Gvermi11627.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11627.t1
Unique NameGvermi11627.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1258702..1260729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11627Gvermi11627Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1258702..1260729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11627.t1Gvermi11627.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1258702..1260729 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11627.t1.start1Gvermi11627.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1258702..1258704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11627.t1.CDS1Gvermi11627.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1258702..1260074 +
Gvermi11627.t1.CDS2Gvermi11627.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1260690..1260729 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11627.t1.exon1Gvermi11627.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1258702..1260074 +
Gvermi11627.t1.exon2Gvermi11627.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1260690..1260729 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11627.t1.intron1Gvermi11627.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1260075..1260689 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11627.t1.stop1Gvermi11627.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1260727..1260729 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11627.t1 ID=Gvermi11627.t1|Name=Gvermi11627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=471bp
MSTIRDQDHRYDKPRLHPNAGSVRTTENDQVPDGQQPEYFSNNTLETVFK
DNRVKARIDSAVLDGNKLSMSGVVTYIQISKHPNITDEADMVGKSGSSAL
ILQAELDGETLKIMWMKRSCACSADARFVIASAKEGDELWVAGSTTGIHL
GADTNTGEGMALMRYNSQGTQLLLRQTGAAGEKYEWVGFTMKAVNESRNV
TLVGTVNSERFEGMQNALVAQIANETGDIVQTFRISDGEDVVGETFWNAE
SMNGMLYVAGKRIIHKDLSPRSALTLTKIDTEKMEQVGSREFDNELQRGM
VLCADDEGVTASYVARNNNQGRVIVNEMDDKLDNVMRTEVKIQRDPIYQK
AVRSAMVACDATKSPPVLLMNTAEALNQTAPDWETKRKLNNQRPALLTVE
SKTFQSISQSQRSIEWVASGMLNRDGGDNWIIYGKTGNGKPLVSNGYLPK
PKKVVPTPSPFPLPLQRVRA*
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spliced messenger RNA

>Gvermi11627.t1 ID=Gvermi11627.t1|Name=Gvermi11627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at ScGOVlb_3404:1258702..1260729+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTATTCGGGATCAAGACCACAGATACGATAAACCACGACTGCA
CCCAAATGCAGGCTCTGTAAGAACGACCGAAAATGATCAAGTTCCCGACG
GGCAGCAACCGGAGTATTTTTCGAACAATACTCTGGAAACAGTTTTCAAA
GATAACAGGGTAAAGGCCCGAATCGATTCAGCAGTGCTTGATGGAAACAA
ATTGAGTATGAGTGGTGTTGTCACATATATTCAGATAAGCAAACATCCCA
ACATAACTGACGAGGCAGATATGGTTGGCAAATCTGGAAGCTCTGCGCTC
ATACTTCAGGCAGAATTGGATGGAGAAACTCTTAAAATTATGTGGATGAA
ACGGTCGTGTGCTTGTTCAGCAGATGCGAGGTTCGTGATTGCCAGCGCGA
AGGAAGGAGATGAATTATGGGTCGCAGGCAGTACCACTGGAATTCATCTC
GGTGCGGACACAAACACTGGGGAGGGTATGGCGCTGATGCGATACAATTC
GCAGGGAACCCAATTGCTACTACGCCAGACGGGAGCGGCTGGGGAGAAGT
ATGAATGGGTCGGGTTCACGATGAAAGCGGTGAACGAAAGCAGAAACGTA
ACGCTCGTGGGGACTGTAAACAGTGAGAGGTTTGAGGGGATGCAAAATGC
GCTCGTGGCTCAGATCGCGAATGAAACTGGGGATATAGTGCAAACATTTC
GGATCAGTGACGGCGAAGACGTGGTTGGAGAGACTTTCTGGAATGCTGAA
AGCATGAACGGTATGTTATATGTGGCCGGAAAACGAATCATTCACAAAGA
CCTGTCTCCCAGGTCCGCGCTGACGTTGACCAAGATTGATACAGAGAAAA
TGGAACAAGTCGGGTCGCGAGAGTTTGACAACGAACTGCAGAGAGGCATG
GTACTTTGCGCAGACGATGAAGGTGTAACAGCAAGCTATGTGGCACGAAA
CAACAACCAAGGACGTGTGATTGTCAATGAGATGGACGACAAACTTGACA
ATGTGATGCGAACGGAAGTGAAAATCCAGCGTGACCCGATTTACCAGAAG
GCAGTACGGTCAGCCATGGTTGCCTGCGATGCGACGAAGAGTCCGCCAGT
GTTGCTGATGAACACGGCTGAGGCACTGAACCAGACGGCGCCGGACTGGG
AAACGAAACGCAAGCTGAATAACCAACGGCCGGCGCTGCTGACGGTCGAG
AGCAAGACGTTCCAATCGATCTCTCAGTCGCAGCGGAGCATAGAGTGGGT
TGCGTCGGGAATGCTGAACAGAGACGGCGGCGACAACTGGATCATCTACG
GCAAAACGGGCAATGGAAAACCGCTTGTCTCCAACGGGTACCTGCCCAAA
CCGAAGAAAGTGGTGCCCACGCCCAGCCCCTTTCCGCTCCCTCTACAGCG
CGTTCGTGCTTAG
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protein sequence of Gvermi11627.t1

>Gvermi11627.t1 ID=Gvermi11627.t1|Name=Gvermi11627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=471bp
MSTIRDQDHRYDKPRLHPNAGSVRTTENDQVPDGQQPEYFSNNTLETVFK
DNRVKARIDSAVLDGNKLSMSGVVTYIQISKHPNITDEADMVGKSGSSAL
ILQAELDGETLKIMWMKRSCACSADARFVIASAKEGDELWVAGSTTGIHL
GADTNTGEGMALMRYNSQGTQLLLRQTGAAGEKYEWVGFTMKAVNESRNV
TLVGTVNSERFEGMQNALVAQIANETGDIVQTFRISDGEDVVGETFWNAE
SMNGMLYVAGKRIIHKDLSPRSALTLTKIDTEKMEQVGSREFDNELQRGM
VLCADDEGVTASYVARNNNQGRVIVNEMDDKLDNVMRTEVKIQRDPIYQK
AVRSAMVACDATKSPPVLLMNTAEALNQTAPDWETKRKLNNQRPALLTVE
SKTFQSISQSQRSIEWVASGMLNRDGGDNWIIYGKTGNGKPLVSNGYLPK
PKKVVPTPSPFPLPLQRVRA*
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mRNA from alignment at ScGOVlb_3404:1258702..1260729+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11627.t1 ID=Gvermi11627.t1|Name=Gvermi11627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_3404:1258702..1260729+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACTATTCGGGATCAAGACCACAGATACGATAAACCACGACTGCA
CCCAAATGCAGGCTCTGTAAGAACGACCGAAAATGATCAAGTTCCCGACG
GGCAGCAACCGGAGTATTTTTCGAACAATACTCTGGAAACAGTTTTCAAA
GATAACAGGGTAAAGGCCCGAATCGATTCAGCAGTGCTTGATGGAAACAA
ATTGAGTATGAGTGGTGTTGTCACATATATTCAGATAAGCAAACATCCCA
ACATAACTGACGAGGCAGATATGGTTGGCAAATCTGGAAGCTCTGCGCTC
ATACTTCAGGCAGAATTGGATGGAGAAACTCTTAAAATTATGTGGATGAA
ACGGTCGTGTGCTTGTTCAGCAGATGCGAGGTTCGTGATTGCCAGCGCGA
AGGAAGGAGATGAATTATGGGTCGCAGGCAGTACCACTGGAATTCATCTC
GGTGCGGACACAAACACTGGGGAGGGTATGGCGCTGATGCGATACAATTC
GCAGGGAACCCAATTGCTACTACGCCAGACGGGAGCGGCTGGGGAGAAGT
ATGAATGGGTCGGGTTCACGATGAAAGCGGTGAACGAAAGCAGAAACGTA
ACGCTCGTGGGGACTGTAAACAGTGAGAGGTTTGAGGGGATGCAAAATGC
GCTCGTGGCTCAGATCGCGAATGAAACTGGGGATATAGTGCAAACATTTC
GGATCAGTGACGGCGAAGACGTGGTTGGAGAGACTTTCTGGAATGCTGAA
AGCATGAACGGTATGTTATATGTGGCCGGAAAACGAATCATTCACAAAGA
CCTGTCTCCCAGGTCCGCGCTGACGTTGACCAAGATTGATACAGAGAAAA
TGGAACAAGTCGGGTCGCGAGAGTTTGACAACGAACTGCAGAGAGGCATG
GTACTTTGCGCAGACGATGAAGGTGTAACAGCAAGCTATGTGGCACGAAA
CAACAACCAAGGACGTGTGATTGTCAATGAGATGGACGACAAACTTGACA
ATGTGATGCGAACGGAAGTGAAAATCCAGCGTGACCCGATTTACCAGAAG
GCAGTACGGTCAGCCATGGTTGCCTGCGATGCGACGAAGAGTCCGCCAGT
GTTGCTGATGAACACGGCTGAGGCACTGAACCAGACGGCGCCGGACTGGG
AAACGAAACGCAAGCTGAATAACCAACGGCCGGCGCTGCTGACGGTCGAG
AGCAAGACGTTCCAATCGATCTCTCAGTCGCAGCGGAGCATAGAGTGGGT
TGCGTCGGGAATGCTGAACAGAGACGGCGGCGACAACTGGATCATCTACG
GCAAAACGGGCAATGGAAAACCGCTTGTCTCCAACGGGTACCTGCCCAAA
CCGAAGAAAGTGGTGCCCACGCCGTCGCCGTCACCAGACATAACGACGAC
GGGGGCAGCGTGCATCGGCGACCAGACGAGGATCGACGGCAAGGCAGTGA
CAGAGCTGATCGGCGCGCGCCGCGCGATGCGGCTGCAGCGCCACCCGTTG
CGACGCCGGCGGCACGGCGACGCACTGTGCCGGCGCGCGGGGGGGGACGT
GCTGTGCGCGACGGCGCAGCACGTGGTGCTGGTGGGGGAGGAGACGCTGT
TCATGCGCGAGTGGTGCGAGCGCACGCGCGACTGCGAGGTGCGGCGGCAG
CGACTGCTCAACTTCAAGGCGCCATGCGGGGTGACGCTGCCGCCGGCGGC
CGACGGCGCGCGCCTGACGATGCACTCCGGCGATGCGCCGTCCGCCCTCT
CCGTCGTGCGCGCCGAGTGCCATCTGCAGACCCGCTCCGTACTACATCGA
GCGTGGTGGCGCCTCATGACCCTCTGAGCCCTCCTCGCTAGCTAGTTCTT
GCTCAGTGCTCCACCTTGCCACATTAAATTAACTTATGTAAGCATTGTCT
CCCATGCTGCCACAGCCGCTTTAATCAATGCGCAATTACAGTGCAAATCC
CGACGGCGACTACTCGGTATCACTCTTGTTGGTTTCAGCAGCCCCTTTCC
GCTCCCTCTACAGCGCGTTCGTGCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1258702..1260729+

>Gvermi11627.t1 ID=Gvermi11627.t1|Name=Gvermi11627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1413bp|location=Sequence derived from alignment at ScGOVlb_3404:1258702..1260729+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACTATTCGGGATCAAGACCACAGATACGATAAACCACGACTGCA
CCCAAATGCAGGCTCTGTAAGAACGACCGAAAATGATCAAGTTCCCGACG
GGCAGCAACCGGAGTATTTTTCGAACAATACTCTGGAAACAGTTTTCAAA
GATAACAGGGTAAAGGCCCGAATCGATTCAGCAGTGCTTGATGGAAACAA
ATTGAGTATGAGTGGTGTTGTCACATATATTCAGATAAGCAAACATCCCA
ACATAACTGACGAGGCAGATATGGTTGGCAAATCTGGAAGCTCTGCGCTC
ATACTTCAGGCAGAATTGGATGGAGAAACTCTTAAAATTATGTGGATGAA
ACGGTCGTGTGCTTGTTCAGCAGATGCGAGGTTCGTGATTGCCAGCGCGA
AGGAAGGAGATGAATTATGGGTCGCAGGCAGTACCACTGGAATTCATCTC
GGTGCGGACACAAACACTGGGGAGGGTATGGCGCTGATGCGATACAATTC
GCAGGGAACCCAATTGCTACTACGCCAGACGGGAGCGGCTGGGGAGAAGT
ATGAATGGGTCGGGTTCACGATGAAAGCGGTGAACGAAAGCAGAAACGTA
ACGCTCGTGGGGACTGTAAACAGTGAGAGGTTTGAGGGGATGCAAAATGC
GCTCGTGGCTCAGATCGCGAATGAAACTGGGGATATAGTGCAAACATTTC
GGATCAGTGACGGCGAAGACGTGGTTGGAGAGACTTTCTGGAATGCTGAA
AGCATGAACGGTATGTTATATGTGGCCGGAAAACGAATCATTCACAAAGA
CCTGTCTCCCAGGTCCGCGCTGACGTTGACCAAGATTGATACAGAGAAAA
TGGAACAAGTCGGGTCGCGAGAGTTTGACAACGAACTGCAGAGAGGCATG
GTACTTTGCGCAGACGATGAAGGTGTAACAGCAAGCTATGTGGCACGAAA
CAACAACCAAGGACGTGTGATTGTCAATGAGATGGACGACAAACTTGACA
ATGTGATGCGAACGGAAGTGAAAATCCAGCGTGACCCGATTTACCAGAAG
GCAGTACGGTCAGCCATGGTTGCCTGCGATGCGACGAAGAGTCCGCCAGT
GTTGCTGATGAACACGGCTGAGGCACTGAACCAGACGGCGCCGGACTGGG
AAACGAAACGCAAGCTGAATAACCAACGGCCGGCGCTGCTGACGGTCGAG
AGCAAGACGTTCCAATCGATCTCTCAGTCGCAGCGGAGCATAGAGTGGGT
TGCGTCGGGAATGCTGAACAGAGACGGCGGCGACAACTGGATCATCTACG
GCAAAACGGGCAATGGAAAACCGCTTGTCTCCAACGGGTACCTGCCCAAA
CCGAAGAAAGTGGTGCCCACGCCCAGCCCCTTTCCGCTCCCTCTACAGCG
CGTTCGTGCTTAG
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