Gvermi11621.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11621.t1
Unique NameGvermi11621.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1238775..1240565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11621Gvermi11621Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1238775..1240565 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11621.t1.stop1Gvermi11621.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1238775..1238777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11621.t1.CDS1Gvermi11621.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1238775..1240565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11621.t1.exon1Gvermi11621.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1238775..1240565 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11621.t1.start1Gvermi11621.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1240563..1240565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11621.t1Gvermi11621.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1238775..1240565 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11621.t1 ID=Gvermi11621.t1|Name=Gvermi11621.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp
MESANPSADAMVRYESRISAYNDFEAMVKLSDLLLYDNRVPKDSPRALQL
LERAIKQGRNQRAMYHLALYYRDYGNKLQRRCVIPLLEQALRVRERKRVL
FHLASTLYSDKCGPKDPAGAAQLLRRALRLGEDVECMATLAHILLKETCV
TGDKQTGLLLYRRAISISNNPVHMNNLGALYTNGTPRLEKSYPRAIKWFK
RAIRGGNIVARTNYATVLCQTDSGIEPDCRTAARVLEEVCHMKNEAVLLQ
LAEIYEQWEELRDFERAFSLYERAIREVRSAKALLRWIDALVYGRVGLAI
NNAGAVQVCNRFLSFGKLPSIILLSILWNGSAGVPADPQRAFELCQGLDD
DKPYLLAAMYRSGAGPIQADREQAKKLCLEPRINPEKLIAGVLLSEEDNV
ESIQRAEVLLREVSNAVEGHLIWMPLFLRRSKLGLLFHRDASVLPNETKR
FEYMDQIAKLNLAVLLLELEDRGSDARSEAMHIFEMLMKSRLRELAAVNL
ADVLLRGLAGVEQDRRRAMGILERADEGHMGARVMLVGALFEDCQKRRGR
ALWEELKEDVSDGEELNRLWRLLPDAVRPQLSADGLRGGGDAGAAC*
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spliced messenger RNA

>Gvermi11621.t1 ID=Gvermi11621.t1|Name=Gvermi11621.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_3404:1238775..1240565- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCTGCAAACCCTTCAGCTGATGCAATGGTACGCTACGAGTCCCG
CATCTCCGCGTACAACGACTTCGAGGCCATGGTGAAGCTATCCGACCTTC
TCCTCTACGACAACCGCGTTCCGAAAGATTCGCCCCGCGCACTTCAACTT
CTTGAGCGCGCCATAAAGCAAGGCCGCAACCAAAGAGCCATGTACCACCT
GGCTCTCTACTATCGCGACTATGGCAACAAGTTGCAGCGCCGATGCGTCA
TTCCGCTCCTCGAGCAAGCTTTGCGAGTCAGAGAGAGAAAACGAGTGCTG
TTTCACCTGGCGAGCACTTTGTACTCCGACAAATGTGGACCAAAGGATCC
CGCGGGTGCGGCGCAGCTGCTTCGTCGAGCTCTACGGCTCGGGGAGGATG
TGGAATGCATGGCTACCCTGGCGCACATACTTTTGAAAGAAACTTGCGTC
ACTGGCGATAAGCAAACAGGATTACTGCTTTACAGGCGTGCCATAAGCAT
ATCAAACAACCCTGTGCACATGAACAACCTGGGGGCTCTTTACACCAATG
GCACGCCTCGTTTGGAGAAGTCATATCCCAGGGCAATCAAATGGTTCAAG
CGTGCTATCCGCGGAGGCAACATCGTGGCTAGGACAAATTACGCCACCGT
GCTGTGCCAAACAGATTCTGGAATTGAACCTGACTGCAGAACTGCGGCGC
GCGTTCTAGAGGAGGTATGCCACATGAAAAACGAGGCGGTGTTGCTGCAG
TTGGCCGAAATTTACGAGCAGTGGGAAGAACTGAGAGACTTTGAACGCGC
TTTTTCATTGTACGAACGAGCCATACGTGAGGTGCGTTCTGCGAAAGCGC
TCTTGCGCTGGATTGATGCGCTGGTTTACGGACGGGTGGGACTTGCGATC
AACAATGCCGGGGCGGTGCAGGTATGCAACAGATTTTTGTCGTTTGGAAA
GCTTCCGAGCATAATCCTGTTGTCCATATTGTGGAACGGTAGCGCTGGCG
TGCCGGCAGATCCCCAACGAGCTTTTGAGCTGTGTCAGGGTTTGGACGAT
GATAAACCGTACCTGCTAGCGGCAATGTATCGGAGTGGGGCTGGCCCCAT
CCAGGCGGATCGGGAACAAGCAAAGAAGCTGTGTTTAGAACCTAGAATCA
ATCCCGAGAAACTGATCGCGGGCGTGCTGTTGAGTGAAGAAGACAACGTG
GAATCGATACAACGAGCGGAAGTGCTTCTCCGCGAGGTGAGCAACGCTGT
TGAGGGACATCTGATCTGGATGCCGCTGTTCTTGAGACGAAGCAAACTGG
GTTTGCTTTTTCACAGAGACGCAAGCGTGTTGCCAAACGAGACGAAGAGG
TTCGAATACATGGATCAAATAGCGAAACTGAACCTGGCGGTTCTACTTCT
CGAGCTGGAAGACAGGGGTTCGGACGCACGCTCGGAAGCGATGCATATCT
TTGAGATGCTGATGAAGTCGAGACTGAGGGAGTTGGCGGCGGTGAACTTG
GCTGACGTGCTGCTGAGGGGGCTAGCGGGCGTGGAACAGGACAGAAGAAG
AGCGATGGGAATTCTTGAACGCGCTGATGAGGGACACATGGGCGCGCGGG
TGATGCTGGTCGGTGCGCTGTTTGAGGATTGCCAGAAGCGGAGAGGCCGA
GCGCTCTGGGAAGAGCTGAAAGAGGACGTGAGCGACGGAGAGGAACTAAA
CAGACTGTGGCGGTTGCTGCCAGATGCGGTGCGGCCACAACTCAGCGCGG
ACGGCCTGCGTGGAGGGGGGGATGCGGGCGCGGCTTGCTGA
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protein sequence of Gvermi11621.t1

>Gvermi11621.t1 ID=Gvermi11621.t1|Name=Gvermi11621.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=597bp
MESANPSADAMVRYESRISAYNDFEAMVKLSDLLLYDNRVPKDSPRALQL
LERAIKQGRNQRAMYHLALYYRDYGNKLQRRCVIPLLEQALRVRERKRVL
FHLASTLYSDKCGPKDPAGAAQLLRRALRLGEDVECMATLAHILLKETCV
TGDKQTGLLLYRRAISISNNPVHMNNLGALYTNGTPRLEKSYPRAIKWFK
RAIRGGNIVARTNYATVLCQTDSGIEPDCRTAARVLEEVCHMKNEAVLLQ
LAEIYEQWEELRDFERAFSLYERAIREVRSAKALLRWIDALVYGRVGLAI
NNAGAVQVCNRFLSFGKLPSIILLSILWNGSAGVPADPQRAFELCQGLDD
DKPYLLAAMYRSGAGPIQADREQAKKLCLEPRINPEKLIAGVLLSEEDNV
ESIQRAEVLLREVSNAVEGHLIWMPLFLRRSKLGLLFHRDASVLPNETKR
FEYMDQIAKLNLAVLLLELEDRGSDARSEAMHIFEMLMKSRLRELAAVNL
ADVLLRGLAGVEQDRRRAMGILERADEGHMGARVMLVGALFEDCQKRRGR
ALWEELKEDVSDGEELNRLWRLLPDAVRPQLSADGLRGGGDAGAAC*
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mRNA from alignment at ScGOVlb_3404:1238775..1240565-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11621.t1 ID=Gvermi11621.t1|Name=Gvermi11621.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_3404:1238775..1240565- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATCTGCAAACCCTTCAGCTGATGCAATGGTACGCTACGAGTCCCG
CATCTCCGCGTACAACGACTTCGAGGCCATGGTGAAGCTATCCGACCTTC
TCCTCTACGACAACCGCGTTCCGAAAGATTCGCCCCGCGCACTTCAACTT
CTTGAGCGCGCCATAAAGCAAGGCCGCAACCAAAGAGCCATGTACCACCT
GGCTCTCTACTATCGCGACTATGGCAACAAGTTGCAGCGCCGATGCGTCA
TTCCGCTCCTCGAGCAAGCTTTGCGAGTCAGAGAGAGAAAACGAGTGCTG
TTTCACCTGGCGAGCACTTTGTACTCCGACAAATGTGGACCAAAGGATCC
CGCGGGTGCGGCGCAGCTGCTTCGTCGAGCTCTACGGCTCGGGGAGGATG
TGGAATGCATGGCTACCCTGGCGCACATACTTTTGAAAGAAACTTGCGTC
ACTGGCGATAAGCAAACAGGATTACTGCTTTACAGGCGTGCCATAAGCAT
ATCAAACAACCCTGTGCACATGAACAACCTGGGGGCTCTTTACACCAATG
GCACGCCTCGTTTGGAGAAGTCATATCCCAGGGCAATCAAATGGTTCAAG
CGTGCTATCCGCGGAGGCAACATCGTGGCTAGGACAAATTACGCCACCGT
GCTGTGCCAAACAGATTCTGGAATTGAACCTGACTGCAGAACTGCGGCGC
GCGTTCTAGAGGAGGTATGCCACATGAAAAACGAGGCGGTGTTGCTGCAG
TTGGCCGAAATTTACGAGCAGTGGGAAGAACTGAGAGACTTTGAACGCGC
TTTTTCATTGTACGAACGAGCCATACGTGAGGTGCGTTCTGCGAAAGCGC
TCTTGCGCTGGATTGATGCGCTGGTTTACGGACGGGTGGGACTTGCGATC
AACAATGCCGGGGCGGTGCAGGTATGCAACAGATTTTTGTCGTTTGGAAA
GCTTCCGAGCATAATCCTGTTGTCCATATTGTGGAACGGTAGCGCTGGCG
TGCCGGCAGATCCCCAACGAGCTTTTGAGCTGTGTCAGGGTTTGGACGAT
GATAAACCGTACCTGCTAGCGGCAATGTATCGGAGTGGGGCTGGCCCCAT
CCAGGCGGATCGGGAACAAGCAAAGAAGCTGTGTTTAGAACCTAGAATCA
ATCCCGAGAAACTGATCGCGGGCGTGCTGTTGAGTGAAGAAGACAACGTG
GAATCGATACAACGAGCGGAAGTGCTTCTCCGCGAGGTGAGCAACGCTGT
TGAGGGACATCTGATCTGGATGCCGCTGTTCTTGAGACGAAGCAAACTGG
GTTTGCTTTTTCACAGAGACGCAAGCGTGTTGCCAAACGAGACGAAGAGG
TTCGAATACATGGATCAAATAGCGAAACTGAACCTGGCGGTTCTACTTCT
CGAGCTGGAAGACAGGGGTTCGGACGCACGCTCGGAAGCGATGCATATCT
TTGAGATGCTGATGAAGTCGAGACTGAGGGAGTTGGCGGCGGTGAACTTG
GCTGACGTGCTGCTGAGGGGGCTAGCGGGCGTGGAACAGGACAGAAGAAG
AGCGATGGGAATTCTTGAACGCGCTGATGAGGGACACATGGGCGCGCGGG
TGATGCTGGTCGGTGCGCTGTTTGAGGATTGCCAGAAGCGGAGAGGCCGA
GCGCTCTGGGAAGAGCTGAAAGAGGACGTGAGCGACGGAGAGGAACTAAA
CAGACTGTGGCGGTTGCTGCCAGATGCGGTGCGGCCACAACTCAGCGCGG
ACGGCCTGCGTGGAGGGGGGGATGCGGGCGCGGCTTGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1238775..1240565-

>Gvermi11621.t1 ID=Gvermi11621.t1|Name=Gvermi11621.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1791bp|location=Sequence derived from alignment at ScGOVlb_3404:1238775..1240565- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATCTGCAAACCCTTCAGCTGATGCAATGGTACGCTACGAGTCCCG
CATCTCCGCGTACAACGACTTCGAGGCCATGGTGAAGCTATCCGACCTTC
TCCTCTACGACAACCGCGTTCCGAAAGATTCGCCCCGCGCACTTCAACTT
CTTGAGCGCGCCATAAAGCAAGGCCGCAACCAAAGAGCCATGTACCACCT
GGCTCTCTACTATCGCGACTATGGCAACAAGTTGCAGCGCCGATGCGTCA
TTCCGCTCCTCGAGCAAGCTTTGCGAGTCAGAGAGAGAAAACGAGTGCTG
TTTCACCTGGCGAGCACTTTGTACTCCGACAAATGTGGACCAAAGGATCC
CGCGGGTGCGGCGCAGCTGCTTCGTCGAGCTCTACGGCTCGGGGAGGATG
TGGAATGCATGGCTACCCTGGCGCACATACTTTTGAAAGAAACTTGCGTC
ACTGGCGATAAGCAAACAGGATTACTGCTTTACAGGCGTGCCATAAGCAT
ATCAAACAACCCTGTGCACATGAACAACCTGGGGGCTCTTTACACCAATG
GCACGCCTCGTTTGGAGAAGTCATATCCCAGGGCAATCAAATGGTTCAAG
CGTGCTATCCGCGGAGGCAACATCGTGGCTAGGACAAATTACGCCACCGT
GCTGTGCCAAACAGATTCTGGAATTGAACCTGACTGCAGAACTGCGGCGC
GCGTTCTAGAGGAGGTATGCCACATGAAAAACGAGGCGGTGTTGCTGCAG
TTGGCCGAAATTTACGAGCAGTGGGAAGAACTGAGAGACTTTGAACGCGC
TTTTTCATTGTACGAACGAGCCATACGTGAGGTGCGTTCTGCGAAAGCGC
TCTTGCGCTGGATTGATGCGCTGGTTTACGGACGGGTGGGACTTGCGATC
AACAATGCCGGGGCGGTGCAGGTATGCAACAGATTTTTGTCGTTTGGAAA
GCTTCCGAGCATAATCCTGTTGTCCATATTGTGGAACGGTAGCGCTGGCG
TGCCGGCAGATCCCCAACGAGCTTTTGAGCTGTGTCAGGGTTTGGACGAT
GATAAACCGTACCTGCTAGCGGCAATGTATCGGAGTGGGGCTGGCCCCAT
CCAGGCGGATCGGGAACAAGCAAAGAAGCTGTGTTTAGAACCTAGAATCA
ATCCCGAGAAACTGATCGCGGGCGTGCTGTTGAGTGAAGAAGACAACGTG
GAATCGATACAACGAGCGGAAGTGCTTCTCCGCGAGGTGAGCAACGCTGT
TGAGGGACATCTGATCTGGATGCCGCTGTTCTTGAGACGAAGCAAACTGG
GTTTGCTTTTTCACAGAGACGCAAGCGTGTTGCCAAACGAGACGAAGAGG
TTCGAATACATGGATCAAATAGCGAAACTGAACCTGGCGGTTCTACTTCT
CGAGCTGGAAGACAGGGGTTCGGACGCACGCTCGGAAGCGATGCATATCT
TTGAGATGCTGATGAAGTCGAGACTGAGGGAGTTGGCGGCGGTGAACTTG
GCTGACGTGCTGCTGAGGGGGCTAGCGGGCGTGGAACAGGACAGAAGAAG
AGCGATGGGAATTCTTGAACGCGCTGATGAGGGACACATGGGCGCGCGGG
TGATGCTGGTCGGTGCGCTGTTTGAGGATTGCCAGAAGCGGAGAGGCCGA
GCGCTCTGGGAAGAGCTGAAAGAGGACGTGAGCGACGGAGAGGAACTAAA
CAGACTGTGGCGGTTGCTGCCAGATGCGGTGCGGCCACAACTCAGCGCGG
ACGGCCTGCGTGGAGGGGGGGATGCGGGCGCGGCTTGCTGA
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