Gvermi11626.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11626.t1
Unique NameGvermi11626.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1256224..1257270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue1.94e-37
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11626Gvermi11626Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1256224..1257270 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11626.t1.stop1Gvermi11626.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1256224..1256226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11626.t1.CDS1Gvermi11626.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1256224..1257270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11626.t1.exon1Gvermi11626.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1256224..1257270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11626.t1.start1Gvermi11626.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1257268..1257270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11626.t1Gvermi11626.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1256224..1257270 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11626.t1 ID=Gvermi11626.t1|Name=Gvermi11626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=349bp
MRVLYDKDNYYVLHFDPKIPVADAGQTLENVWKTIRVSGIPHKNENVVVL
KPEVITYRGITMTLNFLSAADKLLTVGAWDFFINLSGADFPTVSQRKMKQ
LLYRARNANFVEWKPRRTWASYAKRRLGHFYVDTGLVTMHSQNGSYLTGH
GNYDIDEPDESAHIRNPIADYVDFTLAKSSGWFILSRKYTMYMLRSSQSK
KLLIALAYSDASDEHYFGSLLWNSHFRDTVVDSNLRNIFFVAPNGSFALG
ADGKRRRQHPFWVDEMDEDGKELLFWHRLWNEPAFFTRKIRGMNGFCERV
EREMIGIGNVVDKRKVAEYEHAVTSTFTAVIEPLIGRTSLDENDDDEY*
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spliced messenger RNA

>Gvermi11626.t1 ID=Gvermi11626.t1|Name=Gvermi11626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_3404:1256224..1257270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTCCTATATGACAAGGACAATTACTACGTTCTTCATTTTGATCC
AAAGATCCCTGTTGCAGATGCCGGGCAAACACTTGAGAACGTGTGGAAAA
CGATTAGAGTTTCTGGCATACCTCACAAGAATGAGAACGTTGTTGTTCTG
AAGCCAGAAGTTATTACATATAGAGGAATAACAATGACGCTCAACTTTCT
GTCCGCTGCGGACAAGTTGCTAACTGTGGGTGCGTGGGATTTTTTCATCA
ATCTGTCTGGGGCCGACTTTCCGACAGTCTCTCAAAGGAAAATGAAGCAG
TTGCTGTATCGAGCCCGAAATGCGAACTTTGTCGAATGGAAACCACGTCG
GACTTGGGCGTCTTATGCGAAGCGGAGACTCGGACACTTTTATGTAGACA
CGGGGCTCGTCACAATGCATTCACAAAATGGAAGTTACCTCACGGGTCAC
GGGAACTATGACATTGATGAACCAGATGAAAGCGCGCACATTCGGAATCC
CATCGCAGATTATGTGGACTTCACGCTGGCAAAATCTTCCGGATGGTTTA
TTCTATCCAGAAAGTATACTATGTATATGTTGCGAAGCTCACAATCGAAG
AAGCTGTTGATTGCTCTGGCGTACTCTGATGCATCGGATGAGCATTACTT
TGGAAGCTTACTGTGGAACAGCCATTTCAGAGACACTGTGGTTGACAGCA
ATTTGAGAAACATATTCTTCGTGGCACCCAATGGAAGTTTCGCGCTTGGA
GCGGACGGCAAGAGACGGAGGCAACACCCGTTTTGGGTCGATGAGATGGA
TGAGGATGGGAAAGAGCTTCTGTTTTGGCACAGACTGTGGAATGAACCCG
CGTTCTTCACCCGCAAGATCAGAGGGATGAACGGGTTTTGTGAACGTGTG
GAAAGGGAAATGATCGGAATTGGGAATGTAGTAGACAAGAGAAAAGTGGC
AGAGTATGAGCACGCCGTGACAAGCACGTTTACTGCTGTTATCGAACCTT
TGATCGGAAGGACTAGTTTGGACGAAAATGACGACGACGAATATTAA
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protein sequence of Gvermi11626.t1

>Gvermi11626.t1 ID=Gvermi11626.t1|Name=Gvermi11626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=349bp
MRVLYDKDNYYVLHFDPKIPVADAGQTLENVWKTIRVSGIPHKNENVVVL
KPEVITYRGITMTLNFLSAADKLLTVGAWDFFINLSGADFPTVSQRKMKQ
LLYRARNANFVEWKPRRTWASYAKRRLGHFYVDTGLVTMHSQNGSYLTGH
GNYDIDEPDESAHIRNPIADYVDFTLAKSSGWFILSRKYTMYMLRSSQSK
KLLIALAYSDASDEHYFGSLLWNSHFRDTVVDSNLRNIFFVAPNGSFALG
ADGKRRRQHPFWVDEMDEDGKELLFWHRLWNEPAFFTRKIRGMNGFCERV
EREMIGIGNVVDKRKVAEYEHAVTSTFTAVIEPLIGRTSLDENDDDEY*
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mRNA from alignment at ScGOVlb_3404:1256224..1257270-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11626.t1 ID=Gvermi11626.t1|Name=Gvermi11626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_3404:1256224..1257270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTCCTATATGACAAGGACAATTACTACGTTCTTCATTTTGATCC
AAAGATCCCTGTTGCAGATGCCGGGCAAACACTTGAGAACGTGTGGAAAA
CGATTAGAGTTTCTGGCATACCTCACAAGAATGAGAACGTTGTTGTTCTG
AAGCCAGAAGTTATTACATATAGAGGAATAACAATGACGCTCAACTTTCT
GTCCGCTGCGGACAAGTTGCTAACTGTGGGTGCGTGGGATTTTTTCATCA
ATCTGTCTGGGGCCGACTTTCCGACAGTCTCTCAAAGGAAAATGAAGCAG
TTGCTGTATCGAGCCCGAAATGCGAACTTTGTCGAATGGAAACCACGTCG
GACTTGGGCGTCTTATGCGAAGCGGAGACTCGGACACTTTTATGTAGACA
CGGGGCTCGTCACAATGCATTCACAAAATGGAAGTTACCTCACGGGTCAC
GGGAACTATGACATTGATGAACCAGATGAAAGCGCGCACATTCGGAATCC
CATCGCAGATTATGTGGACTTCACGCTGGCAAAATCTTCCGGATGGTTTA
TTCTATCCAGAAAGTATACTATGTATATGTTGCGAAGCTCACAATCGAAG
AAGCTGTTGATTGCTCTGGCGTACTCTGATGCATCGGATGAGCATTACTT
TGGAAGCTTACTGTGGAACAGCCATTTCAGAGACACTGTGGTTGACAGCA
ATTTGAGAAACATATTCTTCGTGGCACCCAATGGAAGTTTCGCGCTTGGA
GCGGACGGCAAGAGACGGAGGCAACACCCGTTTTGGGTCGATGAGATGGA
TGAGGATGGGAAAGAGCTTCTGTTTTGGCACAGACTGTGGAATGAACCCG
CGTTCTTCACCCGCAAGATCAGAGGGATGAACGGGTTTTGTGAACGTGTG
GAAAGGGAAATGATCGGAATTGGGAATGTAGTAGACAAGAGAAAAGTGGC
AGAGTATGAGCACGCCGTGACAAGCACGTTTACTGCTGTTATCGAACCTT
TGATCGGAAGGACTAGTTTGGACGAAAATGACGACGACGAATATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1256224..1257270-

>Gvermi11626.t1 ID=Gvermi11626.t1|Name=Gvermi11626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1047bp|location=Sequence derived from alignment at ScGOVlb_3404:1256224..1257270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTCCTATATGACAAGGACAATTACTACGTTCTTCATTTTGATCC
AAAGATCCCTGTTGCAGATGCCGGGCAAACACTTGAGAACGTGTGGAAAA
CGATTAGAGTTTCTGGCATACCTCACAAGAATGAGAACGTTGTTGTTCTG
AAGCCAGAAGTTATTACATATAGAGGAATAACAATGACGCTCAACTTTCT
GTCCGCTGCGGACAAGTTGCTAACTGTGGGTGCGTGGGATTTTTTCATCA
ATCTGTCTGGGGCCGACTTTCCGACAGTCTCTCAAAGGAAAATGAAGCAG
TTGCTGTATCGAGCCCGAAATGCGAACTTTGTCGAATGGAAACCACGTCG
GACTTGGGCGTCTTATGCGAAGCGGAGACTCGGACACTTTTATGTAGACA
CGGGGCTCGTCACAATGCATTCACAAAATGGAAGTTACCTCACGGGTCAC
GGGAACTATGACATTGATGAACCAGATGAAAGCGCGCACATTCGGAATCC
CATCGCAGATTATGTGGACTTCACGCTGGCAAAATCTTCCGGATGGTTTA
TTCTATCCAGAAAGTATACTATGTATATGTTGCGAAGCTCACAATCGAAG
AAGCTGTTGATTGCTCTGGCGTACTCTGATGCATCGGATGAGCATTACTT
TGGAAGCTTACTGTGGAACAGCCATTTCAGAGACACTGTGGTTGACAGCA
ATTTGAGAAACATATTCTTCGTGGCACCCAATGGAAGTTTCGCGCTTGGA
GCGGACGGCAAGAGACGGAGGCAACACCCGTTTTGGGTCGATGAGATGGA
TGAGGATGGGAAAGAGCTTCTGTTTTGGCACAGACTGTGGAATGAACCCG
CGTTCTTCACCCGCAAGATCAGAGGGATGAACGGGTTTTGTGAACGTGTG
GAAAGGGAAATGATCGGAATTGGGAATGTAGTAGACAAGAGAAAAGTGGC
AGAGTATGAGCACGCCGTGACAAGCACGTTTACTGCTGTTATCGAACCTT
TGATCGGAAGGACTAGTTTGGACGAAAATGACGACGACGAATATTAA
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