGCTGCCCGTTCTC
GCACAACGACTTTGAGCGTCGTTACCATCCCGACCGCTTCGGAAAGGAGA
CGTGTCGCGACTTTCTCCGCGGCGACTGCCCGCGCCGCTTCTGCACGTTC
CGCCACGAGGTGTCGTCCAACGTGCAGGTGTCGCTGCTGCACATGCAGCA
AATGAGCGACAAGGAACTGTTGCAGCTGGTGCTTAAGATCCCCGAAGCGC
AGGGACGCGCGCTGTGTGAGAAGCTGCTGCGCCGCTTCGGGCACGCTAAG
AAGCACTCCGGCTGGCGCCTACAGGGCTTCGACCCGCGCGGGCGCGACGA
TCAGAAGATCAAGTTTGTGACGGCGCGCGTGGAGCAGGTGAAGCGTGCGC
TCAAGGGTGCCGGCGAGAAGAAGTGGGCGTCTACGCTGAAGACGTCCAGC
CTGCGTGACATGATGAGCGGCGTGCGCAAGGTGGCTGAGGAGGTTCGCGA
ACGCTGTCGCGCCGATGAACGTTACGGCGCCTCGGCCACTGACGGTGGCT
CTCAGGAGGTGCATCGACTGATTCGGGCAATTTTCTCGAACACCAACTGG
AGCTGTCACTCGCAGGAGGGTGATAACCCATTTCTGGTTACACCCGAGAA
CCAGAATGATGCTATGACCGCTCTGGAGAAACTGGTGCATATTGTTGTGA
TGTGCAGCCAGGATAAGCAAGCTGCGTTGAGCAACGTGGAAAACAATGGT
GCAATGAACAACAAGACTAACAGGCCTGTCGGCGGTGTGGACAGGAAGAA
GGGCGGCTCGTTGGAGGAGCAGCCGCACAACGTTGTGTCCACGCTGTGGG
CGTGCCCGTCGTCTCTGGGTCAGCTGACTGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1394986..1396470-

>Gvermi11641.t1 ID=Gvermi11641.t1|Name=Gvermi11641.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1485bp|location=Sequence derived from alignment at ScGOVlb_3404:1394986..1396470- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACAACCCAACCCAATCCCCGCTCCGTCGATCTCCCATCAGTCTC
CGCCCCTCCCACAGCCATGCTGCCCACCTCCCGCCACCCCGCCGCGTGGC
CCGCCTCCCCACCCGTCCCCCGCCGCGTCCCGCCTATCACCGTCCCCACG
CTTGACCCTCCTCCCGCAATCACCTCCTCCTCTGTGTCCAGCCCATCCGC
CCCGCACTCCGACGGCCCCGACGAGGTGGACGAGCTCCTCGACGGCATTG
ATCGCGTCCGCATTGACGACCTCTGGCAAACCCCCCGCCATCTCGACTTC
ACCCCCGCCCCAGCTCCATTCCGCGCCGGCCTCTTCGCCCCGCCCCGCAA
GGACGGCATCGCCGCCATAGCCGCCCCGCAGCACCAACACCCGCACGCTG
CTCAGCCCCCCTCACAGCACCCGTCGCACCCGTCGCACCCGTCACCACAG
GACTTCCCGCGCATGTTCAAGGTGTACCCCTGTCGCACTCGCGATCACTG
CCTTGCCGCGGGCACTGCGCCGGACTGCTTCTACTACCACTCGCCCGATA
CTGACCGCCGCCGCCTCAACGTGGCCATGTACAAGCCGCACATGTGTCGC
TTCATCGACGACTCCGCTGGCTGTCGCAAGGCGGACCGCTGCCCGTTCTC
GCACAACGACTTTGAGCGTCGTTACCATCCCGACCGCTTCGGAAAGGAGA
CGTGTCGCGACTTTCTCCGCGGCGACTGCCCGCGCCGCTTCTGCACGTTC
CGCCACGAGGTGTCGTCCAACGTGCAGGTGTCGCTGCTGCACATGCAGCA
AATGAGCGACAAGGAACTGTTGCAGCTGGTGCTTAAGATCCCCGAAGCGC
AGGGACGCGCGCTGTGTGAGAAGCTGCTGCGCCGCTTCGGGCACGCTAAG
AAGCACTCCGGCTGGCGCCTACAGGGCTTCGACCCGCGCGGGCGCGACGA
TCAGAAGATCAAGTTTGTGACGGCGCGCGTGGAGCAGGTGAAGCGTGCGC
TCAAGGGTGCCGGCGAGAAGAAGTGGGCGTCTACGCTGAAGACGTCCAGC
CTGCGTGACATGATGAGCGGCGTGCGCAAGGTGGCTGAGGAGGTTCGCGA
ACGCTGTCGCGCCGATGAACGTTACGGCGCCTCGGCCACTGACGGTGGCT
CTCAGGAGGTGCATCGACTGATTCGGGCAATTTTCTCGAACACCAACTGG
AGCTGTCACTCGCAGGAGGGTGATAACCCATTTCTGGTTACACCCGAGAA
CCAGAATGATGCTATGACCGCTCTGGAGAAACTGGTGCATATTGTTGTGA
TGTGCAGCCAGGATAAGCAAGCTGCGTTGAGCAACGTGGAAAACAATGGT
GCAATGAACAACAAGACTAACAGGCCTGTCGGCGGTGTGGACAGGAAGAA
GGGCGGCTCGTTGGAGGAGCAGCCGCACAACGTTGTGTCCACGCTGTGGG
CGTGCCCGTCGTCTCTGGGTCAGCTGACTGCATGA
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