Gvermi11628.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11628.t1
Unique NameGvermi11628.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1260797..1261357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004993779.1
Max annot lvl33154|Opisthokonta
Evalue3.77e-45
EggNOG OGs2CYTX@1|root,2S6FF@2759|Eukaryota,3AADZ@33154|Opisthokonta
DescriptionFlagellar associated protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11628Gvermi11628Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1260797..1261357 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11628.t1.start1Gvermi11628.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1260797..1260799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11628.t1.CDS1Gvermi11628.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1260797..1261357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11628.t1.exon1Gvermi11628.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1260797..1261357 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11628.t1.stop1Gvermi11628.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1261355..1261357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11628.t1Gvermi11628.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1260797..1261357 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11628.t1 ID=Gvermi11628.t1|Name=Gvermi11628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=187bp
MAPTDKQMKASVKEGGKKGQDLAGMSDMGGVKFFSVAVESANGQWELMDA
VLEGMNKEVDPTADDRKGGAGHIGKCLLFADDKALLILCHVPDVLKDLIN
QQEWFTNVIESVNATKIGDAITIEGSGAGIVLKAEMKADPDANKFPLKER
DIAIGKSFEYLVSKELVRPDESDDDANYAEMADIEW*
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spliced messenger RNA

>Gvermi11628.t1 ID=Gvermi11628.t1|Name=Gvermi11628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp|location=Sequence derived from alignment at ScGOVlb_3404:1260797..1261357+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCAACAGACAAGCAGATGAAGGCCTCTGTCAAGGAGGGTGGCAA
GAAGGGGCAGGATCTGGCGGGCATGTCCGATATGGGCGGTGTCAAGTTCT
TCTCCGTCGCTGTGGAAAGCGCCAACGGCCAGTGGGAGCTCATGGACGCT
GTCTTAGAGGGTATGAACAAGGAGGTCGATCCCACCGCTGATGACCGCAA
GGGCGGCGCTGGCCACATTGGCAAGTGTTTACTCTTCGCAGACGACAAGG
CTCTCCTCATTCTCTGCCATGTTCCCGACGTGCTCAAGGATCTCATCAAT
CAACAAGAATGGTTTACTAATGTCATCGAAAGCGTCAACGCCACAAAGAT
TGGCGACGCCATCACCATCGAGGGTTCTGGTGCCGGCATCGTGCTTAAAG
CGGAAATGAAGGCCGATCCAGACGCCAATAAATTCCCACTAAAGGAGCGC
GACATCGCCATCGGAAAGAGCTTTGAGTACCTAGTCAGCAAGGAACTTGT
AAGGCCCGACGAGAGTGACGATGACGCCAATTATGCGGAGATGGCAGACA
TCGAGTGGTAA
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protein sequence of Gvermi11628.t1

>Gvermi11628.t1 ID=Gvermi11628.t1|Name=Gvermi11628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=187bp
MAPTDKQMKASVKEGGKKGQDLAGMSDMGGVKFFSVAVESANGQWELMDA
VLEGMNKEVDPTADDRKGGAGHIGKCLLFADDKALLILCHVPDVLKDLIN
QQEWFTNVIESVNATKIGDAITIEGSGAGIVLKAEMKADPDANKFPLKER
DIAIGKSFEYLVSKELVRPDESDDDANYAEMADIEW*
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mRNA from alignment at ScGOVlb_3404:1260797..1261357+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11628.t1 ID=Gvermi11628.t1|Name=Gvermi11628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp|location=Sequence derived from alignment at ScGOVlb_3404:1260797..1261357+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCAACAGACAAGCAGATGAAGGCCTCTGTCAAGGAGGGTGGCAA
GAAGGGGCAGGATCTGGCGGGCATGTCCGATATGGGCGGTGTCAAGTTCT
TCTCCGTCGCTGTGGAAAGCGCCAACGGCCAGTGGGAGCTCATGGACGCT
GTCTTAGAGGGTATGAACAAGGAGGTCGATCCCACCGCTGATGACCGCAA
GGGCGGCGCTGGCCACATTGGCAAGTGTTTACTCTTCGCAGACGACAAGG
CTCTCCTCATTCTCTGCCATGTTCCCGACGTGCTCAAGGATCTCATCAAT
CAACAAGAATGGTTTACTAATGTCATCGAAAGCGTCAACGCCACAAAGAT
TGGCGACGCCATCACCATCGAGGGTTCTGGTGCCGGCATCGTGCTTAAAG
CGGAAATGAAGGCCGATCCAGACGCCAATAAATTCCCACTAAAGGAGCGC
GACATCGCCATCGGAAAGAGCTTTGAGTACCTAGTCAGCAAGGAACTTGT
AAGGCCCGACGAGAGTGACGATGACGCCAATTATGCGGAGATGGCAGACA
TCGAGTGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1260797..1261357+

>Gvermi11628.t1 ID=Gvermi11628.t1|Name=Gvermi11628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=561bp|location=Sequence derived from alignment at ScGOVlb_3404:1260797..1261357+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCAACAGACAAGCAGATGAAGGCCTCTGTCAAGGAGGGTGGCAA
GAAGGGGCAGGATCTGGCGGGCATGTCCGATATGGGCGGTGTCAAGTTCT
TCTCCGTCGCTGTGGAAAGCGCCAACGGCCAGTGGGAGCTCATGGACGCT
GTCTTAGAGGGTATGAACAAGGAGGTCGATCCCACCGCTGATGACCGCAA
GGGCGGCGCTGGCCACATTGGCAAGTGTTTACTCTTCGCAGACGACAAGG
CTCTCCTCATTCTCTGCCATGTTCCCGACGTGCTCAAGGATCTCATCAAT
CAACAAGAATGGTTTACTAATGTCATCGAAAGCGTCAACGCCACAAAGAT
TGGCGACGCCATCACCATCGAGGGTTCTGGTGCCGGCATCGTGCTTAAAG
CGGAAATGAAGGCCGATCCAGACGCCAATAAATTCCCACTAAAGGAGCGC
GACATCGCCATCGGAAAGAGCTTTGAGTACCTAGTCAGCAAGGAACTTGT
AAGGCCCGACGAGAGTGACGATGACGCCAATTATGCGGAGATGGCAGACA
TCGAGTGGTAA
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