Gvermi11638.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11638.t1
Unique NameGvermi11638.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1336529..1337866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr38966
PFAMsInhibitor_I9,Peptidase_S8
Max annot lvl2759|Eukaryota
Evalue1.71e-35
EggNOG OGsCOG1404@1|root,KOG1153@2759|Eukaryota,2XEIX@2836|Bacillariophyta
DescriptionBelongs to the peptidase S8 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11638Gvermi11638Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1336529..1337866 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11638.t1.start1Gvermi11638.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1336529..1336531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11638.t1.CDS1Gvermi11638.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1336529..1337866 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11638.t1.exon1Gvermi11638.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1336529..1337866 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11638.t1.stop1Gvermi11638.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1337864..1337866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11638.t1Gvermi11638.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1336529..1337866 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11638.t1 ID=Gvermi11638.t1|Name=Gvermi11638.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=446bp
MLRAHMLLAAATLLVLAAAPAHAQNPNANANANANANANANGRGPRPRER
PLPITAAAAAVFGPDLTRQNGERIDGEFIVQMDGACERACIGQFQRALNQ
DAATRGCTSAGRAIAIGRLRFLSIKCPKGRNLRRDKVDVAVRSLSRTADV
PQITLVEEDFVVTIASVPTSIWGVDETDGGVTQQGPSYVRDGLRTCSATS
NNGQGVDIWVLDTGCAPTFGGLCTGYYGGSNLCLDVNGHGGHVAGTATDA
MYGVAPSARRNCVKVLNDNGSGSYLIAISAIEYVVDNKGPTGNIINFSLS
GPFYAPLNNAVQSAAALGVYFTLAAGNTMQTVCQLSPGSATGDKVYTVQA
HDITMNAAWFTNYATAFQDCTDISAPGVNILSFLNRPPGSFAASGTSMAA
PHVAGAIAILISDGQTPTLPMLTANGISVPHSIGLSKPSVGLACS*
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spliced messenger RNA

>Gvermi11638.t1 ID=Gvermi11638.t1|Name=Gvermi11638.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at ScGOVlb_3404:1336529..1337866+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGCGCCCACATGCTGCTGGCCGCCGCCACGCTGCTCGTTCTGGC
CGCCGCGCCGGCCCACGCGCAGAACCccaacgccaacgccaacgccaacg
ccaacgccaacgccaacgccaacgGCCGTGgcccccgcccgcgcgagcgc
ccgctgcccatcaccgccgctgccgccgccgTCTTCGGCCCGGATCTCAC
GCGCCAAAACGGCGAACGCATCGACGGCGAGTTCATCGTGCAGATGGACG
GCGCCTGCGAGCGCGCCTGCATCGGCCAGTTCCAGAGGGCCCTTAACCAG
GACGCCGCCACGCGCGGCTGCACGTCGGCCGGCCGTGCCATCGCCATCGG
CCGCCTGCGCTTCCTCAGCATCAAGTGCCCCAAGGGGCGCAACCTGCGCC
GCGACAAGGTCGACGTCGCCGTGCGCAGCCTGTCGCGCACCGCCGACGTG
CCGCAGATCACCCTCGTCGAGGaggacttcgtcgtcaccattgcgtccgt
ccccacgagcatctggggcgtggacgagaccgacggcggcgtcacgcagc
agggccccagctacgtccgcgacggcctgcgcacctgcagcgccaccagc
aacaacggccagggcgtcgacatctgggtgctcgacaccggctgcgcccc
aacgttcggcggcctgtgcaccggctactacggcggctccaacctgtgtc
tcgacgtcaacggccacggcggccacgtagcgggcaccgccaccgatgcc
atgtacggcgtcgcgcccagtgcgcgccgcaattgcgtcaaggtgctcaa
cgacaacggctccgggtcgtatctcattgccatttccgccatcgagtacg
tcgtcgacaacaaggggcccacgggcaacatcatcaacttttcgctctct
ggtcccttctacgccccgctcaacaacgccgtccaatccgccgctgccct
aggcgtgtacttcaccctcgccgcgggcaatactatgcagaccgtgtgcc
aattgtcgccaggttcggccacgggcgacaaggtgtacactgtacaggcg
cacgacatcaccatgaacgccgcctggttcaccaattacgcaactgcctt
ccaggactgcacggacatctctgcgccaggcgttaacatcttatccttct
tgaatcggcccccaggctccttcgctgcctcgggtacgtccatggccgcc
ccccacgttgctggagCGATTGCAATATTGATCTCGGACGGCCAAACACC
GACGCTTCCCATGCTCACCGCCAATGGCATTAGCGTGCCCCATAGTATTG
GCTTGAGCAAGCCCTCTGTAGGCCTGGCTTGTTCATGA
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protein sequence of Gvermi11638.t1

>Gvermi11638.t1 ID=Gvermi11638.t1|Name=Gvermi11638.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=446bp
MLRAHMLLAAATLLVLAAAPAHAQNPNANANANANANANANGRGPRPRER
PLPITAAAAAVFGPDLTRQNGERIDGEFIVQMDGACERACIGQFQRALNQ
DAATRGCTSAGRAIAIGRLRFLSIKCPKGRNLRRDKVDVAVRSLSRTADV
PQITLVEEDFVVTIASVPTSIWGVDETDGGVTQQGPSYVRDGLRTCSATS
NNGQGVDIWVLDTGCAPTFGGLCTGYYGGSNLCLDVNGHGGHVAGTATDA
MYGVAPSARRNCVKVLNDNGSGSYLIAISAIEYVVDNKGPTGNIINFSLS
GPFYAPLNNAVQSAAALGVYFTLAAGNTMQTVCQLSPGSATGDKVYTVQA
HDITMNAAWFTNYATAFQDCTDISAPGVNILSFLNRPPGSFAASGTSMAA
PHVAGAIAILISDGQTPTLPMLTANGISVPHSIGLSKPSVGLACS*
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mRNA from alignment at ScGOVlb_3404:1336529..1337866+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11638.t1 ID=Gvermi11638.t1|Name=Gvermi11638.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at ScGOVlb_3404:1336529..1337866+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACGCGCCCACATGCTGCTGGCCGCCGCCACGCTGCTCGTTCTGGC
CGCCGCGCCGGCCCACGCGCAGAACCccaacgccaacgccaacgccaacg
ccaacgccaacgccaacgccaacgGCCGTGgcccccgcccgcgcgagcgc
ccgctgcccatcaccgccgctgccgccgccgTCTTCGGCCCGGATCTCAC
GCGCCAAAACGGCGAACGCATCGACGGCGAGTTCATCGTGCAGATGGACG
GCGCCTGCGAGCGCGCCTGCATCGGCCAGTTCCAGAGGGCCCTTAACCAG
GACGCCGCCACGCGCGGCTGCACGTCGGCCGGCCGTGCCATCGCCATCGG
CCGCCTGCGCTTCCTCAGCATCAAGTGCCCCAAGGGGCGCAACCTGCGCC
GCGACAAGGTCGACGTCGCCGTGCGCAGCCTGTCGCGCACCGCCGACGTG
CCGCAGATCACCCTCGTCGAGGaggacttcgtcgtcaccattgcgtccgt
ccccacgagcatctggggcgtggacgagaccgacggcggcgtcacgcagc
agggccccagctacgtccgcgacggcctgcgcacctgcagcgccaccagc
aacaacggccagggcgtcgacatctgggtgctcgacaccggctgcgcccc
aacgttcggcggcctgtgcaccggctactacggcggctccaacctgtgtc
tcgacgtcaacggccacggcggccacgtagcgggcaccgccaccgatgcc
atgtacggcgtcgcgcccagtgcgcgccgcaattgcgtcaaggtgctcaa
cgacaacggctccgggtcgtatctcattgccatttccgccatcgagtacg
tcgtcgacaacaaggggcccacgggcaacatcatcaacttttcgctctct
ggtcccttctacgccccgctcaacaacgccgtccaatccgccgctgccct
aggcgtgtacttcaccctcgccgcgggcaatactatgcagaccgtgtgcc
aattgtcgccaggttcggccacgggcgacaaggtgtacactgtacaggcg
cacgacatcaccatgaacgccgcctggttcaccaattacgcaactgcctt
ccaggactgcacggacatctctgcgccaggcgttaacatcttatccttct
tgaatcggcccccaggctccttcgctgcctcgggtacgtccatggccgcc
ccccacgttgctggagCGATTGCAATATTGATCTCGGACGGCCAAACACC
GACGCTTCCCATGCTCACCGCCAATGGCATTAGCGTGCCCCATAGTATTG
GCTTGAGCAAGCCCTCTGTAGGCCTGGCTTGTTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1336529..1337866+

>Gvermi11638.t1 ID=Gvermi11638.t1|Name=Gvermi11638.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1338bp|location=Sequence derived from alignment at ScGOVlb_3404:1336529..1337866+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACGCGCCCACATGCTGCTGGCCGCCGCCACGCTGCTCGTTCTGGC
CGCCGCGCCGGCCCACGCGCAGAACCccaacgccaacgccaacgccaacg
ccaacgccaacgccaacgccaacgGCCGTGgcccccgcccgcgcgagcgc
ccgctgcccatcaccgccgctgccgccgccgTCTTCGGCCCGGATCTCAC
GCGCCAAAACGGCGAACGCATCGACGGCGAGTTCATCGTGCAGATGGACG
GCGCCTGCGAGCGCGCCTGCATCGGCCAGTTCCAGAGGGCCCTTAACCAG
GACGCCGCCACGCGCGGCTGCACGTCGGCCGGCCGTGCCATCGCCATCGG
CCGCCTGCGCTTCCTCAGCATCAAGTGCCCCAAGGGGCGCAACCTGCGCC
GCGACAAGGTCGACGTCGCCGTGCGCAGCCTGTCGCGCACCGCCGACGTG
CCGCAGATCACCCTCGTCGAGGaggacttcgtcgtcaccattgcgtccgt
ccccacgagcatctggggcgtggacgagaccgacggcggcgtcacgcagc
agggccccagctacgtccgcgacggcctgcgcacctgcagcgccaccagc
aacaacggccagggcgtcgacatctgggtgctcgacaccggctgcgcccc
aacgttcggcggcctgtgcaccggctactacggcggctccaacctgtgtc
tcgacgtcaacggccacggcggccacgtagcgggcaccgccaccgatgcc
atgtacggcgtcgcgcccagtgcgcgccgcaattgcgtcaaggtgctcaa
cgacaacggctccgggtcgtatctcattgccatttccgccatcgagtacg
tcgtcgacaacaaggggcccacgggcaacatcatcaacttttcgctctct
ggtcccttctacgccccgctcaacaacgccgtccaatccgccgctgccct
aggcgtgtacttcaccctcgccgcgggcaatactatgcagaccgtgtgcc
aattgtcgccaggttcggccacgggcgacaaggtgtacactgtacaggcg
cacgacatcaccatgaacgccgcctggttcaccaattacgcaactgcctt
ccaggactgcacggacatctctgcgccaggcgttaacatcttatccttct
tgaatcggcccccaggctccttcgctgcctcgggtacgtccatggccgcc
ccccacgttgctggagCGATTGCAATATTGATCTCGGACGGCCAAACACC
GACGCTTCCCATGCTCACCGCCAATGGCATTAGCGTGCCCCATAGTATTG
GCTTGAGCAAGCCCTCTGTAGGCCTGGCTTGTTCATGA
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