Gvermi11639.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11639.t1
Unique NameGvermi11639.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1386759..1388297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706342.1
Preferred nameVCX1
PFAMsNa_Ca_ex
Max annot lvl2759|Eukaryota
KEGG koko:K07300,ko:K08286,ko:K11699,ko:K12619,ko:K20404
KEGG TC2.A.19
KEGG Pathwayko03008,ko03018,ko04150,map03008,map03018,map04150
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0007034,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015368,GO:0015369,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0019725,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0034220,GO:0034486,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0048878,GO:0050801,GO:0051139,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060401,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071804,GO:0071805,GO:0072503,GO:0072507,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098852,GO:0099516,GO:0140146,GO:1901660,GO:1902600
Evalue6.09e-92
EggNOG OGsCOG0387@1|root,KOG1397@2759|Eukaryota
EC2.7.7.48
Descriptioncalcium:proton antiporter activity
COG categoryP
BRITEko00000,ko00001,ko01000,ko02000,ko03009,ko03016,ko03019,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11639Gvermi11639Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1386759..1388297 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11639.t1.start1Gvermi11639.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1386759..1386761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11639.t1.CDS1Gvermi11639.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1386759..1388297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11639.t1.exon1Gvermi11639.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1386759..1388297 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11639.t1.stop1Gvermi11639.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1388295..1388297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11639.t1Gvermi11639.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1386759..1388297 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11639.t1 ID=Gvermi11639.t1|Name=Gvermi11639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp
MEVGSRRRERLDVSRSTPCLDEVEEVNYAPLHDPTSLPHTSTHPHNLPLP
SSQRTPSSTLSPTSLTDSAIMMDSSCPISKARTYGYGTAPSLPGSDVSQL
TGHHPHVATRRSSDPIMGRRLSHYSEMNQSAYCQLNQMRNGINLGLDGYS
SNLNVMLVFVPLGILAGLLQLPDAFIFIFNFLGMVPLAMLLGKATEDIAE
HTNETFGALVNVTFGNAVELILSISALRAGRMTLIQDTIAGSVLSNLLLV
LGSAFFFGGLRYREQMVLPAVSEANADLLSFAVFGFSVPALFAFAIPDDG
SKAMTEEKMSLVTSVCLLCMYVMYLAFQLYTHAELYEGIDEEVDEEAGAA
APQSRDEQVASLPVASAILVGMVIMVAICSEFLVDSIDGFSKYVGLGQKF
IAVILLPVVGNAVEHMSAILVARHNKIDLSIGIACGSSVQIALFAAPFLV
VISWLFGSQHLTLRFQMFETVCIGFSVFVVNATLRDSRSNWLEGAVLVMC
YVILAAAFYFMG*
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spliced messenger RNA

>Gvermi11639.t1 ID=Gvermi11639.t1|Name=Gvermi11639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:1386759..1388297+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTCGGTTCGCGCAGAAGAGAACGTTTGGATGTCAGCCGCTCAAC
TCCCTGCCTCGACGAGGTAGAGGAGGTCAACTATGCGCCGTTACATGATC
CCACCTCGCTGCCACATACTTCAACCCATCCGCACAATCTGCCCCTGCCC
TCCTCACAGCGAACGCCATCTTCAACGCTTTCCCCAACATCTTTAACGGA
TTCTGCAATCATGATGGACTCGTCTTGTCCTATTTCAAAAGCACGCACCT
ATGGCTACGGCACAGCCCCCTCTCTTCCGGGGAGCGATGTGTCGCAATTG
ACAGGACACCACCCCCACGTAGCCACACGCCGTTCTTCCGACCCCATCAT
GGGTCGCCGCCTTTCACACTACTCAGAGATGAATCAGTCCGCATATTGTC
AGCTTAACCAGATGCGGAATGGAATAAACTTAGGGCTCGACGGATACTCT
TCTAATTTGAATGTAATGCTCGTCTTTGTTCCGCTGGGTATTCTTGCCGG
TTTGCTGCAACTTCCCGACGCTTTTATCTTTATATTCAACTTCCTTGGCA
TGGTACCGTTGGCAATGCTTCTAGGGAAAGCAACCGAAGATATTGCTGAG
CACACCAATGAAACCTTTGGTGCCCTTGTCAACGTCACGTTTGGCAACGC
AGTGGAACTGATTCTGTCAATCTCAGCACTACGAGCCGGGCGAATGACGC
TAATTCAGGACACCATCGCTGGTTCTGTGCTGAGTAATTTGCTACTTGTT
CTGGGCTCAGCTTTCTTCTTTGGCGGACTGCGATACCGGGAACAGATGGT
CTTACCAGCAGTAAGCGAAGCGAACGCAGACCTGCTTTCCTTTGCCGTAT
TCGGCTTTTCCGTTCCTGCGTTGTTTGCGTTTGCAATTCCGGACGATGGT
AGCAAGGCTATGACGGAAGAGAAAATGAGTCTGGTGACTAGCGTTTGTCT
ACTGTGCATGTATGTCATGTATCTTGCGTTCCAACTCTACACTCACGCAG
AGCTGTACGAGGGCATCGATGAAGAGGTCGATGAGGAAGCGGGGGCGGCT
GCGCCACAGTCACGAGACGAGCAAGTGGCCAGCTTACCTGTGGCCTCGGC
TATTTTGGTGGGCATGGTTATCATGGTGGCCATTTGCTCTGAATTCCTGG
TGGACTCCATCGACGGCTTTTCCAAATACGTGGGGCTGGGTCAAAAGTTC
ATCGCCGTGATCCTTCTGCCAGTGGTTGGTAATGCGGTTGAGCACATGTC
TGCAATTTTGGTGGCTCGGCATAACAAGATTGATTTGTCTATAGGGATTG
CTTGTGGTAGCAGTGTGCAGATCGCACTGTTCGCTGCCCCGTTTCTGGTG
GTGATCTCGTGGCTGTTCGGGTCTCAGCACCTGACATTGAGATTCCAAAT
GTTTGAGACAGTGTGCATAGGGTTCTCGGTGTTTGTAGTGAACGCGACTC
TGAGAGACTCGCGGTCCAACTGGTTGGAGGGAGCTGTGTTGGTGATGTGC
TACGTCATCCTAGCAGCAGCATTTTATTTCATGGGATAA
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protein sequence of Gvermi11639.t1

>Gvermi11639.t1 ID=Gvermi11639.t1|Name=Gvermi11639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=513bp
MEVGSRRRERLDVSRSTPCLDEVEEVNYAPLHDPTSLPHTSTHPHNLPLP
SSQRTPSSTLSPTSLTDSAIMMDSSCPISKARTYGYGTAPSLPGSDVSQL
TGHHPHVATRRSSDPIMGRRLSHYSEMNQSAYCQLNQMRNGINLGLDGYS
SNLNVMLVFVPLGILAGLLQLPDAFIFIFNFLGMVPLAMLLGKATEDIAE
HTNETFGALVNVTFGNAVELILSISALRAGRMTLIQDTIAGSVLSNLLLV
LGSAFFFGGLRYREQMVLPAVSEANADLLSFAVFGFSVPALFAFAIPDDG
SKAMTEEKMSLVTSVCLLCMYVMYLAFQLYTHAELYEGIDEEVDEEAGAA
APQSRDEQVASLPVASAILVGMVIMVAICSEFLVDSIDGFSKYVGLGQKF
IAVILLPVVGNAVEHMSAILVARHNKIDLSIGIACGSSVQIALFAAPFLV
VISWLFGSQHLTLRFQMFETVCIGFSVFVVNATLRDSRSNWLEGAVLVMC
YVILAAAFYFMG*
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mRNA from alignment at ScGOVlb_3404:1386759..1388297+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11639.t1 ID=Gvermi11639.t1|Name=Gvermi11639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:1386759..1388297+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGTCGGTTCGCGCAGAAGAGAACGTTTGGATGTCAGCCGCTCAAC
TCCCTGCCTCGACGAGGTAGAGGAGGTCAACTATGCGCCGTTACATGATC
CCACCTCGCTGCCACATACTTCAACCCATCCGCACAATCTGCCCCTGCCC
TCCTCACAGCGAACGCCATCTTCAACGCTTTCCCCAACATCTTTAACGGA
TTCTGCAATCATGATGGACTCGTCTTGTCCTATTTCAAAAGCACGCACCT
ATGGCTACGGCACAGCCCCCTCTCTTCCGGGGAGCGATGTGTCGCAATTG
ACAGGACACCACCCCCACGTAGCCACACGCCGTTCTTCCGACCCCATCAT
GGGTCGCCGCCTTTCACACTACTCAGAGATGAATCAGTCCGCATATTGTC
AGCTTAACCAGATGCGGAATGGAATAAACTTAGGGCTCGACGGATACTCT
TCTAATTTGAATGTAATGCTCGTCTTTGTTCCGCTGGGTATTCTTGCCGG
TTTGCTGCAACTTCCCGACGCTTTTATCTTTATATTCAACTTCCTTGGCA
TGGTACCGTTGGCAATGCTTCTAGGGAAAGCAACCGAAGATATTGCTGAG
CACACCAATGAAACCTTTGGTGCCCTTGTCAACGTCACGTTTGGCAACGC
AGTGGAACTGATTCTGTCAATCTCAGCACTACGAGCCGGGCGAATGACGC
TAATTCAGGACACCATCGCTGGTTCTGTGCTGAGTAATTTGCTACTTGTT
CTGGGCTCAGCTTTCTTCTTTGGCGGACTGCGATACCGGGAACAGATGGT
CTTACCAGCAGTAAGCGAAGCGAACGCAGACCTGCTTTCCTTTGCCGTAT
TCGGCTTTTCCGTTCCTGCGTTGTTTGCGTTTGCAATTCCGGACGATGGT
AGCAAGGCTATGACGGAAGAGAAAATGAGTCTGGTGACTAGCGTTTGTCT
ACTGTGCATGTATGTCATGTATCTTGCGTTCCAACTCTACACTCACGCAG
AGCTGTACGAGGGCATCGATGAAGAGGTCGATGAGGAAGCGGGGGCGGCT
GCGCCACAGTCACGAGACGAGCAAGTGGCCAGCTTACCTGTGGCCTCGGC
TATTTTGGTGGGCATGGTTATCATGGTGGCCATTTGCTCTGAATTCCTGG
TGGACTCCATCGACGGCTTTTCCAAATACGTGGGGCTGGGTCAAAAGTTC
ATCGCCGTGATCCTTCTGCCAGTGGTTGGTAATGCGGTTGAGCACATGTC
TGCAATTTTGGTGGCTCGGCATAACAAGATTGATTTGTCTATAGGGATTG
CTTGTGGTAGCAGTGTGCAGATCGCACTGTTCGCTGCCCCGTTTCTGGTG
GTGATCTCGTGGCTGTTCGGGTCTCAGCACCTGACATTGAGATTCCAAAT
GTTTGAGACAGTGTGCATAGGGTTCTCGGTGTTTGTAGTGAACGCGACTC
TGAGAGACTCGCGGTCCAACTGGTTGGAGGGAGCTGTGTTGGTGATGTGC
TACGTCATCCTAGCAGCAGCATTTTATTTCATGGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1386759..1388297+

>Gvermi11639.t1 ID=Gvermi11639.t1|Name=Gvermi11639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:1386759..1388297+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGTCGGTTCGCGCAGAAGAGAACGTTTGGATGTCAGCCGCTCAAC
TCCCTGCCTCGACGAGGTAGAGGAGGTCAACTATGCGCCGTTACATGATC
CCACCTCGCTGCCACATACTTCAACCCATCCGCACAATCTGCCCCTGCCC
TCCTCACAGCGAACGCCATCTTCAACGCTTTCCCCAACATCTTTAACGGA
TTCTGCAATCATGATGGACTCGTCTTGTCCTATTTCAAAAGCACGCACCT
ATGGCTACGGCACAGCCCCCTCTCTTCCGGGGAGCGATGTGTCGCAATTG
ACAGGACACCACCCCCACGTAGCCACACGCCGTTCTTCCGACCCCATCAT
GGGTCGCCGCCTTTCACACTACTCAGAGATGAATCAGTCCGCATATTGTC
AGCTTAACCAGATGCGGAATGGAATAAACTTAGGGCTCGACGGATACTCT
TCTAATTTGAATGTAATGCTCGTCTTTGTTCCGCTGGGTATTCTTGCCGG
TTTGCTGCAACTTCCCGACGCTTTTATCTTTATATTCAACTTCCTTGGCA
TGGTACCGTTGGCAATGCTTCTAGGGAAAGCAACCGAAGATATTGCTGAG
CACACCAATGAAACCTTTGGTGCCCTTGTCAACGTCACGTTTGGCAACGC
AGTGGAACTGATTCTGTCAATCTCAGCACTACGAGCCGGGCGAATGACGC
TAATTCAGGACACCATCGCTGGTTCTGTGCTGAGTAATTTGCTACTTGTT
CTGGGCTCAGCTTTCTTCTTTGGCGGACTGCGATACCGGGAACAGATGGT
CTTACCAGCAGTAAGCGAAGCGAACGCAGACCTGCTTTCCTTTGCCGTAT
TCGGCTTTTCCGTTCCTGCGTTGTTTGCGTTTGCAATTCCGGACGATGGT
AGCAAGGCTATGACGGAAGAGAAAATGAGTCTGGTGACTAGCGTTTGTCT
ACTGTGCATGTATGTCATGTATCTTGCGTTCCAACTCTACACTCACGCAG
AGCTGTACGAGGGCATCGATGAAGAGGTCGATGAGGAAGCGGGGGCGGCT
GCGCCACAGTCACGAGACGAGCAAGTGGCCAGCTTACCTGTGGCCTCGGC
TATTTTGGTGGGCATGGTTATCATGGTGGCCATTTGCTCTGAATTCCTGG
TGGACTCCATCGACGGCTTTTCCAAATACGTGGGGCTGGGTCAAAAGTTC
ATCGCCGTGATCCTTCTGCCAGTGGTTGGTAATGCGGTTGAGCACATGTC
TGCAATTTTGGTGGCTCGGCATAACAAGATTGATTTGTCTATAGGGATTG
CTTGTGGTAGCAGTGTGCAGATCGCACTGTTCGCTGCCCCGTTTCTGGTG
GTGATCTCGTGGCTGTTCGGGTCTCAGCACCTGACATTGAGATTCCAAAT
GTTTGAGACAGTGTGCATAGGGTTCTCGGTGTTTGTAGTGAACGCGACTC
TGAGAGACTCGCGGTCCAACTGGTTGGAGGGAGCTGTGTTGGTGATGTGC
TACGTCATCCTAGCAGCAGCATTTTATTTCATGGGATAA
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